Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038194246.1 PREDICTED: Patiria miniata neuroligin-3-like (LOC119723541), mRNA ATGAAACCAAGAGATGGCGATGGAACCGAAACAGACACAGAAGGAAGCGTCAGTTTCGCCGGCGACGCGC CCCCGGTGACCGGCAGCGAGGACCCGGCGGGCTCTTGGGACGCCGAGACGTGGAGTGAGGCCGGCAGCTG GAGCCAGCAGGGCTCGGAGGCCGAGGAGCAACCCGCGGACCAGCCCGGAGGTACCGGCGACCAAGAGGGC GGTGACCGCGGCGGTGCCGAGGAACCCATGGGGGACGACACGGGCCCGCCGGTCGATGGCTACCCGGTCA TGGTCTTCATTCACGGCGATGGCTTTAAGGAAGGATCGGGGAGCATGTATGATGGCAGCGTACTCGCCAG TTACGGGGACGTCATTGTTGTCACTTTTAACTACCGTCTCGGAATTTTAGGTTTCCTGAGCACAAATGAC GGGGCGGCAAGAGGAAACTACGGCCTGCTGGACCAGATACTGGTCTTGAAGTGGATCAACCAGAACATCC AGAGTTTTGGTGGAGATCCCCGTCGCGTGACTGTGTTTGGCGTCGGCTCAGGAGCAGCGTGTGCTGGAAT TTTGATGGTGTCAAATATGACTTCAGGTCTTATATCTGGAGTCATAGCGCACAGTGGTTCAGCCATTGCC CCGTGGGCAATCACGAGAGAACCTCGCAAGTTCGCCAAGATGGCGGCCACCGAGATAGGCTGCGAAGCAC CAACCACCTACCAAATAGTGGACTGCTTACGACAGGTCCGAGCCGAGGAGTTCCAGCTCCTGGACGTAGA GGCCCCGCTCTACTACAACGCCTTCGCCCCGACGGTGGACGGCGGCGTGCTCGAGGACCACCCCGCCGTG CTGTTCCAAGAAATCTCCCGCGGCCAGAGGAAGATGAGCTGCGCCGGCTGCTCCTACATGACGGGAGTGA CCAGGAGCGAGGGGTTCATGTACGTCGGCGAGGACGCGGACGGGGCTGGTAAGCTGGACCCCGAGGTCTT CAATCACATCCTGGACGGGTTCGTGCAGAACAACTACGGTAGCAATATGCATGCTGGTAACGTCATCAAG AAGGCAATCTACTACGAGTACATCGACTGGGGCGGCGGAGAGGGCAACCCTTTCACGCTGAGCGAGAGCG CCATTGACATCATCACCGATGACCTCTGGGTGACCCCGGCCATCAGGTCACTCAAGATTGCCGAAGTGAT GGGACTGGACACGTACCTCTACACCTTCGGCCACCGCTCCAAGATGGACGCCCACCCCAGATGGGCAGGA TCTGTTCACCTGTCCGACATGCCGTTTGTCTTTGGTTCCCCGTTGATACCCGGCCCTCTTGGTATCTTCA TGGAGAACTTCACTAAGGGCGACGCTTCGGTCAGCCTGGCCGTCATGACTTACTGGACCAACTTTGCCAA GACAGGGAACCCAAATAGACCAGTGCCCCAGACTCCTAGGAAGATCCACCGGCATTACAAGGTGGCATTC CCGTACGAGACCCTGGATCCCTGGCCTACGTACAACGACGGCTCGCAGCAGTTCATCCACATCGGAATCT CCCCGAGGATCCGAGACTTCTACCGGCTGCACAAGATCTCCTTCTGGGAGGAGCTAGTGCCAGAGATCAG CCGCGCGTTCCCGGCCGACGTGGTGCCGCACTACGTGGCCCCCACCCAGCCCGCACCAACCGGCATGACC ACCATTTCGGATCCCGGCCCACTGACCACTTCAGCGGCGCCCCGGACCACTGACGCTAGCAATGAGATAC CGAACAATGTACCCACCGCATCGGCGGCGGTATCACAGGGTAACGAGATACCGGTGGGCCCTGTAAAACA GGACGAACCGTCCGAGCAGAACTTCAAAGTTGAGCTCAGCGTCGTCATTGCGGTGGGAGGCTTTCTCTTG CTTCTTAACGTCCTCGTCCTAGGAACTATATATTACATGCGGGACCGGCGGAAGCTGGAGACCAAGTTGG CTGCGAAATACCTGGCGCAACAGGAGGAACGGAGGCAGCAGCAGAAGATGTCCGAGGGGGCGGGAAGCCG GCTGGCCGCCGCCAACAACCACGGAACGGCCTCGCCCGCACACCGCGGACTCAATCACAACATGAACAGG AACAGTGTTACCTTCGGCAATGATGGGGTCATTGAGTTCCAAGTATAATCTCTTCCAGCAGTATAATCGC TTCTCGTTCACACCCATCACCCGTTGGAATCCCTTCTGATGGCGGCCAGAGCATACTGCCTGGAACGATG AGTTTCCACCGGTTTTTCTTGGAACCAAGCAAGCTCACCGAATAAGGTTTCATGTCAAAGAGTGCAACCG CAAACCTATTCTCTTACTGGCTTTACCATGCAAACCTTCAATTCATATACCCAGAACGATGCTTATCTAA AACACCTCCATCACCAACACGGACCTATTCAACACTTGGAGGCAGCAAACACGTTTCCATGTTGGTTTTA GCAAACAGAGTTCTGTATCGAGGGGTTCTAAACACCAGTTTTTGTCTCCTGAATTTGCTTCCGGCTCAAG CAAATTCATGATGATAGACCTCTGAATAACCACCTGGAGGTCCAGTTACTAACGCAGTATCCAACAAGGT TTGGAAAATGCCAGCTGTTCAAAATACTCATCAAAATATAATTTGGTGCTGGATAACCACAGAAGGTAAC TTAACAAACTTCATCAAGACCTGTATAAGCCTTAAACTCGGTAAGGGCAGAACGTTTTCGCTTACAAAGT AACGAAGTTCGCTATCATCTCACGATCAGTGTTTGTATTATAATAATGCTAACTGTGCCACGACAATAAT ACATGTGATGTAAAATTTCTCATATTTTGTGATTTAATATTATACCTGTAAGGACTATAATGCGTCGGTA TTGATGCATCATTCTTGGTACAACTTTCCTGTTGATAGGAAAAGGGGTGTGACATCCGATAGTGAATAGG GGCAGAAAGGCGCCGTGCTGGTTTTTTTTTGGGGGGGGGGGATACAGCCAGTCGAAATGTGAAAAACTAC AATTCAATCAAATAAACTGTTATCGTCAAATTTGTAAGTTTAGGATTAAACTTAAAATGTAACGTGTTAC ACTCCCCGTAATTTCGGATTGAACACTCGTTTTAGAGTTTAGTTCAGTAACCAAATGGTCAAATCGAACA ACAAAATTATATCTTGCCCTGAAGCCGTCACAGTCACAGACGTTCCGGCCATTAATGAATACGGTTGGTT GTTATGCATTGTCGTTATGGTTTATGGGGCGTTAACTGTTTTTTTTTTTTAAATAATTTTGTACATAATT GTGTAGATAAGTTGTATGTAATCGCGTATACTAATTAATGTTTTGCATCTCATGGCAAGAAAATTATGTC CTTTTTATACGTGCCGATTGAAATATCTGAAAATGTTTCTATACAAGTTTCACTAAAAATGGTGTACCGT TGTTTGTATATCTTGATAACTACTTTAGTAACTTTCCAATTTATAGTGTATGTGTGTAGTCAGTAGGCCT AGAAGGTAATTATCATAGCCTCTCTTGCCTATAACCGTAACCAACCTAGCAGCAAAATCAAAATTAACTC CGTTCACATCTGTACTTACGTTTAAACACGTGTCCATGCTTGATGCTAAAATATCAGATGGATTGGCATT GCAGACGAGGGCCCCAGTGCTTCATGGTCTGTGGCGAGGATGAAAGGTTAATCTGTACTGAGAGGTTAGT CAGCTATGATGTACTTATAATCCATGCAATCCAAGCTGAAGCTCTCAGAAGCCTTGAGCATCAAAATATC ATTTGATGCTCGTCTGTCATCATCATAATAATCAATATTAGTTTTGCCCTTCACCGACGTATAAACACTG TATATACTCAGTGTGTTACCTCCCGAGTGAAAGCTTGGAAAAAAAATCACCTGCATGGGTGGGACTCGAA CTGTCTCGAACCCATGACCTCCTGCCTGATCTAGTGCAGACGTAGACGTCTTACAACTGACCACCGAGCT TGCAAGATGGGTTGGCTGGTTCGCATCTAGTGTAGCAGCGGGTACCGCAATTTAACCACCTATAGGCTTA TTTATCATCATAATTTTCATCTCCACCATCGCCTTCGTCTTTTATATCACAATATCGCTACCTTGGGCGT ATTTATGAAGCGCACATGTCCATCAGTATTGGTGCTCAGGGCGCTACATCATTACCCCCTGCTGCTTGCA TGGACCCATGAAATATTCCACAGACCATCTCAGTATAGTAGCCTACCTGTCCGATATACAAGCTCGAGGT GCTGGCATTTCGGCGTAAAACAATGAGCTAAAAACTCAGTCATATAGTATAACCATCTGCACGGGTACCC ATTCACTCCTGGCCGGTTGGGGAGAAGAAAGTAGTAACAAAGTGCCTGGCCTGAGGACACACGTATACCA CAACCCCAGGCTGGACTCGAACCCACAACCTGCAGAATACCCCACAGAACTTTTACTAACCTCGAGGCCA CGGCACTTCACCCCCTCCCCATTCATCATCATTCGAACTATCGTCATTATCCTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds