Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038192024.1 PREDICTED: Patiria miniata steroid hormone receptor ERR2-like (LOC119722036), transcript variant X1, mRNA CGTTCGCAGGCTAGGAATAGATTTCGGTGTGCACCACTGATCTCTATATAAAGACTGGACGGTACAAGTA ACACCACGATGTTGGAAGAATTATAAACCGTGGTCAGTGGTGGTGGTCAAAGTATAAATCAGGTGAACCG GGATGCTACAAAAGTGAATCCTACTACCTATACAGACAACGTGTCCTTAACTTCAAGATCACCAGCCGGT CTCTCCAATTTTGGTTTCAGATGAATTCATTGATCCATATCAGCCTTGTATCATGGTAACTACTCAAACA ACAGGGGGCGCTATATTTATTTCAGGACGACAACCGGCGCGGCATGCGCCGACCGTACGTACGTACGTTA GCTTTATAGCTCCATGGCTGTACGTAGGCGTATGTAGGGGCCTATGTTTACAAACCCAAGACGTCTAGAC GTTGAGCAAAATTTAACCCTTAAAACGAAGGAGGTACCGTAGCCAATACGAAACTGATCATGCAGCATTG AATTGAGCACTTCAAAGATGGATACAGAAGCCCAGCTTCCCAACAGTTCAACGACAGCTGCAGAATCAGT CACAAGTAGTCTTGATGAGGATATATCCAGCACTGTCAACAATGAGTGCATGGTCTGCTCAGATAAAGCA ACAGGGTTACACTACTCAGTCAATACCTGCGAAGGCTGTAAAGGATTCTTCAAGCGAACAGTGCAGAAAC AGTTGAAGTACGCATGTCGTGGCATCGGCCATTCGGGCGGATGTCTCATCACAAAGGAAAGCCGCAACAA CTGTCAGCATTGCAGATACAAGAAATGCCTTAGTGTGGGCATGAATGTGACTGCTGTACGAGAGGACAGG GCACCTGGTGGAAGACCACATGCTAAAAAGCTCAAATCAGATCCAACTACACCAGCATTGGAGCCAGAGC CTCAAGCACAAGACCAAGCTACAGAGAGGAGTCATTGCGAGGACATATTGGATGCAGCGTCGTCATCAGA AGAGCAGGACTCCAGACATGATGACATCATGGCTCCTGACAAAAGCAATGATATGATGCAACTACTGGAA GAATTGAAGGCCTCCAGACCAGACATCATACCAGTAGGAGGATCACAAGATGTGGAAGGGCCAGGTGATG AAGCAGTGGGTGAGCAGGCCAGTGATGAAGCGAGTAGTATGATGCAATGTGGCTACAAAGAACTACAACT CATCATCCGATGGGCTAAGAAAGTGCCTGGCTTCACAGACCTTAGCATTGGCGATCAAATGTGTCTTTTG AAAAGCTCCTTTATGGAACTTAATATTCTCCGGCTGGCTTACAGGTCAATGGCTACTTGTCGCAATAAGA TCCTACAGTTTGCTGAAGGGGTGGTGCTGAATGAAGAGGAAACTGTCAAAATGGGATGGGATCTTGAATT GATCAAGTCCACCTGTACCTTTGCAAAGCGCCTGTCTGAGATGAACGTTGATTATTCTGACTTCTGCCTG CTCAATGCGTTGATACTGTCATTTCCCGATGCAGCGGGACTTCAAGACAAAGAGGTAGTGCAACGTCTTC AAGCACGCTTCATGGATTGCTTCTACTTTTATTGCCAGACAAAGCGACCCCAGGATACCAAACACTACGG CCAAATGTTGCTGCGCCTTCAAGCTTTGAGGGCGTTGAGTGCTAAGGCTGCCAACTGCTTCTTTGATATG ATTGACAAGGGAACTTTACCTGTGGATCCGCTAGCTCAGGAAATGTTTGTAGATGGCTTCACGTCACTCT AAATACACGTACAGCTATAATGCCCATTGCCTAGTTTGATTGCATATCGGTCTGTATTATGTAGGAGAGC TTGCTTGTCCTTGGTGGTCATACTGTCGTAAATTGTTATTCTGTATTTGTATAAATGTATATTTTTGAAT AAAGGAACTACTTTGCATGAAGCATTTACATAACAACAAAGATTAGAAAGTATAAAAGGCATTGACGTGA AAGGATATTCATCCTATTAGAAAAAGAAGTGTTATAGTTCTAAAGAACTGCTGTCATAGATCAAGTCAAC CGTGAGCCAATAATGAATTATAATCATGAGCCATTTAAAAACCAATCGTGAGCCAACATTGAGCCTAACG TGGGCATATCATGAGCCAACCATGAGCCAAACATATGCCAATGAGCTAAAAACTACGAGCCAATCATTAA ACTATGAGCCAAACATTGGCCAATCATGAGCTAATTGCTCGAGTGAATCACGAGGCGACCAGGATCCAAT CACGGACTAACCATAAAACTGGGTAAATTGTGGCACGTAATTTGACCACAACTCTGGTTGAGGGGTAGCT AGAGACGCTCTTGGAATCTGCACTATAGTTTCATGACGTGTTACCTTCATATACATGTAGTCACAAAAAA ACTTAGGACATATACACATATTAAAAGTTTCGAGAATTATATAGAGTGAATAAAATAAAAGTAATTCAGA AGTAATTTGGTGGTATGAAAGATAAGGTTTGAAGGTTTACATGGTGAAGTCGGCAATAAGAGTAAGTTTG CAGTAGTGCCATTTGACATAAAATGAATACCTGATTCAAAGAAAGGCTCAAATCCATTAAAGATGTTTTT AAAAATACATGTATACAAACCTTCAGAAATGTATACTGCATGAAAACGCCTGGAATGGCTTTCTAAACAT ACGTCAGGCATGCGGAAGGCTGTCTACATTTTTAAATGAGCTTTTTTGGTTAGGTCCTCTAGGTCCATGG AATCAAGTCTTGTTTTGAAGTACATGTAGTACTGTAAATGACAGAGATAAGAGGCAGTTGCATGAGACGT TAACAATCCGTCTTGTGAAAGGGTCATGAACAGTCATTGTAAAGTGTCATGAATGTCTAAGTTGTAGCTT TGAAGAGGTCTTGAGAAGAGTATGGAGTAGGTATTGCAGGTGAAGGATGCTTAGACTCGACATCGCTTTC GGTGTCCTTGGAGGACTTCAGGTCCTGTGCCATAGAAGCCAACTTTTATACCAGAGGTTTCACTGGCTCA TGTAGTTTCTAGTTTACCTTCGAGAGGCTGGCATTATGGAGTTGAGTTTTCAGTTGTATTGGTTGTTTAG TGTCAAGTGGACATCTATCTCATCCGCTAGGGAGGAAAGGTCTTGTATATTATCCCAAGTAGCTGGTGCA CATCCCGAGTACTTGGAGGGTGCACTATGTTGATGGCAGTACTTGGTGTGTCCATAGCTCTTTGGAGTTA GAGTTGAGAAACTTTACTGGTTTTTCAGTACATTTAATCAGGTCTAGCTTTATAAAAAATATATAAATAT GTTGTTTGGATGAAATTCTGCAAGGGACGTGAATAGATGTGAATGAGGTCAATATACAGATCAGATAGGA AGTTGTGCTGATGAAATATAGACAATGAAGATGTTCCATTGGAGGAAAAGGATGCAGAAGTTATATTTGT ATTTTTGTACTGTTCAGTGCATTTAAAATGAAATAGAAATGTTCAAGTTGTGAAGAAATTAAGAAAATAA GGTTTAGGCCTAAGGCACTAATGAGAAAAGAAAAAAATTAATTATGTGCTGCTGGATGCCTTACAAGGTC AGTTGAAGTAAGAGTGAACTTTTGGAGTTAGTGGGAAGAGGAAAATGCCAGGGTTAAGGCATAAGAAAGA AATGGAATGCAAATAGGTATAATATATTTGTGAATATTGAAAGTTTTCCAAGGCATCCAGTCTGCGACGC TGTAGCAGTACGCCATTAAGGAGGTCCGCTTAAATGATTTCAGGACGCCAAGGCAACAAAATGTACTTGC TCCAATAGTACAAAACTTTTATTTATCAAAAGCTTTACAATATTTCTGGCTTTTGACATCAATCTCAATT TCAGCTCACAAAATTAGTTTCAAGTCAAATTACACTTAAGCTCTTATTTCTAAACTGTAATTCCAAATCC CAAATTCCAAATTATCAAGTCCAATTGCTTAAGTTAAAGGGAATACAATGTATACATCATTTGCTTTTGG TGTATTTTTCAGAAATGGATGGATTTGGGGGGGTTGGTAATATGTAGCAAATATTGTTTCAATGACTGTT TTACGAGTTGGATTCGTAGATGCTATGAAAACCAAGAAAAACAATCATTTTCATGTAGTCTGGTTCCCTG ACTACATTTAAGATGAAACGGAGCAAATTATAGGCACTGGGATATTGTAAGGTCAGGGAACCAGTCTAGC AGGCTTGCACCGGTTCATAGGTGTGTAATCAATTGCAAACAAATGTGGACTAACTTAATATGGTCAATTG TGGCCAGTACTGAAAAAAGCCAGTTTATTCCAACGCTGGTCGGCCGACCAGCGTTGGAAATTGATACGAA AATACCATTTTTCTTGAAAATGTCAGCACACAGGTGCCATGGTTTTACAGGATGCTTAAGACTGTCATTC ACCAACAGGCCAGCAAGGTATTTCAAAATAATTTGGTAGTTTTATTTTTTGATGTTTGCAAATGTTGTAT TTTTCCCTTTAAAGTTCTAATTTCAAAGTTTAAGGTCAAGTTCCAAGTGCTACAAAGTTTCTATAAATTT TAAGTTTATAAAGGTCTAAGTTTATAAAGTGTTTGATTGTGTGGACTCGGCCTCCCAGATTATACCTGAT AAAGTACAGTATTTGAGGCAAAGATCGAAACGCAAGTGTAAAACATACAGCAGCCGACACATAAACCCAA CATGAAACAGTACAAACCTGCATGATTGTGATTCGCACATGAAACCTTTCGGATGAAGACGATACGAAAT TCACCTCAAAATCACTCCTTTTGGTGACATGCTATGAAATAAAACTTCATCCAGTAGTGGCAGGGATAAT AACACAATGAAATGAGAATGTACAGAAACTACAAAGTATGGTCTTCCTAAGTAAAAAGGTTAGTTTTAGA GCACAAATCGAGCTACGATACTCACACTTTGGAGTGCAGACTGAAAAGGAAGATTTCGCGCGTATACCTT GCGCACTGTACCAAAGACTGTACTGACTGACAGCAAGGCGCTTGTAATACATTCATAAAAGAAGTTGGGC GGTGTGCCAATATACGGTGCCTCCTAAAAGTCGTTGCCCTACAATATTAATTAACAAGAGTGACGAATTG TGGAATCAACCATGTACTGAGAAATTCAAAGTATGCTAACGCAGAAAGCCTGAGGCAGGTTACCAGTCCC TACTCACTTGGCAAGGAAGATTTCGGAACTAGTTCAGAGGCGTATGTTCTCCTAAGTTTTGTTTGCACAT TTAGTGGGAAATATTTGGGCATTAGACGAATATAGCTGTGAGGGGGAAAACAAATCAATACTCTTCTGTT GGAATTTGTTAACATATTATTCTTTTTTAATCTCCTCAGTTCTTGATATGTTTTTTTTGGTGCTCCTTAT GTTTGTTGTCAATGATATGATTTGTTGGAGTTTAGCTATAAATAAGTGCAGGCCTTAATGTGCCACGTCG TAGCAGTCATGAATTGCTTCATTATTCAATTCTTATTGATTATCACCAGCTTCAGTAAAGATTGAAAAAA AATGTGATCCAAAATAATGTCAATCTCAAACGTGTCTTCAGGTATCTGCTTCGACAAGTTAATAGTAAGC AGTGATGAAAGTATAGTTACCAATGACACAATTAATGTTTGACAGATGTAAACAGCAAGAAAGCATACGG GTTACGTACAGGTAACTAATGTGCGGTGTAGTATTTATGTGATATGTTATTTTACAAACGAAGATAGCTA GCTGTACCAATAACTGTTGGGGGAAACAGACCAATGAAATGCGGTTTCTGAAACGTGGTACAATCATTGT TATTCATTCTTTGAACAACTTTACATATATAGTATAGTAAAGGTAATACCATGATATCTTTATCACTGAA GTTATTACGTGAGCACAAATGATAAATACAGTCTTTAGTGTTATTTGTAACCATGCTTGGTCAATATGAA TTAATAGATGTATAAAACATGTTTTAAAGGTGTATGTAATTATGTCAAATTGATTGGTTTCAAGTATATG TTGCATGTAACGAGGTACGATGCATTGATGTGTTAATGTTATAATATTATATTTAAAGAGTAAGATACCA TTTTATTGGAAACGTTTACCATTGATATTTTAAATGTATTGTGCCTTCAAAAAGAAAAGGGATATTTTTC ATTTTTATGGATTACACAGTGGAAGAGTATTAGCCTAGTAGAAGGTTTGTATTACGAAAAGTTCAATCTA TATGGAGCAGGTCTATGCGTATCGTTCTGAGAAAGACTTGTTGCAACATGCACTTCGCAGATGCGGCCCA TCTCTAAGCACAAAACTACATCTTAAGATTGTGTCTGAACTACTTTGCTACATCAAGCAACAACTGATGC AACCGTGTAAAAGCGACTATAGTATAAGGCCATTTCATGTAGATGCATAAAGGTGTCATATTGAATTTGC ATTAAATCTGGCCTCTTTACCGTGTAATCATGTTCACTATAAGGCACGCGCAATACAACCAATGAGTCAA TATTTCATGGAAATTCACACATATCGGTCTTTTGTAATTAATTAATAATAATTTTCATTGTGCGTTATCT GTTGAAATAATTGTGCATACGCCCCAGGTAAAGTGATTAAATGGACTACGCGTCCAAACACGCTTGTGCA AATTACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds