Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041619434.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121423900 (LOC121423900), transcript variant X2, mRNA TTTAGCTTGCGCGTGATTTATAATACAATTATCGCGAGATTCGATGCGAGAGCTTCAGTTTTCATGAAAA GTGACAGGAAACACTGCCGAAAATTGATAAAACGACCTGATATAAAAGGTCAGATATGTCAGAGCTAGAG CAGGATGGTAGTAAAGGAGGCGAAGATGTAGTGAATGTTCTGACAGATATTATGGCACCGGTGGATGATG ACTTTGATGAAGAAGTAAAGACCACTACACCTGCCAAGAAAGTTGTAAAGAAAGTCACCAAAACCACAAA ATCCACAGCACAGACAAAGACTGTTAAAAAACCAGCAAGTCCAGCTACGGCCAAAGCCACAAAGCAGACC ACCTCAACTCCTGCTGCCAGTGAGGAATCAACCCCAAAGACTGAAACCATAAGTGAACAACCTCCTAAAA CCAAGCAACCCACCACAGCCTCCTCAACAGCTGCTTCTACAACTCCTGCAAAGGCAACATCAACTGGCAC AACACCGGCCAACAAGACCAAGAAGGTTGTGAAGAAGACCCCCGTAGCTGCCAAGTCAGGAGCAGCAACA AAACAAACTACCGCCAAGCCTACGGCAGGAAAGACTCCTGCATCAGCGGCTAAAAAGAAGCCAGTGAAGG TGGTGAAGAAGACGACACCAGCCTCTGTGAAAGCCAAAACCGCTGCATCCGCCAAGGAGAGTGCTGGGGA TTCGGGGGCTAAAGCTAAAGCAGATCCTGTTGAAAGTGCTAAAGTAGAGACAGAGACTGTTCTTGCAGAG ACAGAAGAGACAAAGGCCCCAGAAGATTCTGAGACTCCTATGGAAGTAACTGAAGACGACCCAATAAAAG ACGTTGACAATTCTGCAGAGATATCCACTGAAGCTATACCAGACGTCGAGATCAGCAAGGAAGGTGTTGA CGGGCAGGACGAAGAACAAGAGGAAGAAGAGGAGAACGAAGAGGAAGCTATCGAAGAAGAGGACGAGAGC AACATTGTTGAAGGAGAGGCTAACGGAGACGGAGAAATGGAGCCACCCGATTTCAGCGACACCTTTGATG TCAGGAGCGAAGCAAGCTCTACTTCTTCAGGCAGTCAGATTGATGACGTAGACAGTGACCATGACAACAG ACAACAGTCTAGAAGGGACAGAAAACGACAGTTCTCTCCAATTGTGTATGAAGGACAGGAGGTTTCAGAT TCTGATGACGAGAACAGCAAGAAAGCCAAGCTGTCCTCATCCGTTAACGAAGTGAAACCAGGAGATCAGA CAGCTAAGATGAAGTACCTGTTCCGGGATGCTCGATACTTCCTCATCAAGAGCAACAACCACGAGAACAT TTCCCTTGCCAAAGCTAAGGGTTCTGGAAAGGCCCAGAATGGACACCCGGCATGCCTCCACAAACCCCAG GGGTTGGGATCATCTTCCAAGTGGGAAGGCCGCGTTTGTGTTTCTCAAGGTGCCCCGTTCCAGAGACCTT CCAAAAAGAAACGTAGTAACTCTTACTCTGCTGCTATTATGCATCCATCTAAAAGAAAACATTTTGTTGT ATCAGCCACAGCAACCTCAGAAATGTCACCGGATTGTAGGACCACATTTTCTCTTGGTCGGGAGAGTGAC CATACAGCCGATGAAGAAGTGCCTGTGCAGAATCACCTGCAGAGGAACAGTTCATCCAATGAAGGTGGTC CAAGTGTTCACCTTCAAGCTAAAAAGGCTGTTTGGGCACCTAGAAGTTGCGAGACTGTGCAGGGGAACTT ACGTGATAAACATGAAAGAATACCACATAGATACATTTATCGGAGACAGAAAGCACGTTTTCATGATGGT AATAGGGATCCGTGTTTCTCTGACAAGGGGCATCCTGACATTTTTAACAATTCTATTGACTTGAATGGGC ATGACTTTGATGATTTGAGTTTTGAATATGATGATGAGGAGGAAGAAGAGGAAGAGGAGGATGATACATT TTACCCATCTCAAAATCAAAACCAAAGATGGAGGAAGAGAGAAAGATTTTCCGATAATCGCTCAAACTTT GGATCCTTTGGTGGACATGACATTCCAACTTCCTTTGAACACCCAACAGAGAACACAATGAGAAGTGATA CTGCTGATCTGGAAAGGTTGCTTCAGGATGCATCAGCTAAATTGCATGATCAGAGTTCTTTGCACCTCCG CATTCAGCAACTAGAAGGTTGTTTGGGAAATGTGATCACAGTTTTGCACAAAGTGGTCAAGATGTCCAGC TCATCCCTGCAAAAACCGACCCCTAGGCCCAGGAGGAAAAGAATTCAACCATTTGGAGGACCCTCTAGAA TGGACCGTGACAGCTTCAGAAGATGGAAGAGCAACCAAGGAGACCCCAATGAAAGAAGGATTGAAGGAGA AAGTGAATTGGATGAAGGACTGATGGAGCGTCAAGGTCATCTGGATGGAACAAGTGATGGCCAACCGACA CTTGATAACTGTGACACCAGAAGTGACCGCTGTCAAAGTCCAGAACAACCTGATAATGGTGAAAATCCAG AGGAGCGTCTTTCTGCTTCCGATTTTCAGCCGGATTCTAGGTGCCCAGACAGCGGTGCAGATAACTGTGG TGATCTCGGTGACCGTGATGTAATTTCCAGCCATGGCCATACTTCTGTGCAAAATGACAGAGTTGATAAT GATGGTGAACAAAACAGTGATACTGCTAGTCCACCAACCAATTCAGAACAGGAACAAGAGTTAAAGCATG ATGGGCAAGTTAGTTGTAATGTTGCAAATGGGGAAGAAGGTGATCTGTCTCCGTTAAAGACATCACCAGA TTCATGTGAACTTGGGACAGCTGAGAAAGAGAATTCTGAGAGTATTGTGCAAGGAACAAGTAAGTTTGAT GGATCTGATGTCATTCAAGAAGAGGCCAATGAATCTTCCGCTTTGGGTGAAAACTCTTCACCTGTAACCT TTCCTGGTGAGAATGAGAGGGATGGCCAGGTGGATCTTGTTGGGCCTGTCATCATTCGGATCAAATCTGA GTTCAGTTGCGACGATGGTATAGACACCTGGCCGGATAGTTCCCAACCCATCACTTCATACAATCATCCA GGAGTGGCTCCCCATGACCCAAACCTTGTTGTGCTCTCTGATGATTCGTGTGTAAATGATAATCCAGTTG CAGTGCATTCAAGCAAGGTTATGGACACTGCTCAAAGCTCGCTAAATGAACAGGCAGGAAATCATTTAGG TTATGAACATGATGCAGATATACAGTCTCTACAAGAAATACTCGCTACATCTGCTGGGTCTGATGATGAG GATGTCAAGTTTCTTTATGAAAATGTCCCTTTGGGTGATCAAAAGAGAGGGCTGAAAACAAAAAATTCAC AAGACTTATTTCATGTAGATCAGAGTGAAAATGAGAGAGGAAACACTGAGCTTATCTGTGTAGAGGATAG TGATTCTAGGTGGCATGCCCAAAACTCTGGTCGTAGAACAGGGGCACAATCGGTCAGATCGGTTCCAGTA AGGCTGAGGCTGAATCGAACTGATGCCAGTTCACGTAGAGTTCAGAACAACATTCCTCAAGTTTTAAGCC AGAATGGCAATGCACAGTACATGGGCATACCCTGTCAGTCACAGCACTACAATATGAACCTTCCTGGACC TCACCAGGCTCATGCCCAAAAGCTGCAACAGAGTGGTAGTTCTCCAAGATTCCATTCTCAATCACAAACC ATTAATTCTCAAAGTACTGTTGGAAGAAGAAATGCTGCCATGAGGAGCGCTTCAAGGATACATACAGCTT GTAGGCTGCCCGTAGCTCCCCCAAACCCTCGGAATAACAGTGCCATGAACTTTGGAAACGCAAATCAAAG GAGAGATATCTACATAGACAGAAACAACGTGCAATCAGTTTCCCAGAATAATGGTTCAAACATTGCTCAG TTTGGACACCATTACCGTGGTAGCTCTCAGGAACGGTCTCATTCCTTGAATCACAGTCCGTACACACAAC CGAACATGGCACATCCTTATCAGGCTGGCAATGAGTCAAGTTCCTATGGTGGTAGAGAGGAAAGAGTAGG ATCTGCACAAGCTGACGGTATTATTGCGGATGTACTTGGCGAACGAGATTGGATTAATGCCTGCTCTGAG GTGGATGGTGCTACGTCCCTCACTAGGGCATTGGCCCAGGCCCTCTTTGGCGACAGTATCCTGATCAAAA GCACTCTTCGGACTTCGGGCAAATACAAAGACTATGAACTACTGGATCCAAACTTAGTCAAGAAAATTGA AGATACGGTGATGAAAATATTTTGCCATGGGAAGAACGAGAAGTACCAGAAACATGTCTGGTCCCTCTGC AAGCAGTCTATGGGCCAGAGAATGAAATACTTGCGCAATCGCTACAGTTTGTCCTGATACTCCTTGGATT GTAGACCATCCGGGGAGCATTTCATGAAAGGACTTGTCTGACGTTTTATCCGACAAGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds