Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189364.1 PREDICTED: Patiria miniata serine/threonine-protein kinase 11-interacting protein-like (LOC119719896), transcript variant X2, mRNA TTGACATGCAGGATAAAAATAGCATGAAGGTTCGTTCTGGATGGCGGCCTGACAAACGTAAATAGAGTCA CATCATGGATGCGCTGCATTGAAATCCGATCACAGTAAAAGACCAGCTCTTGTTTCCAGTACTTCCAGAA AGGCAATCATGCAGGCAACAAATAGCCTTCAGGAACTGACAGTTTTCTTACAGAAAAACAGTGGTAAGAT CTTGAATGGCCGCTGCAACCTTGCCCTGACCTCACACACCTTGGCCCACCTTAACCGCAGCTTCAGACAG TGCGAGGAGGAATCATCGGTGGACAGTGGATCACATGACCAGCACCAATCACATGACAGGAGATGGCCAC AGACGGTCATGTTCCTCCTGAACTATGTGAAGAAGACGCCTGCCCTTAAGCTGATCCATCCTACCAGTAC TTTGCAAGGCCAAGTAGAGATCTCTAGATTCATTGGCCTGACAATGCTGGAGATTAAGAAGGTCCCCGTG CATATGCTGAATGGGCTAGGATGCCTACGCCATCAGCTACAGGTCCTCATCTGTTCACGCTGTGTGCAGT CACTTCAGTTACTCCTGTGTTCGTGTGGAGGTGACATGGTATCAGAAGCCCCGTGGTCATCCCTTCATAC CCTCAATCTCAGCTATAACTACATTGACCATCTCGACAATTCACTGAGATTGCTCCCTGTTCTGAAGATG TTGGACCTCAGCCACAACGAGCTCAAACACACCAGAGATTATCTGGAGTGCCTGAGCGAGTTGGCCCATT TGAATCTGGGCTACAACCACCTGGAGCGAGTGCCTACCCTCGGTCTGGTGGCCAGGACAAACCTTCAGAC CCTGGTCCTCAGAAACAACAGTCTAGATAACCTGTCTGGCTTAGAGGACTACAGCAGCCTCTTGGAACTA GACCTGTGCAACAACTGCCTGTACGACGGAGCAGAACTGAGAACCCTAGGATACCTGCACAATCTGAGAG AGGTCAATCTCCTTGGCAACCCGTTGGCCTTTGACCCTGCTTACAGGTCAGTAGTTATCAGCAAGTTCCC TCCAGAGGGCGCCACACGCAAGATGTATCTAGATGGTGTTCCTCTTACTAGCACAGAAAACCAGCAGATA CCCAGAGTCGGCCTGACCAAGCCCGTCTTGCGCGTCCCCTCCGAGGCTTCCTTTGACACCAGCTCCACCT TCTTAAACGATCACTCCAGCTTTGACGAATCGACGGACCTGGACAAGGGCAAGAGGTCAAAGGGCAAGCG GGCACCAAAGGTCCGACAGGTGTCCATCCCCGACCAAGGGGTGCACAAGGACGATGCCAAATCCAAAGCG TCCGTGCTTCGGCATTCAGACATCGAGAAAACCAAACGGGAGCATGAGAAGATGCGTCAGCTGCATGGTG CCGACTGGCTGCTGGCGTTACAGGCACCGTACCGCCAGTCAGGAGCAGACACCAGCGAATCGGAGACTGA AAAGATAGTAGAACGAACGCGTGATGAACCCAAGGCTAACCGCGACAACTCGCTGGGTCCATGCAGCAGC GGTATCGAAAGCGATATCGACAGCACCATTAACGGCAATATCATAGTGCATGCCAGCGCCGACGGCAGCA GGCATGTCGATAATATCGATAATACCAAAAACGACAATCAAGGCATTATGGAAGAGATCTCTGCGGTGCC GTCTTCTGATGTTTTTCTGCCTGAGGTGAAGGCTGATCTGAAGCGTGTGAGCACAGGGCAGACACATGTT CTCTTGGAGCAGAAAAATTCCAAGCCATCAATATTTCTGGAGAGGATAGCGTCAGATTCGGATGCTGCTT TCGAGAGTCCCTGGATAGAAGGGACACCTGAAGAGGAGGAGCATGAGCTGTGCAGTCCTCTCCTAGTCAC CGTACAAGAGTCCAACCAGGACGACCCTGTGCATCTCTTCTTAACTGTCAGAGAGACCCACCTGGAGGAG AAAAACTTGAACGGTCACGTGACGGAGAGACTAGAGATCAAATGCCTCAAGGGCATGCAGGAGAGTATTG AGCCCGTCTGGAATGAGGAGGCAGGGGTCAACGACCTCTTGCCGGTCATTAACCTGACGTTTGATTACAT GAGGAGAGATCGCAAGAAACGAGAGTACATTCTAGAGGATCAGGAAAGTTTTCGGATATTAAGCAAGACC CTTCGGCCATTTCTGGAGGAGAACCGTCTAGCAGCCACCACTCATCAGAAGGCCATGTTCCAATGCCTCA AGTGCTCCACAGAGTTTGCAGGGCATCAGGCTAAGAGAAAACTCCCCGCCCAACAGGGTACCATCCGAGG CAATTACAACTCGGAAGGGGAGGGCAATGGTGTGTGTCCTTTCTGCGATAGTGAATTAATTGTGGAACTC GAGAACCCTGCCTCACCAAGCAACCATACATCTATTGTAAGCACGCCCACAGGGTCCCTTAACTCGCTGG AAATGAACCTCAGACCCATGGCATCTTCTTCGCCATGGAAAGTCAAGGATAAGGATTCTGTATTACTGTC ATCAACTGAGAAAAGCCGGAGCGGTTCGTCCACCGAGTACCACAGCGCTGCCAACTCCCTCTCCTCCAGC CCAGGACAAGGGATGACATTTGGGCAGGCCATCAGCTCGTCGTCTTCAGGCACCTCCACGTTGGTCAATA GCTCCAGTTTGATTGCTACGTCCACGATAAAGCGGGAGAGGCACATCACCGAGGAATCGATTGAGGACAA CGGGAGTGCGATGTCGGCTACCTCGGATCAGGACACGGCTCAGGAGAGCAACTTTGCCCTGCCCGACCCG ACCATCAGAATGAGCCGGGGAGATGAGACCAACCCTTTAGAGAACATCTCCACTTACCAGCATGAGAAGC TGCGGGAGCTGCTCCAGGAGAACATGGCTCCATTCAGCCAGAAGTATTCCCTGGTGCCTCCTGACATCCT GGATGGGGTGAGTAGCAGGGAAGTCTCAGGGGCCACTACGCCTAGGTCTGGAGAGACGTCCAACCCACCA TCAAGAAATGAGATCGACAACGCTGTGAATTCACCTGCAGAAAGAATTGACAATGACAAAACTAGTCAGC CCCAAGAAGACCGTATGAGGACTAAGTCCAAGAGCAATTCTTCTACAACACTGAAGCAACACAGAAATGA CACTCCAGATAAAATTCAAAATCGTGGCAGTAGACCCTGTAGTGAGGACGATATCGTCATCTTGCCAGCA GAGAAATCCAACCACGAGAGACTGGAGGTGAGTTTCAACGGCTCTAATGACAGCACCCAGGATACCCCTT CCTACGACACGGTTTCAGGCGTCGGACGTGCGGGCAGCACCGACAGCGAAATAGCTGTCCTCCGAAACAA CAGCATCGATGCTGTCAGTATCAACTCGGACTCGGTCTTTGACACCAGTCTAAACGCGGCGCCAACTAAT CTTGCCAATGCTCTAAGTGATGCCGCCAGCAAGCCAGATGCAACGAACTCGTCACTGACACCAACCATTG ATGAGCCCCATGCTGAAATCGAAACCTCAGGAGTGCCTTCAAGAGATGTCGGGGAGAAGACTAAGCATGA AAATCTTGACAGGAATGGTAGGAAGTCCCCAACCAACAAGCCATCCAGTCAGAAGACATCGCCGAGCAAA GAGAGCTCTTTGAACTCATCGTTAGAGGCCAGCGTCAGTCTGAGCATGCCCAGAAAGCACTCCATGTTGG AAGCAATAGACAGTGATTTCACCAACGTGGACCATCGGCTCAAGCTGTACTTCTCCATGTCATTGTTCAG CGGCAAGGAAGAACTTGCTTGCATGATAAAGTGTGGCATATTCCAGTTCAGCAAGTCAGCAAACTTCTCA GGTCTTTTAGTCGTCTCGACTCAAAACATCTACATCATGAGGATCAGCAGGGAGGAAAGTGAGAAGCCCT CTGATTGGCTGGCCAAGAGATCCCAGCATTCCGTCCGAGACCTCCTCCACATCCACGTGGGTCCCGGCAG CCAGAGTTTCCAGCTAGACTTCAACAACGAGGGCATCCTGTACACCATCGTCCTGCGGGATGAGGAGATG TGCGAGGCGTTTGTGTCACAGTTGGAAAAGGCCATCCAGCGAGCCCCGATCGGCAAGAAGCGACGCTTCA AGGGCGTGGCCAGGGACCACCCCAACACCCTGATGAACATCATGAGCCAGGTCTTTGGCGAGTCCATGGA CGAGGGGGTATTGGAGAGGGAAAGTGAGATCAGCCTGTACATGCTGGCCTACCAAAAGACCACCAAGAGT GTCAAGCGAGGTTTACTACGTCTGGATCGGAAAATCTCAAGCAGTGCCCCAAAAACGATGGCCCTTGACC TCGTGCCAGTCAGTATCGTGGTGACCCCATCTGACCTCTACCTGGCTGAGGAGAACCACTGGTGGCCGCT GAGACAGACCAAGACCAAAGGCCAAACAAAGCTGCCGCAGTTCACGCTAAAGGACCACCACACAATCACC GATGTTGGCGAAGTGGAGCTGTATGAAGATTCACCGTCAGATATATCCATTACGTTTTTCCACGAAGACA CCGCAGACCAGTCTCACTGGCACATTTCCACTGAGAACACCTCCTCCTTGTCCCGCCTCCTGGACGCCAT ACAGACTCCTTGGAAGGACATGTTTGGGGTGGATCTCAAGCAGACAGTTCATCCTACATTGACAGTTGAG GAAGAGTTTCTGGACTGACACCAGTATTGTTCGGTCTGTGCAATAGTGGAAGAGTGTAATTTCTCCAGGA CTCAGCTGCCCATTCAAAATGCCAACAATTGGAGGGCAATTGTGAAGTTTAGTACAACTCGTCTGTCCAG TATTACATGTGCAACCTCAGGCAATCTTCTCTTAATTGTATTGACCCACCTTTTTTGGGGGGGGGGGAGA AAATGTGATTTTCATACCTGATTTTCCAGTAGTGAGCATGTGATTCAATACTCCATGTAATTTCCCTCAA AAATCAAACCCTGCCCTCTTTCCACAAAATTTATCCTGCCGATATTCAACATTGTGTCATGGTCATCTAC TTTACAGGGGAGTCCAAAAGGTTCAAAGTGGATTTTCATGCTTATATAGGAATGGGATCCTAAACTTCAC AGTTCCCAACTGGAGGAGTTGTTGCCAGTTGAACAGTGCAAATTTGCTCTTTTTTTTTTTTGTATGAGGG GTGGAGTGGTAGCCATTGTGGACAGACTAGGCCTCTGTAGGATGTTGAAGTGCATGGGTCTTAAAACAAA ACCTGTATGTTATCACCAGCATTACATTGAGTTTCAGGTTCATAGGATGTGAAAGGCACAAGTTGACCAG TAATGGTTGTCCATAAACGTTGCGCATGTGCTGAGGAGAAAACACACAGGCTGCCTGTAAGCATTAAATC AGAAGAAAGTTTGCACGAGAAAAAATCAACTGCAAAGTTTATTTCATGTTTTATGCAGCATGGCCTGTGA ATATTCAGATGCAAAACAAGTTTTTTTTATATATATAAATAAATATGTAAAACTGGCCAACATTTGGTTT GAATTATGATGTTTTATTATTAGATTCAACGAAATGTAACCCTGCACTTAATAAGGCTTGAAAAAGCCTG TCTTGTTGGGACTTTTCTATCACAAGTTTTACATTTTTGACAAGGAAGATTTATCAAGGTACACTGTAAA GTATGACAATTAGTTAAGTCTTGTGAAGTATACATTTATAACGAAAGAAATGCATATACCCCATATAATT GTATGTGAAATAAAAACAAATACAAGAGCATGTATTTCTTCAATGCATAAACTTTATACAAAAAGTAAAT ACAATTAAAGAACCTTCCTAAATCTAACAATAAAATGTAAATTTGTAAGATGAAATTTGTAAAATAAATG AAATGAGTTGATGAAAAGGGTAGTATATTTGCTAACGTACACAGATACTTAAATTACTATAAAGTAAAAC AGATACATAGACCAATACTTTGAAATAATGTTTGTTTGCAGTGAACGTCGTTTCATGTGTTATTCATAAC GTCTGCTTTTTGGAAATTCACGAAAGTTATCTTGTAATTTATATATCTTGAGAATGTTTTCTTTGCTGGA AAAAGCAACGAAAGTAGCAGAACTCCTAATTTAGAACTCTTGGATTGTATGATTCCATTGAAAACAATGT TATTGCAAAATATAATTCAAACATTTTTAACAAGTTAACGAAACGGCCATGACTTTTTACTGTTCTTTGT AAAAAGACATTAGTTGTGAGTTATTTCCCTATTAATTTGGGAAGTGTGTAAGATTCACTTTATTTAACAA GACAATGCAAAATGTTGTAAAAGTGGTTACAAAACAGTAACTATTGGACCATGCGCTTTAAAACAATCTA CATCAGTTCATAAAGTACAAACGTAACTTGAACACGTGGATTTGGATGATGTAGGAAGAACAGGTTTATT ATTGAAATTGTGATAACCTACTCCATTTATATGCCTATATTTTGTCAGAAATATTTGACCTTTTCTTTGA ATTTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds