Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041608401.1 PREDICTED: Lytechinus variegatus multiple C2 and transmembrane domain-containing protein 1-like (LOC121415226), transcript variant X2, mRNA CAGAACAAGCAATTGAGAAATGGCCAAGCCCACTGTTTCTGTGACACGAAAACCACTAATTACCAGAAAG TGGACAACACGTGCTTGTGCCTCTGAGCGTATCATTTCTACCAAACCCACATACACATGCCATTATCAAA GCCAATTAATCTAATCACCTAATGATGATCATCGACTGTATCCTTCTCCAATAAAAACCCATCAGTTTCT ACTATTGCACCGATCCCACCCCATTCTTTGCTTGATCACTGTACACACATCACTCTTCATTAGGTTGCTG CATGAATATATTCATTATCCACCCCTACCAATTACCACCAAAGAATCTTCAAGCCGGTTGTCATGGCTAT AAATACCCCGCCTCTGACGACGGATGGGAGGCCTTTCGTCATCATCACATCCTGCTGGCTTTAATACCGA GATGTGTACCGACGGACAATGTGTCTCAACGTTTTGTTGATTAATAATTCTGCAGAGGCTTGAAAAGTTG GTGTGCATATGGATTCAGAAGGACTTACATGAAATATTATTGATGGGACTAATGGATAAGGATTGTATCA CTAAGGCTGAAGATCTGGAATAGGACACTGGTTTTGTTGGGGTGGTTTATGTGTTCACCTGGTTCTAACG GTCAATACCAAAATTCAATATCATGGTCAAGTACTTTTCAGGGAACGATGGCCGGAGATGGTGGAGAAGG CTACCAGGTTCTTCCCGTAAATCGAAGACGATGGACAGCGATTCAGAGGATCAGTATGGAGAAGACGATA CCGATCATAACGATCATCGGATTGGCATGGACGGCGACGAGCCCCTCACCACCTCCACACCGCTGTATTC CCACGGCAAGAAGAAGAAGAAACGGCCGGGTCTGTGGAAGCGCTTCAAGCACAAAACCAAACCCATGCGC AAGATCAGCACTCAGGTCATGGAGAAGGCCCACCACAAGTCGCACGGACACTCCGACGACGAGAACATCT CCTCGGCGAGATCCCGCTCTTTCGTCTCCAAGTCAGAACCGCAACTCCACCATGACTCCAAGAACTACAA CTCTCTTCCACGTTCGCACCGATTCGGTGGATCGGTCATCGATCGTACGAAATTGTTTGTTGAAACTGAT GGTAGGCAAACATACTCCAGTGATTCGGACACTGGCGCCAGGACTAACGGTACTGGTATTGTTAGAAGAT CTAGTTCCTCGTCTTCCAGGAAAATCTTGTCTTTCGATGTGAACAGTGAGTCTAGGCATTCTAAGAGCCT ACCCACAGATGGAGAATTAGATATGGATGTGCCTCAACTTGCTGCATCGCCAGCAGCAGTTCGTAAACGC CTTATGGATAAGAAGCACGGAGACCAGTCCTCCTCCGCTCCCGAATCCAGCCCCCACCGGACGACATCCC TGCCCCTCACCAACCAAAACAACAACCAACAACACACCTCAGGGGGCAGCGAAGACGACTACCATGGTAG GCGGAGCCGGGGGTCGTCGCTGGGCGCTGTTACCATGGAAACCAACCAGCGGGGATCGGGGGATGATGCA ATGGTGGGGGTGGATGGGGGGTTCTTGTCGACGCAGGGGATGAGCTTGGAGGAGATGGATGAGCGGGTGG CAGCAAGGTTCAGTGGGGTTCCTCAGCCGGGGCACTTCTACCGGTTAGAGGTCCATTTGAAAGAGGGACG GGATCTAGCAGTCAGAGATTGGAGTGGCTCATCGGATCCCTACATCAGGTTCAAGATTAACGGCAAGCAG GTTTATAAATCTAAGACCATCGTGCACAATCTCAATCCGAGGTGGAATGAGGTCTTCTCCGTAGCCATCG AAGATGTCACCAAACACCTTCACATCCACGTCTTTGATTATGACATCGGTACTTCTGATGATCCTATGGG CAACGCCAAGTTTGACCTCATGACACTGAAGACGGGCGAACCCACAGAAGCAAAGTTGGACCTATCAGAT GATACGACCGATGAGTACCTAGGCTACATTGTATTAGTCTTCTCATTAATACCAGTGAATGAAGGGGAAT ATGCTGCTTTCAATCTTCGGCTGAGACGAGACAACGAGATGAGGTCAGGGAGTCAGAGAAAAGGGAAATC CCAAACATGGATAGGGGTGGTGACCATCACACTCCTGGAGGGACGGAATATGGTCCCTATGGATGATAAT GGACTGAGCGACCCCTACGTCAAGTTCAAACTCGGCGGAGAAAAATGGAAGTCAAGGGTTGAGAGTAAAA CACTAAATCCAAAATGGATGGAACAGTTTGACCTGAGGATGTACGAGGAGCAATCTTCAATGCTGGAAAT CTCAGTCTGGGATAAAGACTTGGGATCTAAGGATGATATCATGGGAAGGTCACATATTGACCTTTCGACC CTTGACATGGAACAGACCCATCAGATGACCATTGAATTAGAGGACAATGCAGGAACGCTGGACATCTTAC TGACCATCAGCGGTACTGTAGGAACAGAGAACGTTTCGGACCTTGCGAACTATAAACATGATCCAAACCT GAAGAGGGAGCTCTGCCTCAAATATGGGCTGCTCAACTCTTTTAAAGACATCAAGGATGTCGGCTGGTTA CAGGTCAAAGTAATCAAAGCACAAAATCTTCAAGCAGCTGATATTGGAGGTAAAAGTGATCCATTCTGTG TGTTAGAGTTGGTCAATGCCAGACTACAGACTCAAACAGTTTACAAGACATTACATCCTGAGTGGGGAAA GGTCTTTACATTGCAAATCAAGGACATTCATTCCGTATTAGAGGTGACGGTGTACGATGAAGATAAGCAT GGTAGTCCCGAGTTCCTGGGGAAGGTAGCAATTCCAATCTTGAAGGTGAAATGTGGAGAGAGGAGGCCGT ACACACTGAAAGACAAGAAACTGAAGAGAAGAGCCAAAGGAACTATTCTACTGGAGCTTGACTTCATCTA CAATGATGTCAAAGCTGCTATTCGAACCTTCAATCCAAGAGAAAACAAGTATATGGAACAAGAACAAAGA TTCAAGATATCAGTACTACAAAACAATCTCTCGAGGGTGAGTAACATGGTAACAGACATAGTGAGCGTTG GGAGATTCATTAATAGTTGCTTTCAATGGGAAAGCAAGCTACGTACAATCATTGCATTCGCTGCCTTCCT CATCATTGTATGGAACTTCCAGTTGTACATGGCTCCACTGGCAATCCTAATGCTCTTTACATGGAAGTTT GTAGAGCAATGGATTGTCTCTTCGTACACCAAACCACCGGATGAGGATGACTATGAGGATAGCTCGGGAG AGGAAGATGAGGCGGAGGAGAAAGACAAGGAGAGTAAAAGAAGTTTCAAGGAGAAGTTACAAGCAATAGA GAGGGTTTGTCAGACAATACAGAACACCCTCGATCAAGTAGCATGCCTTGGAGAGCGAGTCAAGAACACC TTCAACTTCACCGTACCTTGGTTATCCTACCTGGCCATCATAGTCCTGTGCATAGTGACTATCGTACTCT ACTTTATACCTCTTAGATATCTCATTCTTGCGTGGGGTATCAACAAGTTCACCAAGAAGATCCGAAAGCC TCATGCCATTCCAAACAATGAACTATTAGACTTCCTTTCAAGACTTCCCTCAGATACACAACTTAAACAG TATCGAGAGCTCAGGCCTGAACTATCAAGAACGGACTCTCCTAAAAAGAAGAAATAACCAAGTGGCTCTT CATGTTTGAAGAAAATGAAATATAGGTTCTCTTGCTACTACATGTATCTGAGCTGAAGACT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds