Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038208437.1 PREDICTED: Patiria miniata RAD50-interacting protein 1-like (LOC119734852), transcript variant X1, mRNA ATGGGCACCAGTCCACGCCATTGAATTACACGTAAACATTAAACGTGGACGTTTGACACAAAATCATGGA GGAAGACACGGCAAATTTGCGCGATGAGGTTTGCTGTCTCATAGACGGACAGATCGGGGAGGATGTTAAG ACTCTTAGTAAGGTACAGGAGCTGCTGCAAGGTGCATTGGATGAGAAGAAAATCCTAGAACAGCAGTTGA CAGCAGTCAGCACCGAGACACCGACCAGAATACAGGGCGCCCTCCAGGGCGCCGAACGAGCCATGCAGCA GATGGAGTCGCTGACCACCTCCAACAAACAGTCCCGACGAGCTACCAACAGCCACCTGAACCGGGCCGAG CCCATGGTTCAGGAGCTCAGGCAAATGACGGAGAAAGTACAAGAGCTGGAGAGGTGCATGGAATACATGA AATGGTTGGCGCTGGTGGAGGAACTAAGCTCCGAGATCCAAGGCTCCCTCCTGGTCAACTCCGCTCCCTT TAAACTCTTCCACAGCTCGGAGGTTCAGAAGGGCATCTCGTTGGGGGCCATGCCCAGTGCGGTGGCGCAT TTCGCCAAACTGGCCCAGGTCAGTGAGGCCGTGCGGGGCTCTGCGTGCAGCAACCTACTGGCGTTTGTCA CCTCCACGATCCTGTTCTGGTACAAGATTCTGAAGGAAAAGTTGTCCAGTGAGTTTGATGAAGTCTTGAA GGCACTCAACTGGCCGTTTGTTCACAGTGCGGTGCCCATGCCTCCGCCACCTGCCCAGCAGATTGAGCTC AAGAACCGTGTCGAAACGCTGTTTGGACAACTCGTCAAACTGCAACTTCCAGATACCTTAGTCTCGGAAG ATTTCTCCACCCAGGAGTATAGTCGTCTCCCAGGGTCGCGACCTCTTCTGCTGCCTCTTCATCTGATGCT GCAGCCCTTGCGCAAACGGTTTCGCTATCACTTCCACGGAAAGAAACAAACCAACGGACTAGACAAGCCG GAATGGTACCTGACACAAGTCTTGAACTGGATACGTGACCACAGTGACTTTCTGGACAACACGATACAGC CGATTCTAGAGGCCGAGCATCTCTCACACATCAATGCAAAGGTGGAATTCACCCGTGGTCTTCTGAACAT CGTCGCGGCCAAGCTGGAGCACGATATCCCGGAGCTTCTCTTCGACGAGCAGCTTCTGTCCCACACCATT GATGAGCATCTGCTGTTCAATCGGGAGCTCAGGAACAACTACAGCTACCCAGCCGGCCAGCCGGACTGCC TGCATGTCCTGACCGGCAAGGAGTGCTTCGAGAGGTGGCTGGTCGTGGAGAAGAAATTTGCAGTCGAGAA GATAGACTCCCTTCTAGCTGCGCAGACAGCCTGGTTCCCTCAGTACAGAGACCTGGAGGAAACTGACGAT CTGAAAGTCCCGGAATGCGTGGAAAGCTTCATGACGTTGATGTTAGTCATTACAGAACGATACCGGGTTC TCCCCTCCCCAACCCATCACCTGAGGTTTCTGGAGTTGCAGCTGGATTTGTTGGATGACTTCAGGGTACG GCTGTTGCAGGTCATGAAGCTAGAGTCTACCGACCCGCTAGCTGGCAGGCACAGTGCTATCCTGAACGGC GCCAATTATATCATAGACATCCTGAAGGAATGGTCAGAACAGGTGTTTTTCCTCCAGCTGCAGTACTACA GCAAGGAGCAGGAGACAATGGAGAGCTTCAACAGTGCCTTGGAGACGCTGACGGCCAGCCAGGACATCAG CAAAATATCTCAGGGATTTCGGGATGGCCAGCTGGATGTCTTAGAGGGTACCGTCTTTGATGAGATTCTT CACCTTTACGACCTCCTGAGGATTGACATGACGGCGACATTGCAGAGAACAGCTGTCAGTGACATCAAGA GCAGAGCCAGACCGTACAGGAAAGACAAATGGTTTGCCATGCCTTCTCCTAAGGACTACATCGCTCCAGC CCTCTCTGCATCTCTCTGTGAGCTGCTGCAGACTCTTAAAGAGAGACTCCAGCAGCTGAGGCATCAGCTG TGCCCATCTGTCTTTAACACACTCTGGATGGGGATAGCCGAAGAACTCAATAAATTCATATATGAAGAGG TTATACTTGGCAACCAGTTCAACGAAGGTGGTTCTGTACAACTGCAGTATGACATGACCAAGGGCTTGTT CCCACAATTTGGAGACTACACCCAACGCCCTGAGAACTACTTCAAAGAACTCAAGGAGTCTTGCATTCTT CTCACCCTGAAGCCCGGCTCAGCCATCTTGTTGCGGGATCTCCTGTACCAGACGCTCCACGCTAAGCAGA CGATAGACCATAACACCAAGGACCCGTCCCCTGACGCCGCACTCAGAGACGTCGGGGTTTACCGACTCTC CCCCAAAGCTGCCGAACTTGTGCTGAATCTACGCACTGATTGGCCAAAGTAGTGACAAAGTGATTCGATT TCAAGTGTAAGTTATTGTAATATAAAACAAATTTATTTAAATTATAACAATTCATTGCATGACAAGTGGA GTGCAATGGCCTTGTGGTCTAGAGCTTTGAACTCATATGTAATTTTAAAGGTTGTGGGTTCGAGTCTAGA CTGGAGTTGTGATGTATGCCCTTGGGCAAGGCACTTTGTCACTCATTGCTTCTCCCCACCCAGGAGTAAA TTGGGTAGATGTGAAGGCAGAGATGGTCATGTGATTGATAAAAGCTGCTTTGCGCCGAAATGGCAGCATC GAGCTCTATACTCACCAGGGAGTTGAGATTGTCAGAGGGCCTTACCATTGTATAGCTAGAGGGGTGTTTT TTTTTTAATGAAATTGTTAGAAATATATAATTTTTGACTTTTTTTTACTCCTGTGGACCGAAAAGTTTTG ATTTTTTTTTTGACCAAATGGTCCGATGAATGGGAATAGGTATGTGATTGGGAGGTATTAAACACTCTGT TTAAGACCGGTTGGAGTCTGGATGCTGATAAATACCCGAGCCAAAATTATCAGCATCCAGACTCCAACCG GTCTTAAACAGAGTGTTTTAGACCTCTCAATCACACATTTATTCCCTTATTATTAAGAAGCGCAAGGGTC AATTTCAGGGAGCAGACAAGCATTGCATTTTTGTTAAGCATGAAAATATTTGCTAAGGGCCGGTCTCAAT TTATATCTGGACGAGTTCCGGACAAGTTGCAGGTAATGTCATTCCCTTTGTCTGGAAGAAGCTCTGCATT TGTCCCAGACATGTTCCGGGGACATTTTATTGGCAACTGCTTGACTCTCCAATACTGATAACTCCATTGT GGGGAGAGTGCGGGAAGTTGTTCAGAGTCCTGCAACTTATACCAGATACGATACCTCTGGAACCTGTCTG GAAATTGACCCCGAAATGAATTGAGAGGGGCCCTTATGGGCAAATGAACGTTTTTGTCCGTTAAAAAAAA TAGCATGACATTTGTTCCTGTTTTTCACAGGTTATGAGCTTCAGTAACGAGATATATCTTGTGACTGGTT ATTGATATTTTCTGCTTTGAATGCTCAGGAAATTTGTCCCTGATGATCTAAATTAGGAACAATGGGTTCA TTTTCAGAGATAAAACTTTTCTGAATTTAATCAGAATTCTGACTCTTTAAAATTTCCTTCCAAGAGCTGA TTATTCTAATGATTTCTGTTCCCCCCCCAAGAAAAAGTTAACTTTTCTTTTAAATTAAAAAAAAGTCAAC AAATTTTATAAAAACAGCACGTCTGTATTCCAAGCACAATTTTAACATATTATACCAGTAATCAGTACAG ACAAGCTCTTTAATTGGAGTATGGCTGGAAATATGTTTAAGCATTGATTTATGGCATTATATGTGAAACT ACTTACCAGAGCTTGCAGATGGTTGTACATGGGGATCCACTGCAGTAAAATCTTCTTTGTTGCGATATTA CTCTTCTTGACAGTTTCATTTAAAAAAAAAATAAAAGTAAAATGTGAATTGAACTACATTGACTACGGTA CTACCAGTGGCACGTTTTTACCTTGGATATGTACATCAGCACATATATATGGTGCAACTCGTTTCTCTCT ATCATGTTAGCAAAATCTGAATTATGTTTATCACATTTAAATTTTCGTCAGTAATTTCCAATCTAAACCA AGATGCCAAAAAACAATGAACAAAAATGTCTTGAAATGTCAGTCACAACAGATGTGGACGGAAAAGAAGA TGTCAACAGGTTCTGCAATTCAAAAATATACCTCCAAATTTCTGAAAAGGTTTGCAATGTTTTCTTTCTT CCAGAAATTAATAAATTTGAATTACTCTGAATCATAGTTATCTGAAGGACAGGACAAAACATGCAAATGC AGTTCCCCCCACCTTAATTCGATTTTTGGATTGTGTTCCTGACATTTATACACACATGTAAATAGTAAAT TGCTTGTTATGCCATCACCACTAGGGGTTTGGTCAGGAGACAACTCGACGGCTATAGAGGCATGATTTGT TCCTCCAGAGACCAGCTAATGGAAAACGAATGCTGTTTGATTTTTTAAGTCAAGTTGTCTTGGTAACTGC ATGTGTTCCTTCCTCCATGGAGCAAGGAACTGCAAGTTCTTCATACTTCAAGTGCAAAGAAAGAGCATCA AATTTTATTCATATATAGAACCTGCTTAATTAATCTTGTTTTGAAGCAATTATGTGTGTGATCTGTGTGT AACTTTAAGGGCACTTTCTTTTCATTGAAATCATTTAAGTGTACAGCTAGCATTGTAAAATTCTTAAATG ATGTAGGCCTACTCCCTTTACCTATCCACGGCTTTTTGCATGTCAAGGTCTGACAAATTGGTGACCTATC CCCGTCCCTATTAAATTTGCCGGCTTGGCAAAAAAGCTTATAAGCTTGTACATGCCACAAAACCTTGAAA GTGTGCCTAGGGGACAAGAATCGACCTACCTACCATTTACGGGACCGGGGCCACATTGTTTGAGTTGAAG ATTCATAAATTGATGAAGATGTTCACAACCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds