Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038209364.1 PREDICTED: Patiria miniata pleckstrin homology-like domain family B member 1 (LOC119735599), mRNA CATGCAGAGTAGTGAGCTGATAGTGACAGACCACGTGCTGACCAGCGAGGAGCTCAACGACCTCAGGATG AACAGCGGCTGGGAGGACAGCATCAAACGCACACAGAGGATCATACAGGATGGTTCATTGGAGTTGACAG AGACCGGCAAGGCCCTGAAGGTCCAGTCAGAGCGCCCTCACTTGGTCAGTTTGGGCGGGAGTCGGGTCAG CACGGCCATCACATTACTGCCGCTGCCTGAAGGCAAGACATGCATAGGCACCATCGATTCCAAGAACCCC CAGGACATCGTCATCCAGGGCAAGGACATCCGACCCGAGCAGTGCTGCATCGAAAACAGGAACAATGTGG TTACGCTGATCCCCATCGGGCCGTGCACCGTGGACGGGGAACCGGCTACAGAGCCGACAAAACTCACCCA AGGTGCTATGCTGTGCTTTGGCAAATCCTGCTTCTTCCGATTCAACAATCCCTCTGAGGCCAGACGGTTG AAGGAGAAGACTTCGCGAGGTGACACCGCCAGCCAGCAGACTACAGCGACAGACCGCCTCAATGCCAACA CGAGGCCCAACACGAACGGCGTAACAACCAACGGGTACACGCCGCCCCGCGTGCAGCCCTTCCCCACAGT GAACTTTGGCCGAAGTAATGCCAACAGCAACCATAATGCTGCCACAACGCGCTCAAGCCACTTAGAGCAG ACTATCGAAGCTGAGTTGAAGGAGATCATGCGGCAGGTCTCGACGGAGGACGAGTTCATGAACGAGACTT ACAGCAACCAGTACGCGCTGCTTGACGGTTCGCCTGACAAGGACTATCTGAACCACCCCCGCGACGTCAT CCCAAGCACCTCTTCGACAGACTCCAGCGGCAGCGAGATGTGGCCTGAGGCCGGCAGCAACCACCGCGAC AGCGTCTCGCCCTTGTTTTTTGCCAACCACAGCGACATCCGAGAGACGGCCATTACGGATGACAATATAG ATGGTGAAGACAGCGAGGCTAATGCCACCAGTGAGTACCAGCCCCCTGTCAGCACCATCAGGTCGAAATT TGAGGATGCCATCCGGAACAACAGCCCTAGTCCAACTCGCAAGCACTTCCACATCCAGACCAGCCCACGT GGGACCCTGGAGCGCGACCACCATAAAATCGGTCCCCAGTCCCCCACAAGAGTGAAGCTGGGACAAAGCA GTCTGTACAGCAATAAGAACGCCCTTACATCACCCACGCGGCGGGCGGACGGCGAACGATCGTCCAGCGA CTCCAGTCTGAGCTCTACCTCACTCACAACGGTCACCAGCACTACCATGACAGCAACCACGGACAAAGAC TCAACCGGATCAGATAATTCCGGAACCAGTCTGTCGTCATCACTGTCAACATCCTCGTGGAGCAAAGCCA CAGACTCAACCGCCAGCAGTGAGGCGCCCGGCTCAGCCAATTCCGTCGTGAGACGGGAAACCAGACAAGA GTCTCAGAAGACACCGACACCTTCCTCCAACCCCACACCAACCGCCCAAGACCAGCGGTTCTTCGCCCCG ACTGACGGCGACATCCGCCAAACGCTGATTGTCGACCCAGATGACTTTGAAGATCAGACACAAAAGGAGC TGTGCAAGATTCACATTCAGGCCGTGGCAGAGCGGAAAGAGGCGCAGAAGCTGGCCTCTCTGGAGAGGCA AAGAATGGAAGAAATCCTGAACATCTGCGCCGAGTACGAGGCCCAGGAACGAGGAGGGAAGCCGACAACT GCAGCCCCCGTCCCTCAAATCCCAACCCAGTCCGCCCAAGAGACTCCAACATCCCCTGAGAAACAGCTCC CCCAACAAAACACTGAGAAGCCCCTCATGACAAGCAGTCCCGTCAACGATCGGCGGGCAGCAGTAGACGC CAGTCCGATATCAATCGCATCTGACGCGGGTATCAAAGTTATTGTTGATTCACCGATCGTCAGGACAAAC ACGTCGATTCAGGAGACTCCTGCAAAAATCCAGCAGTCTGTCCCAGCACCGACGTCACCCAATAGTAATC AGAACGTGTGGTATGAACGTCTGAAGGACGACGGCAGTAAAGTGCCCTCTGTTGACGCCGCCACAATGCC AAAGATCAAAGTGGAGCCCGCACCACCCCCGAAACCGCCGCGGTTGGGAGTGCAGGACCAGAACTCGCTC AGCCCCGAAGGGAAGCAACTCAGTGGCCAAGACATCGTCAAGGCCATCGCTAAGCTAGAAGAGGCTCGCT CGGACTCCATCCATAAGATTGAAGATCTGGAGCGCAGACTGGACGACCTTGAGGTGCAGGAATCAGAGAT GCTGAGAGAGGAGCGCCAGCAAGTTGACCAGGCTCGCAGCCACCTCCAGCACCTGGAGCAGGTCCACCTG GAAACAGAACGGCAGCTGCAGGCATGCCCCATAGGAGAGACAGCCCGCAAGCATGCCCTGCTGTCCCAAT ACCAGAGGGAGGTAGAGAAGTTGGAGCAGGAGCGCAAGCGCTTTGAGGATCTGGAGTTCCAGCAGCTGGA GACGGAGGCTAGGATTGAGGAGGAGAGGGAGATCATGGAGCAGGAGCTGAGCATGGAGGAGTCCAAGGAG GAGGAGAAGGTTAAGACTAGGAAGGTGAACGTGACGGACATTGACAAGCAGATGACCCACGTCATCACGG ACGCCAAGGTGAAAGCTGAGCAACTCGAGCACGACCAGAAGGCCACGGAGCAGGAACTGGTCAAGGAGAA GGAACGATTAGCAGGCATCGAGAAGGAATATAACAGCTTGGTGATGTACTACTCAAGAAGGTCAACTGGA GATCAGGAGGAGACACCAGAACTGAAGAAGATCCGGGAATTGGCCGAGCGTCGCCTGCGCCTTCAACCAG AGATGTCCCTGAGTGACGAGTTCCTAGCCACACGCAAGTTCAACTCCCTGCCCAGGAACAGTAAAGGGGG AGGGGCCGCCAAGGGCCCGCCCAGCGACTCCTCCTCCAGCCCCTGCCAGCTGTCCCCGGCCTCCTCCCAC AACAGCCTGCCTCGTAAGGGGGACACCCTGGGAGACATCGAACGGCACCGCCGCATGACGCTGGAAGAGA AAGGAGACCGACTGATTGAGGAAGAGCGCCACCGATTGGAGGAGCTCTGCCGCCAGGCGACGAAAGAGGC CACGATCCAGTGGGAGGAACAGAAGCAACGAGAACAGCAGCAGCTGCTGACGCCCGGTTCCCCAAAGCAA ACCGGTGCCCCGAATACCATCAGTCCCAGTAGCTCCCTGTACAGCACCCCGCGTCAGTCGGCCGGCTCCC CCACCCATCCCCCCTTGGGTGCGGACTCGCCTGCCGCGGTGATGTCTAGTAGCGACTGCGCCAGTGTCTC AAGCTTCGAGAGTATCGAGGGGCACTTGGAGACGTCCGGGGTGTACTCTGGGAACTCCACACCTTCCAGA ACATTCAGCACAGGGCCCAGCTTCACCAAGGAGGAGCGTGAGAAGCTAGCGGAGATGGAGCGTCTCCTCA AGGAGGCCCAGGCGGAGAAGCAGGCCCTCCTGAACCAGCAGGTACCCCCCAATAAAGCAGGCCAACAAAC CCAACCCCCCAATCGCTTAAGACAAGCCGAAGGGCAGCTCCTGAGGGAGGAACAGCGGAAGAGGGAAGAC CTGGAACACCAGCTGAGGGAGGAGACACTCATGAGGGAAGAGCTGGTGCAGACCCAAGTCCGGATGAGGG AGAAGCAGAGGAGCGCACAGTCGAGACCCCTGACAAGGTTTCTACCGATCACCAGTCATGACTTTGATCT GAGGGCCCACATAGAGAACGCAGGACACAATGTGGAGATGTGCCAGGAGGCCACCCTGTCTCGCAACACC TGCCGCGGCTACATGATCAAGATGGGCGGCCGCATCAAGACCTGGCGCCGGCGCTGGTTCGTCTTCAACC GCACCAAGCGCTCCTTCCTCTACTTCTCCTCGGACCGGGACGAGTCCCGGCCCAAGGGCGGCATGTACTT CCAGGCCATCCAGGACGTCTACTTCGACCACCTGCGGCCCCACAAGAGCCCCGACCCCGTGCTGACCTTC TGCATCAAGACCAAAGAGCGGACATTCTTCCTGGTGGCTCCGACGGCCGAGGCCATGCGGATATGGATGG ACGTGATCGTCACGGGGGCGGAGGGGTACAAGGAGTTTCAGTGAAAGCTCGAAATTGACCTGGAATGGAA GCTTGCATGACAAACATCCATGACATGAGCAAGACTGCGTCTTGACCTCCAGATTCTGACTATTCAGTGG GCACCTTCTATCGGGTCTTCGGTAACCCAATGTTGTTAAATGACAAAAAAAAACAATTGCAGCTATTGAC CAATCAACAATTTCTGCTCTAAATCACGTCACAACTTCTAAAAGCGGCTCCGATAAGCTGGTGTACAGAC CGCATAAAAATTACATGCAAGGATATATCAGAAATGTGTGGTTTGGCTCTGCAAGCATGAACGTCTGATC CCAAGACTCGGAAAACGATTTTCCATTTGGAGTTTGAAGTTGAAGTTTCCAGGAATTGTCATCCAATTTT GATCAACTTTTTTGGCTTGTTGCCCTGTGACCTAATATCAGTAGTGCAACTCGGGAATGAAACGTCATAC CTTTTTGCCTAGATTCTGGACGTAATTTTAACTGCATTTATTATGAGTTTTATGATCACGGAAAGGACGC ACTGTGTTCTGACAGCTGTTAACTTTTGAACCTGTGAGAGTTTCCCACTAAATTTGTTTTGTCACTGCCC TCCAGTTTGGATATTAAGATTAAGAGTCAGAGAACAGTGGGAATTTCTACTGCAGCTTTCTGCTTTGACG ACCTTTGCTCAAGTTAATGAAAAGACAGTAGGGACTATGTGTTGCAGGTTGTGTATTGTGAGCTGGGCAA TAAACAGGTTGCCAGTCTACCAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds