Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038199006.1 PREDICTED: Patiria miniata transcription factor AP-4-like (LOC119727140), mRNA CAAAAATTCACTTTCGGTAATCTATCACAAAAATATCACTCTGTGATAGATAGTATTATTAAATATAAGA TTAAGATTAAATCAGGGTGATTTTGATTTGGATTGGTAGTTTCAAATGTTAGATTGTTGCTTGGCGTAAG GATATGTCGTAACCTTGAGAGTAACCGCAGCTGACTGTGTGACCAGCTGTTTCCCGCGCCGCCACGATAC GGATAATGACTACACATACCCTTCAACCACGCCGGTTCAGCTGAGACAAAATAAAAACACTGTGGATTTT ACCTCACCAATTTTGCACTATTTCGGATCAGAAAAGGACGGCATTTTCTGGAAAATATGGCCTATTACAT GCGCAAGATGGAGAAGGCATATGTGGACCCAAGCGATATTTTGCCAAGCCCGATTGTGCCGACAGTTGGA AGGTGTTCTCCCAACAGCCAGAAGGAGCAGGAGAAACGCATCCGACGGGAGATTGCCAATAGCAACGAGA GACGACGCATGCAGAGCATCAACTCAGGATTCCAGTCGCTACGCACGCTGCTGCCAAACCATGATGGCGA AAAGCTCAGCAAGGCGGCCATTTTGCAGCAGACGTCGGACTTCATCTACCGCCTGGAGCAAGAGAAGACG CAACTGCTCAATCAGGTGATTCACTTCAAGCGCATCATGCGCAAGTACGACCGAGAAGATTCGGACTCGC CGTCCCCAAAACGCCGGAAGCGTCAGGACAGTATGATGGATGAGGGCATCGGCAGCCCCGAAAACTTTGA AGACACAAATGTTGATGAATTGAAACGGGAACTGGTGGATCTGCGTTGCCAGCTGGACAGAGAGAGGAGG TACCGCATGATTCTGGAGGAACAGAACAGGTCCCTGGAGTCGCAACTGTACCCAGAGAAACTGAAGGAGT TGGCCCAGCAGATCAAGCTCCAGGAGCAGAGGGCCTATGACGAAAGGAAGATCCTTGAGCAGCCACCACC CCAACCCCGTCCGGTCATCATGCAGTACCCAATCCCCCCTCCCCAGTCCCACATCATCAGCCCAGCCACC ACGCTGACGACCTCACGGCAAAACCTGGAGACCATCGTACAAGCCATCCGGCACCTGGAGGGCGACAAGA CGACGCCGGGAAACACGCCGCAGCAGACGCCCAGCCACACGCCCACCCCGGAGGATGAGGCGCGGAAGGT GCGCGAGGATGAAGAGACGCTAAGCGGCAACGAGGACACGTACAGGAAAGAGCACAGCGAGCGTTCGGTG ATCGTCGACGATCAAGAGAGCATGCGAAACTTCAGCAACAGAGTAACTGTGGAACTCCTTCATCCAATCG ACAGGCTCAAGACGCGACCCAGCATCATCGTGTCGTGAGAGTCATTTGTAGGTTGATATTTATTCCTAAC ATTTAAACCGTCTACTAACAACTTAAGTATTAATCTCTAATGATGCTAGTGTATAGAGTAGTTTGATATT TATTGGTGTATACTAGTCAAGGTACGTTGTTTAGATTCTATAAGTAGATTATAAGTGGTAAGTTTCTGTA GCTGATCCAGGGTGACATTTCTGGTGCGTTTTACAAGTACACATACGCACGTTTGTAAAGTTGTCTTATC AGTGATGTGCTTTGGTCATCGTTTTGCTGCTAAGTATCCAGATAACTTTACATGAAAAAAATACAACTTA TTCTAATTTGGATTACCGTCATGACCAGATACTATTTGAAAAAATGTTATTTCTGCAGTTTTAATCAAAA ATGCTGGTACGCTTCTAGGTTTCCCATTGGCTAGTCAGTATATGTTGAGTTGCCGATTGGCTGTTATGTC AGCTGTTTAAATGTTGACTTGCCCAGGTGAAGATACGTGATATGTCCAGTCATTGTGGCCGCGACGATAC TTGATTCATAAAATTTCTCCACCTCCGCAGTCACCTCCTGACCCCATTCTTGGACCAGATCCCCAAGTGA GTCACACAAAAATGTTCATCGTTGGCAGGATGGAATGACTTAGTCATAATTCTGTCTGGTACCTGTCTTG GGAAAGAGGGGGAAGCGAATAGGAGAGGGGGTCGAAGTTTGGCACAGTGCAATGTTGGGCAAAGTGGAAA GTCAAATCATGCCAAGATGGTTTGCGGATATGATGCAGCGGTGATGCAGCGTTTGTGGAAATGGGTGTCT GGAAAGCACCCAGCACACAAGTCAAAAACTGTTAAATCTAAAGTGATCACGTGTGTGACTGACCTACTTT TATTGCATGAAACATCTACAATCTCTCTCTCTCTCAAAAAAAGAAACGGCCGAACAAACAACAAACAAAC AAACAAACATAACTCTTGACTCAATTTCATCAGCAGTTTCATTCTCAGTTGGAGAAAGCCATCCTTCGGA AATTCTATATTGCATACAAATTGACAGTGAGCATGCTATATTTTACCAGGAAATACGCCAAAAGAAATAC ACGGTGCTTACTTGTATGTCAATAAACGGATGTTTTTTTTGTACACAAAGTAGGGGAAAAACCTGTTGCA GGTTTTGTTATGGATGCAGTGTTTGCTTTGTTCTCACGCTGGCCAAAGTTTACCATGAAGTTAGTCTGGT ATCAGGTGATTGTGAGAGTATGTTCAGCATGTGTCAGCTTTGAATCGCAGCCCATTAGAGCTGAATCATC TGGCACATGTCTAGACGGCTTATTAATCATAAACTAGATGCAGGTTAGACTGGGTCATTGCCCTGGGGTA GGGGGAGGGGCAGGTCAGAAAAGATTCTTCCACCTCTAGTTTTTGAAAATTGTCAAAATGCAAAAATGTT CATGCACAAGACAACAACATTTTCCCTTCTCTGATCAGCTTTTAAAAAAATGATTGCGTGCAAGACGTGA ATGACACTCATGAGCAGTTGGGTTTTTCCGAAGTTATACAATTTTTTGTGTGAATGACACATTAAAATCG CTTCACGGAGTTGGATAGCAGCTTTATTGTTAATGGGTTTGTGGAAACTCCCAACACCTCACAGCGCTGC AACCCTTGTAGTTGTACTAAATTTAGACACACTGAAGGTTATACTCCATGGGATCTCCCATGTCAGTGGT TTGATATGCCCCATGCAATGTTCTCACAGACATTTCTATAGCTAACAGAAACGTGCCCTTGACTACGGAA ATATTATCTTGCCCCTCCGAAGACAGAAAACTCAAGGTCTGTGTAAATATGTAATTGCAAGTCATGTATG TGTGGGACGGCCTGGACGGCACTTTGTTCTTGAACAGTTGCCAAGTCCAGCCGGATCAGCTGACGATATG AAATTGCCCAGCTGATATCATGTGATTGCAGTGTTGGCATCGCGCCAAACAGGTCAGGCGCGGAGTCTCT GGCTGTGTCTGGGTTTAAGGAACTTTACTACGGCTGGTGATGTGAAGAGGTCAGACAAACTTGACACTGT TGAATTACGCAAATTCCAGGGGGCTGGCGGTGGAATTTTAAACCGAGTGCATTGTCTGCAGACATGTACA GCTGTCTGACACAGGTTTTTACACACTGTAGTCATGGACAGTTGTTGCATGGAAGCAATGTCACTTCACG GCAAAATAACCACGTGTATGAGGCCTGTTTGTCCTCAAGGGAAGATTGTTCATGAAGAAATATTCATAAT TGCAAGAAATATTCATAATTGCATGCGAATAATAAAAAAATTGCATGCGAAAAAAATTAAAAAATAAATA AATTTCAATGTGAAAACAAAACAACCATGATCCGGATTAAACGTAATCTAGGTATCAATTGAAAATTTGG AGAGAAAAAAAAAAAAAAAAAAAATTCAAATTAGCCACACAAAAAAATTGTAAATGAATTAATTTAATAA AAAAGGAATTTAAAGTTAAAAAAAAGACAAAAGCAAGATACAAACTACCCTGAGAAGTGATTCTTTGTTT CGCATGTTGCATGATCTTATGTAATGGAATTTTTTGATGGGAACAGAGGCTAAAAATAGCCGTCTCATAG CATTTTCATTTGTACTGCCAGTTAGTGCGGAGCGATGAAGCGTTACGTTAGATGTGCCGCGCGTGAATAC CCCAGGCATACCTTAAAGAAATTGTGTTTGGGTGGGGGTCAGAGTTCAACCTTCATGTTGAAAGTTATGC ATGAGAAATGTCTCGTGAGTATTCCGTTGGATCACGGATCCTGGAAGCGTGCCAGCTCACTGTATATAAT AACATCATGCAGAGAGCCTCTTTTTATTTTAAAGGTGTTTCTGGACATAGTTAAAGACTAGGTTTCCCAC CGTCATCATGGCATACCTGTTTTCATTGAAAACACTGACTTTCAATTAAATATGAAATAATAACATGTAC ACCTGGGAAAGGAAACAGGGAAAAAAGTCTCCAGTTTTCTTTCGGCAATGAAGAAACTTTTTTTACCCAA CTTAAAAAAAAATGAAAAAAAGAAAAGAAAAAAAAATGAAAAAAAAATGAAAAACAAAAATGAAACTGCC CAAAAAAATATATAAAAAAATCATTATACAGTTTATAACTGACAGTTTCATAAAGGCGATCTAAAAAGTT ATATGTCTGTTTTGTGGCCTAAAAAGTGGCATTTCGGTCAAGTTTTCTACTGTATCATTGTGATTATCTG TGCTGTACAATTTGTCTTTTGTATACAATTTGTGTACTTCGTAGTTAAGCATAGTTGAGTGTAAAAAGCA GATTTAGCATGGGTACAACTCCATGGAAACAGTCCAAATAAAAAAATTAAAAAGCATAAAATATTTATTG ATTTTAACATGAGTAAAACATAAATATGAGAAGTATTTGACATACGTGTATTTTTATACGGAAAGAAGAA AATAAAAGCTTTTTTAACAAAATTGTTTATTTGAATGTATGCGTGTAAGCATTTTCATACTTAAGATACT TAAGTAGTTGATTCCCCCGAACACACCCACAAGTTGATATTATCTGCACCATGAGATGGTCTTCAAACAA AATCCTTAGTTTTCACTTTTGCTTCTCCAAATCCCACTCCAAATTTTTCACTTTTTGCTTCTCCAAAATC CCACTACAAATTTGCATTTTTGTTGCATTCGTTGGGTTGAATTGCAGTACATTGGCTTAATAGCAATTGT ATTTTACTTCGGAAAACTGCAAAGATTTGTCAAACAAAACATTAATTTTTATTAATTGGGGACCGTTACT GAATATTCCTGTGAATGCTTAGCATTTGTAGTCTGAAAAAAAAATGAATGAGTTTTTTGTAAAAAAAAAT TTAATGAAAATGTTACAAACAAATCTTGTGTGATGTCCATGCTTTGATGCAAGTATGTACCCAGCTAAGC CTGCTTAGATGTTTAACGTTAAGATGGTATCATCGTGTCTTTATAAAGTGATGTTCACTTCAGTCCTTGA ATTTTGTACTTTCTTGCTAGAAGTGCCATAACATTGGACTCTGTTATTGTGGTTGGAGGTCTCCCCCACA GGTTTCCCTAGAAGATGAGTTTGTGATAATTTTTGCTTATTTTTCCCCAAAAATTTGAAGCTCACGTATT GTGGGGAAATGACACCTAACATTGAGTTTGTTGAGGCAGTGCATGTAACAAAAACAAACTTCAGAAGCAT CCTTTATTTCGAAACAATACCCTTTTATCTTTTTCTTCAAGCTTTATGCATAGTTGCATCCGTTTTCCTT GTTTTTGAATAATTTATTTATTTGTTCTGAATTTCCTTTTTTGCAAACATCAAAAAGATCTTATTGATTA GAGCCATGAATTTCCTCCATTGAAACCCAATCGGTTCTCTTGTAAAAAAAAATGGTTGGTTACTAAATTT GGTGAAAGCATCACAAAGGGTCGTTCTAAACTTGTCACATTTCTCGAATGTCTTAGGTGTTTCAGACGAA TGTGCAATGTATGTGTGGCATGTTATGAACGTGTTTCGAAGAAAAAAAAGTGTGGAATGTACAAAGGATG TTTATACAGTGTATGGTTAGTCAGTTACTTGCTGTTTGTGTTTTGAATAGTAATTTGCATATAAATTTGC ATATTTATGAATGAGCAGCTGCCTGTTATACCTCAGTCCTCCAATAAGAAATCACTAACTTAATTAATTT GTAATACATTGTATTTAAAAAGCAAACAATGACGTATGTTGTGTACATTGTTATTGATCCCAAAAACACA TATTTGACCAAATATAAATGGAAAGATTTTGTTGTATAGGTAATTACTAAAATTTGTAAAGAAATTTTGT TTAATTTCTCTTAAGAATAAGTCCATTTCTTGCTCTTAAATCCTATTAAAAAAAGCTCTGTGATGTTTAT GTTTTGCTTTCTTTGCAGTTATATACCTCTGCACAAATATTCTCAGATTTTTCCTGTTAACCATTATATC TTGAGCAAGTTATATATATATATTTTTTTTTGTGTTTACTTTGTACATTTTTTGTACAATTTAACCTCTT CAAGCAATTATTTACTGTTGAGAAAGGTTGTATGTAATCATTAGCTTCGAACCAGTTTTGACGTTGACTG AAGAGGTGTCAGTCACAACGAGTTAAGTTTAAGCTGGCCAGACACTGGCTTTTGAAATACGTGTATGCAT TGCTCCCACAAATTCAACTTAGGCCTAACTAGAAAAATCTTTCTATCATTACATTTTCTCCGATGAATCA CTTGAACCTAATTTTTTTTTGCTGTGGCATTTGGTGGGCGACATTAAGATTTGTATGGCACATTCAATGC AGATAATCAATCTATGATTACAGTGCTATAGTTACTAGAAACTGGGGGAAGATTAGGCAATTTTCAATGC AGTAGCAATGTTGTCAATGCAACAGTGTGGTGGCGCCCTCTCGTGATCAAAAACGGGCAGGGTGTTGACC ACCTGGATTGAGTGGAAACAATGCAAATCCCTGTAGTTTTGAAAAGTAAAATGTCTGTAAAAAAATTACT TAATTACTGCTAACCATTATGAGGGCGTAAGGGACATGAGTTGGTGTTTTCTCCCTGGTTTTGTTTCGAG GGACTTGTTGCAAAATAGAGTCAAAATGTCTACCTCACCGTATTAGTAGACATTTGGAACCTGTGAGTTC AGCAATCTCACTTTAATTAGCAATGTAAACATTTTCACATTGAATCTTTTGTCAAAGAGAAAGCATCCAT CTTGGCCTTGCCCTCCTGACTCCTACTGTCTACCCAGATTGTGAATTGCTTAGGAGTGGGACATTACATC AAAGGCACCAGTCTATTTTATGACAAGCCACTTTTTTTTTAGGAAGCGTCCATCTTGGCCTATCTCCTGA CTCCTATATGCACCCAGGTTGTGAATGGCTAAGGAGTCGGCAATTATGTCATAGGCACCAGCCTAGTTTT TGACGAGCTGCTTTTTTGCATAAACCAACGTGGCTTCTCCCAGGTATACATGTGTCTGCAGTGCGACAGC ACTTTCAAAAGCAAGGACGGTAAATATTTTTAACAGGCAGATACGGAAAAGGATTTACACCAATTTGGGA AATCAAATGATGTAGCGCCTTCAGCACCAGTACTGGTGGACAGGTTTAAATTAAATTAATCCACTTACAA ACTGTTTAGTTTGTTTAACGTCCATTGATATTGGTCATTGCTTGATACGTGTAGTCTTGTAACTGTACTT TGTGATAATTATCCCAGCACAGTGGGTAATCATCGTTATGTCTTGGTGAAATAAGAGTTGTATTTTTATT TGTGGCATATGATGCTCCTTATTGTGTCAGATTTGTAAATAGACCATCTATAAAAAAAAAAAACACCAGT TTTTTTATTGCCTATTCTGTATTGTGTCCGTCTTTATAAATATAGTACCCAAGTTTGTGAAGGTTAATCC CGATTTACCATATATTATAAGCTATGGTACTGTAATGGCAAGACTTTGGGGAAAAAATGGATTAACAACC CTTGCGCAAACAGACATGAAGATTAATTAATCCAGTTGTGAAATTTTTCAAATTGTTAACGACTATGTCA CAACATCACATATTTTCTTTTAGTGAAGACCTAAATTACACGACAAAATTTGTTTTCTTGTATTGCCAAA TACAGTACCATGGCTTTTAATACAGGATTTATGTTGTGCAAGTATTCTGATACTTCAAAATAGCCAATTA TAATTTCTCAAATGTATCAAACTTGCATATAATGAGAGGAAATGTCCCCTAAATCTGATGACCTCAATAA AATATATATATATATTCTGTGAACTGTTAATCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds