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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396916
gRNA Name: ctcf gRNA4
Synonyms: HpCTCF sgRNA#4
Genomic Target: ctcf
Derived from:

PAM Sequence: AGG
Sequence: 5' GGCATTAGGATTGCTGATGT 3'



Genomic Target S. purpuratus
Identities 20/20
genome
gRNA
 
5' ACATCAGCAATCCTAATGCC 3'
   ||||||||||||||||||||
3' TGTAGTCGTTAGGATTACGG 5'
      
Genomic Alignments Position Identity Strand Genomic Target
S. purpuratus 5.0 NW_022145614.1:9068283..9068302 20/20 Antisense ctcf
NW_022145540.1:123747..123766 19/20 Antisense LOC593001
NW_022145605.1:20377387..20377406 17/20
NW_022145605.1:20533392..20533411 17/20
P. miniata 3.0 NW_024037069.1:10386896..10386915 17/20 Sense LOC119738824
NW_024037070.1:4918437..4918456 17/20 Sense LOC119739243
NW_024037073.1:7598393..7598412 17/20 Antisense LOC119742559
L. variegatus 3.0 chr2:23514745..23514764 19/20 Antisense LOC121407614
chr2:30685345..30685364 19/20 Antisense LOC121407816
chr15:12476484..12476503 18/20 Sense LOC121429090
chr8:10687399..10687418 17/20 Antisense LOC121420638
chr9:10389453..10389472 18/20
chr9:10389506..10389525 18/20
chr9:10389559..10389578 18/20
chr9:10389612..10389631 18/20
chr9:10389665..10389684 18/20
chr9:10389718..10389737 18/20
chr9:10389771..10389790 18/20
chr9:10389824..10389843 18/20
chr9:10389877..10389896 18/20
chr9:10389930..10389949 18/20
chr9:10390035..10390054 18/20
Publications
???morpholino.displaySummary.papersFirst??? The crucial role of CTCF in mitotic progression during early development of sea urchin., Dev Growth Differ 2023  
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