Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603426.1 PREDICTED: Lytechinus variegatus ER degradation-enhancing alpha-mannosidase-like protein 1 (LOC121410984), transcript variant X1, mRNA AGACTAAACATGAGACCTCCTACTATATGTGACGTAATCACAACAATCCAGTAGTTCCGTGACACTTGGC ATTTTTCTGAGAATAACCAAGGAAAATATTAACAACATCAGGAGTCATGAAGTGCTGACAATGGTCCAGT CCAATGTAGCTATGACATTTTTCAGTTTTTGTTCGTTTCTTGGATGGTTTTTGTACATTTTGGTCGTGTT TACTTCGCAAGGACAGAGTTATGTTTCGTCGTGGTTTTCGAACTCGTTATTTGTGCGAAAGCGAATGTCA ATATGGCACGACCATAAATATTACCATTTTCCTGAATCAGAAAGATTGCGACGAATTGAGGACGTTAAAC GAATGTTTCAATTTGGCTACGATAATTATATGAAATATGCATTTCCTTTAGATGAATTAGATCCTATACA TTGTACCGGTCGGGGCCCAGATCGAGAAAATCCGGGAAATTTAAATATTAATGATGTTCTTGGAGACTAT TCATTGACATTAATAGACAGCCTAGATACTCTTGCAATAATTGGGAATGCTAGTGAATTCCAGAAAGCTG TGCAGCTTGTTTCAGATACAGTTTCATTTGAGAGAAATTCCACCGTCCAAGTATTTGAATCAACAATAAG AATAATTGGAGGATTATTATCAGCCCACCTGCTTATATTAGATCCCAACAAACCATTAGGGGATCTAGCG CCTCCAGACTATGATGACAACCTACTTCATCTCGCACATGATCTTGCCACAAGACTTCTTCCAGCTTTTG AAAACTCTACAACAGGGCTTCCCCATCCAAGAGTGAATTTATGCACAGGTGTCCCTGAAGGAGGGGTCCA GGAAACATGCACTGCTGGAGCTGGGTCCTTGCTCCTGGAGTTTGGGCTCCTTAGTACCCTGGTTGAGGAT CCTGTCTTTGAAAGCCTTGCCAGGAAGGCAATGACTTCATTGCTTGAGAGAAAGTCAAATCAAACTGGCT TGCTTGGTAATGTGATGAATATTCAGACAGGCCAATGGGTTGGAGTTCAAAGTGGTCTAGGAGCGGGGCA AGATTCCTTCTATGAGTACCTATTGAAGAGTTTCATCATGTTTGGGGATCAACAGTACCTTCATGCATTC AATGAACTATACAGCAACGTCAAGAAGTACATGAGAAAAGGACGTAAACTCTGCAGATCTGGTGTTGGCG ATAGTCCCTTATACGTGAATGTGAACATGAACACAGGAAACCTTATGAACAATTGGGTCGATTCATTACA GGCAGCGTTTCCTGGAATCCAGGTACTGGCTGGCGATTTGGATGAAGCTATATGTACACATGCTTACTAC TATGCCATCTGGCGCAAGTTTAGTGCCCTCCCGGAGAGGTTTGATTGGTCCCGTAAGAATGCTAATGTAC TCTTTTACCCTCTGCGTCCAGAGCTTGTAGAATCTACTTATCTTCTATATCAGGCAACTGGCCATCCGTT CTACCTCTTTGTTGGGAGCGATATAATGGATAGCATTGAGACATACACAAAGGCCAAATGTGGATATGCA ACTCTTCATAATGTTATCACCAAGACAAAAGAAGACAGAATGGAGAGTTTCTTCCTTAGTGAAACATGCA AGTACCTTTACCTGTTGTTTGATAGAGATAACTACATCAACCGAGCAGCTTCTAGGTATATATTCAACAC TGAAGGTCATGTGCTTCCTATCAAGAGCCAGTATAGATCTAAGGATTGGTGGCAATATAACACTGATAGC TGTTTATTCAACAAGTCATGTGATAAAGGAAAGGATCAAAATAATACAGAGTGCATCGGTGTATCAAAGC ATTCACTGCCCCTTGACATCTCGTATCTGGATCAGATTGATCACATGGTCGGAATATAGCTGAATCTCAT TGCCAGTAAGATTGCCACTTCAAGAACATTTAATAGTAATGTGTTACATCACTGAGTGGCCAACTCTTAA TCCATGCACAAAGTCAATAGAGAAGCAGATGTGTCCTCAGATAATTATGAAATAGCAGCATCAGATGATT ATTTTTTTACAGTATTTACTTTTACATAATTTATTACTTGATGATGATGCCTTTCATTTTGTCAATTGTT TATTTTAAGGATTTTGATCATTTAATATTGATTAGTTAGAATTGAGTTCTATGGGGTGAGAGAGGGGGAT AGACTTGAGCAAAATAATCTATAAGACCATACACTCTGTTAGACATGATACAAGAAGCTATACAACAAAA CTCAGCAAAATTTTTGTGTACAAATCCATGGTACAGAGCTAAACAAAATTAGTCCTTCACTAGAATTTGT CATGACTTAATAATGCCAATATTTTCCTTTGTCATAACTGTACAACTTTGGATAATTTGTTGAAGCTGTG TGGAGCCAAAAAATACCATATCTTTATGGAAATGTTGCTGAGCTTTGTTGTGCCATACATGTATCTGAAC AAGGCTTTATTATGAGGCACTTTGTCAATAGCCAGAGTCTGGTCTTTTGAGCAGGAATCCAGCAAGCAGC TATTCATTCCTCATTTTTTTCATCATAGACAAGATAATGGGAAAGCTGCTGTGAATTCCTGAGATAAAAT TGCCTTTGAATGAAGAATCCTTTACTCTCAGTGCAACAGGGTACTCTACTTAATAATTTGCTGCTTGATT ACAGGATTTCTCTGTATTCATTTTAAATGTGATTACATGTGAGTTGTTATTTTATCATTGATATTGTAAC GTTATATATAAATAAGTGATGCTATGAAGTATATTGGTGAGAGGTAGAAAGTTTATATATAAATCATGTG CCTTACAATTTTATTAAGTAAATATTGCATTTATAGCTGATGATTCAGAAACAATTGTGCAAGGTCATGT GTATTCTAAAAGTAGAGTTAGTAGTAAACCCAGATATTGGACATATCATTTCCCTCTAGTGGATGTTTCA CTTTTAGTTGTAACTTAAATTAATGACTAGATGCCAACATGCATCCCCTGATCATAATCATGGGGCAAAG TGTAACATTCCATACAGTGGCATAATGAACACAAAATTCTGAGGGAACCAGATATGGCGGATAAAGCAAG TTTTATAAATATGTGAATCAGGCAAAATATATAACTTTGGTTTTGACATTGTATTCATAAAATAGTATAT TTCAATACTGTTTCCCTTTTTCTTACAAGGTCATGAAACTAACTTTTTTTTTTTGGGGGGGGGAATGTTT GTTTGGGGGGCTTGCCCCCCATCCATCTGGATATAAGATTCAACCAAAACCTGCAAAATGGTCGAGTTGA ATGTTTTTGACTCTTTGAAAATTTGTTCTCTAGCTGGTTTGTTTTTTAGACATTGAAAGATGGTGCTAAT TCTTATAACTTTGGACATGTTTAAATTATTAGGAACTTAATTTGTGATGTACGTTTAGTGACAAAATGGT GTTTCGTTAAGTGATTCATTGAAATTACATGTATGTGAAACTTACACAAGGCGAATATGCGTCCCCTATT GAAAGAACAAGTGGAACCAAGGATTACAAAATCATCAAATTGACAATTTTGGTACAATTCCTTATACATG ATTGAATTACAGAGATACAGATATAGTAGTTTTAAAGATAGGATGTTTAATACTAAAATGGCAAAGCTTA AATCACTTCCATTGATATTGCTTGGTATTATTCCATGATAGTATTGTATTAATGTGGATATTTAATTTCA CAAATTCATACTGAGCTTGTTGATGTGAAAGGAAAGAGTAAGCTTGAACTTTCTGATGTACTCTAATCCC TTGTCTGATCAGAGCATTCACGTGCCTCTGCAAGGAGCATCATTGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds