Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041614903.1 PREDICTED: Lytechinus variegatus dixin-like (LOC121420318), transcript variant X1, mRNA ACATTTTAAATAGATTTTCTATAACTGTACTTATCACGGTTGTTCTGAAAGCTGTAAAGAGAAGCACTGT CTGAATGATATGATTTTTTGGTTTGAATTCAGTGGATTTTATCACATTTTCTGGGATTTTTGCTCTGCAT ATTTAAACTTCTTCAATTCATGCGCATACATGTGTTTGTAAATGTATTTTGATTTGCAATTGCTTTGGAA AGCAGTGAGGGGATGATGATTTGTTATGAAAAATAATAATCTGCAGCCGTCTCCTTACAGGAATATTATA ATTGGACGTGGCGTGGCTGGAGTGCACGTAAATTAGATGCTACTTGGTGTGTAATTAATTGGCTTGTGAG ACTCCCAGTGCTTCAGCCAGCTGATCTCACAAACTAAACCAACCACAGCCGACGGATGTACTGAGCAGTG CACTTGAACCTGGTTGTATAGAGGGTATGGTCCTCCGCTTAATGCAAGATTCAGACGGAGTGTGTCAGGC TGGCGTGAGCGTGAAATTGTGCAAGCCTTTATATGAGGACAAATGAGATACAGTCTGTCGACTCGATAGT GGATACACGTGCATGCTGCGGGATGGAAACGCATGAATCTTAAACCTGCGAGATGTAGTTTGTGGATAAA CCAATCGAAAGGAATATCTTCCGTCATTGTTTATTATTCGATGTGGATTATGAACTCATCTCGCTACATC CAGTACATGTGTCAGCATCAGTTGATTAGATGCTTGTTGTACATGTATGTATTGATTCATCACTCAAATA TTCAGACGGAGCGCTTGCACATCCTCCGGCACGGATGCTTAATGAATCCAGCTGCTCGCGTCTCTCTCTC CTCCTGTCCTAGATTATGATGGAAGTGTGCCTCCACTATCCATCTAACATGTAAACTTGATTTGCTCTCT GACACTGTGACATTTGTATGATTGAAGGGCAGTCAGAGGGTCTTGGTTGTGACCTTGATGCAAGGAGGGG GCAGCGGCGGAAGGAAGCGATGACGTGGAACTGATCTTCGGCTATCTACATTAGATGGCAACTTGTTTTG ATCTGTACAGGTTTATAATGCTCTGTTGTTATCCGTTGTCTTACTGATGTATATCACTGGAATCAAGTTT GTGTGCATAAAAAGATCCACTCATTCAACCTGGACTTCAAGCAGGATCCTTCAAAATTTAAGCCTTTAGA CATCTTATCAACGACAGCGAATGTTATCCGATTTCCTTCAATGTCGACTTGAATCCTGTTGATATTTTTT GCATTGTTGTTGATTGTTTTTTTGTCGCTTGACTGTTAAGAGCTTTGTTCAGCTTGCGAAATTCTAATCT TGATAGCAGAGGTTCATGGTACCACTGTTGGTATTTCTGTTGAATCACTGTAGATTTGTGATTTTTTAAC AGAATTACATCTACTTCATGTACACAGGTTTAAATGTGTTGTAGCTCAAGGACATTTTTATGTAGTTCCT CTTTTTGCTCCCATGCACCCGGAAAGATATCATTGAGTTTTTTGCAATGTATTGGCTCTCAAGTGTTTAA TTACCTCAAAATCTAGTTTCACATCGTTTGAAGCTAAGCCTTTGGCTGTACAGAAATAACGGAGTCTGCA CAGCTGTAATTTTACATACATGAATTAGACCTGCTTGAGACCATTGACTGAAAGGAATCTACATGTGTAT GGCTGATTAAGGACAATTTACAAAACAAGGAAGTGATTATCTAAAGAGGAAATGTTGTATGAATATTTGA ATTGAGAAATACTGTTTTAATATCTCACAGGAAATAGTTTAAGGAGGAAGGAGGATTCCCTTTTAGAGGT GATTTTCTTGCTGTCTTTATGATCGAGAAATAATTGATTTCCTTTTATTTGACGATACACATGAATTGGG ATGATTTGTTTGATTGTTCAGAAGTTAGAAGGCAATGGCAGCAACATTTGAAAAATGAAGATGATCTTTT GAGATGAATTCATTGTACTTCTCTTAAAAATGGAAACCCATTTTGACATCAAATTTGACTTCGCAAGATT TTTATCAACTCGGTGAATGAACTGAAGTGGAGCCACTTTGAACAAACTCCTTTGAAAGAACAGTATTACC TTTAATACCTTTGGGCATCTTTATAATCTGTGCACACATGCACTTGTGCAGTGTATGTCCTCACAGCATT GTTTGATCATAAACTGTGAGCCAATTACCGTTTATCGTGACTGTCTTTGACCTAAATCAGGAAGCACTTT AGGGACTGTTTTTCCATACCTCGGTCCCATCTTCTTGATCAGTACCGCAAACATGGCGTGTGAATTCCAC ATATCAGGGAGCGAGTCCTCATGCAGCCTGCGCTTAGAGCAGCCACGGCCAACAAACAACAGAACATCGC AACTCTTAGCGCTTCTCAGAGACTTGGTGCTCAAGCGATGGGAGGTGCTGTATGCTTGGCAGATTTATCA ACAGCAACAATTGCAAGCGTATGTGGCATGGGTGAACTCCCAGCTGAAGAAGAGAGCAGGATGTAGAATG GTGGAGGATCTCAGGAGGGACATGCAGGATGGCGTGGCCCTTGTTCATCTTGTGGAAATAGTTTCTGGAG AAGCCCTGTCTCGTGTTGACTACAACCCGACATCGGCAACAGTGATGAGGGAGAATGTTGAACGTGTCCT CCAATTCATGGCATCGAAGAGAATACGCATGCATCATACCTCGGCTAAAGATATTGTTGATGGTAACCTA AAATCCATAATGAGATTGATCCTCGCGTTAGCGGCTCATTACAAACCAAGCAGCGTGAAACAAGCATCCC AGGCCTCCCCTATGGGTGCCTCACCGGCCACCCCGGGAACACCCAACTCCACCCCTCAGAGGAAGGGCCA ACGACAGCAGCCCTCGTTCACCGCCATGGCCGCCAATGCTGCCGCGGCCATCCATGACGCGAGGAAAGAA GCGGCCGGAGCCGGCGGTTCATTGAGGAGATATAAGGACATGACGCCGACCCATAAGCAAGGGTCCACCA ACCACCATGCAATCTCCCCCTCCCCCCTCCATGGCAGCCCCCACCCTGGGGCGCATCATACAGGGATGGG AACCCTCTATCCCAGCACGCACCACTCCTATCACCACTACTCTCCGACCACCTCAACGACCCATGACTAC CAACACAGAGTCTTGCCAAGAGGTGATTCTGGTGACCATCCAGAGGGTCCAAGAACTACCGGGGCTAGTA GCCCCTTACCGCCTACAGCCATGGCCCCTTCCCCTAATACAACCTCAGCCTCGGCCAGCCCTATGGTCAA CAGGACTGGTCAGCATGACCTTAGGAGAGCAATGAGCCCAAGACAACAGACAAATGTAGCTCATGCATCA GACTCGGATCAAGGAAGTGCAGGTGAAGATGGTGGTCCCCATTCACTTCCTAGTTCACGGAGGTCATCTA TCTGCCTGAGTGAAGCATTGATAGAAGAACAAGCGCTAATGGGAGATAACATTGAAGATACTAAGAAGTT ACTACAAAGTTTACAGGAGCTGCTTCTAAACGGTAAAATAGCTGAAGAAGATGGAAGTTCGGAAGCAGAG GAAGATCAGATGCAGTTTCAAGGAACAACAGCCAAAGAACAAGTGGTTGTGCTGCAAGCAAGATTAAACC AGCAGCAGTACGAGTGCAATCAACTACGAAATGAATTATCCAAAGTCAAGCAAGATTGTCGCAATCTGCA AGGTACCAAGGCAGGCCTACAGTCAAGGTTGACGGAACAAGACAATGCCATCCTGCAAATGAAGGCTGAT CTGTTGAAGATGGGGTTCGCCCAACAGAACCTTGAGGCCGAGAACGCGGAGTTGAAGAGAACTTTAGAAG AGAAAGACAGACAAGTGAACGATATCAGTCGACAGCTTGGCCAGAAAGATAAGCTTCTCGGCCAGCAGCA AGAACAGATTGAAAGTTTGACGCAACAAATGCTTCATCTCAACTCATTCAAGACTCAGTTGCAGAACAGA CTTGAAGAATCAGGGGGCTCTAACATGGAACTTGAGTCACAAATACATGAGCTTAGCCAGAGACTGAGTA CAGTTGGAATAGCTGAGGCGAACTTAGCAGCGCACATATCAGCACACGACAGAAAATTAGGCAAACTAGA AGGTCACCTTCACACTCCGGACAGACCATCCTCACTTGGAGAGGGTTCTGAGGATGTCCAAACCATTCGC AGTACTCTAAGAAGTCTTCGTAGTAATATCAGTAGCCACGACCCTAGCCATCACCTATTAGATTCTTTAG AACAGGGTATTGTATCTATCATGGATCAGCTTCAAGACTCACATTATAACAACTCTCGGCCAATCAGTGA GTCTAGCTCGACGGAGAGCGCCATCAGGAGGTACAACCAGACCAGGTCATCTCCGTCTGAGGACACTCTG AGTGACCATAAAGAATCACTTACAAGCTTAGACAGACTGAGTCCTGCAAATAATAACTTGTCCCAGCCAT GTACCAAGGTTTTATATTTCACTGAAAGAACTGTCACACCATTCATGTCGTCGATACCAAAGAGATTAGG AGAAGTGACCCTTGGTGACTTCAAGCAGATCTTTGATCGAGATGGGGCATACAGATTTCACTTTAAGGCG TTAGATCCGGAGTTTGGAACGGTCAAAGAAGAGGTGATCAATGATGATGACATACTCCCTGGCTGGGAAG GCAAAATTGTAGGCTGGGTAGATGAAGACACAGGCTGATGCAGAGGGATTGGCTCCACTACGCAGAATAG CTAGTTCATGTTAAATACCCTCCCATTTGAAACCATGATTGTATAAGGATTATTTAAAATCCATCGCCAC CTCACAGCTCATGAGTGGTATGTGACCCGATGTGGCAATGAAATACAACCTTTGATGTGAACTTAGATTC GTGGAACACACTACTGTCTGAATCAACGTAATATGTGTATAAACCTTGAAATTTGTAACTAATAAAACCT GTAATGGTAATCCTCTCTATAGGTATAACAGAGCTGCCAAGTAGTAAAGATTTTCCGTATTTAGTACTGA AAAATGAGAAGAATCGGATGGCTTCATGCAAAATACTGATTTCTAAAGTGTTAGTTTTATGTGTTTTCAT ATGGTTTTTCTTCGAAAATACTGATTTTCAGCTTTAAAGATAATGAAATGTTCTTGTTCAGGTTGGCAGC TCTTTAAAACTATAATCACAATCCTATTTTTTTGGGGGGGGGGCAAGATGATCTATAGGCTGCTGTACAA ATATACGAAATAGGGGAGGAGGAGGGCTTGTATCCCGTATCCCACTATTCCCTACCCCCATCGCTGCCAT GACTAATCATCGTCAAATGCTATGTTGACAATATGACTTTTTGTATTTAGTAACTGAAATGTCTACCATA TTGGGATAGTTCATCATTGTAAACTTTGCACATCTTATATCGCATCTGGATGTTTATGCACTGCAATTCA CACAATGGCTGTTTACCATACTGGAAGTTGATTTGTCTTCTTGGATAGTATAACCAATGCCCATGGTCAA CTCGATTTCTCTATAGATCCGCCGAAAAATATTTTCGATTTCATTGGAAATGGTGGTGACGATTCTGGTG ATGTTCTTCCATGTGATTAGATTTAGGATGAAAAGGAACTAGTACTGACTGATCCATTATTTCTTTGAGA AATTTCTTTAATTTGGGATAGTATTAACTATGCCCAAAGTCAACTCGATTTCTCTATAGATCCCCCGAAA AAAATGTTTGATTTCATTGGAAATGGTGGTGACGATTCTGGTGATGTTCTTCCATGTCATGATTTAGGAT GAATATGAACTAGTTATGACTGAGCCATTATTTCTTCAAGAAATTTCTTTAATTTCCATGGTCATTCAGT GATTTTTTTTTTGTGGGGGGGTCCATTATCATGTGTGCATACAAGTAAGGTGTTTTCTTCCTGGGGTTCA GGGGGAAATTTCATGAAACAATACGCAGTTGTTTTCACTAATTATTGTTATAAGCTACTGCAAATCCATG CCCCTGATTAGCTCAGAGTAGATACATCAGTGAAAGACAACTGATCAAATTTTTAATCAAATTCTTGAAT GATATTCTCATCTTCCATCTGATTTTTGTAATGCTACAGTCACACCGACAAAACCAGCTCTAGACCCACA AAAGCTGTAACTTTGTTACCAATGGCATACCATAGATCGGTTTATTACCAATGGCACTCCATAGATTGCT TTGGAGATGGTTTCTTGATGTGACTGAGGCATAAAGTGATAGGACTTCAGTCACAATTGAAGTATTGCAT TATGTTTACAAATATTCTAACTTTTTTACCCTCTTTAAAGTATTTCACGCCGATTTCATGCAACTACTCA GAGAAAAAAGAATAAACGGAGGCTTGGGGCGATTTAATCCCAGAATTGCTCAAAAGAGCCCGGGAAAATC CCAATTCATTTGCCATATTAAAGCTAACCCAAAATGTTGGAAATTTCATCAAAATTTGAAATAACTGTGT ACCTGAATTTCAAAGCTCTGCAATATTTGGTGAAAATAGTTGTATACACATGGTCATGCATATTCATTAG GTGGGCTGATGATGTCACATCCATTTTTAGCCTGGAGTACCCCTGTAATCAGATTCTAAAAATATTTTGT TTCCCTGAGCTTGGGGGGGGGGGGGGATAATATGGATAACACTATTCTACATTTTCTTCTAAGGCATAAT GCACCTGTCAAGTTGTTTTTCAATCAGGAGTGCTCAGTAATATCTAACCTGCAGTTTGCAATGCAGTCCT TTCTGTATGCTTTATTCATCTTGTGCTCTTTTATGAATTGGTAATTATACCATATGCATGCATTTGGACA GTATTATATTTATTTGTTTTGTACTAAAATTAGTTTTGGGAATGGGATAATGGTGATGGAAGATTCCCCA GTCCAATGCTGTAGTATCGATTTTAAGAACTCTAAGTCACATGTATCTGGTTCTTTCGGTTTGAGATAGG GGAGTCATATTGCCATATTGTGAGATATACAGTAATCCTTCCAGTGTTTGTAGCTTTCTGTGCATTTGAA TTTCTTCTGTCAATTATTACATTATTTATTAAGTTGTTTCCTGTTTTTCACTTAAGTGACATGCATGTTA TTTGTCATCTATTGCCAGTCTTCATGAATAATGCTTTCCTGTAAATTATTTTTCTTCAAATATTCACAAA GATATATGATCAATGTACAGCGTTGAATATAATTTTGAGAGATGTTGATGATTATGTTGAAAACAAAAAT ACAAATATACAAATTCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds