Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976623.1 PREDICTED: Strongylocentrotus purpuratus focadhesin (LOC583248), transcript variant X3, mRNA CGCAAAAAAAAGAAGTTTTTTTGTAAATAATTCTATAGACCATTTTTTACCAGTTGAACTTATGTGGTCG CCAGATTCAAGGAGCGAAATAGTCAACTGTGACTGATTGCCAAGCAAAAACAAATCAAGAAGAAGAAGAA GAAGAGAAACAGTAGACCTAGATCTATAACGACCTTTTGAATCACGAAGATTCTTATCAGGAAGGATGGA GGAGTTAACGCAGAAGTTGAACTTTGACGCGATAGGAATTCAGTGTCAGACGGTGAAGAGAATCTGTCAG TCTATCAAAGAAAGGAGAGCACACCTGATCGGTGATGAACCTATTTCTGCTGCAACTCGTAAAATCGAAA AATTAGAGCTGCTGTGGTCGAAGTGCAGGGATGGTTCACCTCGCCAGAGCTCCCTGTGCTCCCATGCCCT GATCGAACTCTGGGAAGATGGCGTCCTACAGCAGGACTACATCCTTCAGGAGTTTATCAACCTCGTACCC ACGGCCAGGACCGTGAAGCCATGCGTGGATGCAGTGGGTAAACTGCTCCTTATGTTGGTGAAGAAGTCTC TGTTTGGAGTGATGGGTAGTGGGGATGAGGTTGTGCCAGAAAATCGCTGCTATTTCTACATGAGGACTCG TCCGCATCCTTTCATATCCATGTACAAGAGTAGACCAGATTGCTGGTCCTCTATTCTGGAAACCGTCTCC TCTTTGCTCTCTCAAGACAACGATCGCTTGCAAACAGAAGTCCTTCACATCTTGAAGTCGTTTATCAAGT ATGCATTGCTGGACCCTCTCATTGATCCTAAACAGGGATCTCTTAGGGTTCTACTTGCAGAAAGTCTTGC CCAAGCATGCCGGCCTAGATTGATACCTCAGAGTAGCCCTCAAGCTAAAGAAGTATTGCCACTGTTCCTC GGCGAGGTGGTAAAGTTTTTGTTGGAATGCATGCCATGCCTGCCGACATCTACATGCGATGCAGTCACCG AAGCGGCACACCTAGCAACCGTAACCATGGACATCATCTCCGGTTACGCTCCATCTATTGATGTGAATCT GGTGGGACAGTCGATCTATTACTGTCTCTCACTGGGCCATCAACTGGAGGAGCTAGGGATGGATATGTCC CCGGTCTTACGCCTCCTGGCAGGGATGAATCCAGGGCATATGAAGTTCCAGGATGTTGCAATCATCGCGA TGATAGCAAACCTGTTGTTGATTGGCTCCATTCAAGAACAGAATTTCATACTGCAATTTGCCCTGAAGTT CTTTGGATCCCCTGCCGGCCCCACCCGGTCCAGGACCAAGAAGCTGCTGGTATGGTCCCTGATCCAGGTC CTGGATCACTTGCTGGGCCGTTCCACCATAGAGCTGAAGTCTCTGGAGGTCTATGTGAGAAAGGAGAACC GTGAGATGGGGCTCAAACTCTTTCATGATATCACGGCTAACCGACCGTCTCCCTTGGTAGAAGGAAGTGG TGATGTACCTGATAAGATTGTCCATTTTCATGGAGTCCACCCGTGGCACAACACAATGTCTGTTTTCCAA GAGACGGCGGTCACCGTCTTAAGCAACGTGAACACAGCCCAAAATTGGCTCTGTTGTCAGAAAGCCAAGG TGCATGCTGGGATTGGCGATACAGACATGGAAGAGACGATACAGTTAACCGTAGCCATCCTGTTCTCTTT TGGTCACCAGCTGGCCCATCTCTGTATTGATGTGCTGGTCGACGTTGGCAATGTAGCTCCTGCAAAGGCT TACAGCATGGTGCCTCTTTTCATGTATACCCTAAGAAAGATCAGAGTGCCTGCAATGAGCACATACCTGA TCAAAGCCCTGCCGAGGCTTGTGGGTCATCGCTACCTCATTAGTCCTGTCTTTAAGCTTGTCCTGAATAG TAATCTGGATGCCATGTCACTCAAACTAGTTACAGACCTCTGGAAAAAACAGGATCGGATATTTCCTGAG CTGCAGATGAAACTAGCTGAATGTGAGAAAAGCATCGGTCATCTGAACCCACACACAGGGCTAGATGACA TGCTCTTAGAGATTGCAATCTGTGTTTGTGAAGTCTGCACCCACAGACCAGTGCAGCACGGTGCGGACAT GGTGCGGACCCTATCGATGGTCTTGAAGAAAGCCACCGGACCTCGGGGAGTCCCTGCTACCTGTTATGCC TTGGACGCCCTGATATCTATCACCAAGGCAGAAGATGTGGTTGACATCATAACAGCGTACAAGGGTCTAG CAGGGCAGTTTCAAGCGGAGGAGAGGCCTATGGTTATAGCCAAGTGGTGTGAATTTCTTGGACTGGTCCC AGAATTGCATGTGGATTCCAAGAAATATGAGGGATTTACAAGGGCAGTTATTAATCAACTATGGCTTTAT ACAGCGCATCCAGACCACAGAGTTGTTTCAGAATCTCTATCAGCCCTAGCAGCATTCAAGATATGTTCTT TCGAAATCCGTCATCTTCCGAGAGAGGCCACAAAGGATGTCCAGACGAAGCGGGCCCAAGATCGGAAGAG GAGGGCTGATGCGAGAACATCAAGAGGTGAAGAAGAAGAAGAAGATGAGGAGGAAGAGGAAGAAGACCTT TCTATACCTGGGAGCTGTTTCATTAATCTACTACCTTGTGTGAACCAGGAGGCAACTTCAGGCAAGGGGG AACTTCTTCATTCCTTCCTCTGTGACGAGCTGGTAGAACTCCCTCGCAGGTATTACTCCCAGACCTCCCC TAGACAGGCAGCTACCGAGAGCAATGTAAGCAAGCAGGTCTCTGGCATCCCCTCTGTCATCTCTCTGAAG AACCTGAACAACAAGCAGCCTGGACATAGACCTTCATATGCAGCTGGTTTGCTGTTCAGCTTCAAGCCCG GAAGTAAGAGCAGCAGAGATCCAAAGAAAGCAAGGAAGAATAAGACTGCCTTGAGCCAAGTTTGTTTGGA TGAGCTCACCTTATTGCTCAATGAGGTCCCCGTTTCATCACCAGACTGGTTTTACATCATGCAGCTACCC AGTGCATGGGCTTCATTCATGTCTACGGCATTACAAGCTGTCATTGAGGGAAGACGTTCAGAGGTAGAGC ATGAAGCATGTCGAGGTAGAGATGGTCCTGATGAAGAAAAGCAAAAGGAAGGCTTGGCATCGGCTTGGCT GTGGGCTCGGGATAGACTGACAGAGCAGCTGAGGACGACTGTCTTGAAGAACTCTGGTGCAAGGGGCAAT GCGATTCTGGCCTTGGGTGGCTTGGCACATGCTGTGAGTGCTTACGTTGTACAACTGGGAGAAGAAGCTA CTTTAAGCCAGAGGTCAGCCTCCCAGTACGAAGGTCATAAGTCATGGATTACCAGGGTCGTGGACTCTTT TCAAGTTGCCATGGATTCAATACATACTGCTCAGTCAGTGTTCAAATTCTGCCAACATCATTCTCGGGAC CACTCCCAGGCCACCGGTGAGCAGGTTCATTCCTGCGCTGCCCTCGCTCTTCCACTGCTTGCCAGTCACA TCATGACCATGCCTACCAATGCCATCTCCCAAGTGATTGACAGGATGATGTCATTAAGCTCCGCCCAGCC CTCATCAGTGCCCATACACCATGGCCTTGGTGTGGGCATGCTACTGGCTAGGCTGTGCGTAGAGCACTTC ACAGACATGACAGGAACAGAGGGTGACAATGTCCTTTCCCGATACTTCGACAAGCTGGAGAACACCGTCT TGACTCAGAATAATAACCCACAGGGACATGTGATCGGCTGTACGCTGGGTTTGGGTGTCGCCCTCTCTGG TCTAACGCATGAGAGTACTACCCATGCAAAGGTTCATGTGTTGAAGGTCAGAGGGGATTTACTGAGCAAG ATTGAAAGCCTCGGAAACTCTGCCAGTTGTCTGACCGAGGCACAAGTGTTGTGTGTTGCCTTGGTTACTG CTGCATGTTATCAGGTCAACTACATCACCTCCCAGGAGGCGTTGCACACTGCCAAAATGCTACAGACCAT GGCCCAGAATAACCTCAAGTGTATTCCATTAGCAGTGGGTACTGGTCTACTGATGCACAGTCTTACGAGG ATAGGTCATCAGGAAGTGATCCCTCTCTACAACAATCAGCAAGCAGAGCTCCTCAGACTTCTCACTGACA AGGATAGCAGCATAGACCTGATAAAGTCATCAGTAGCTGGACTAGTAGCCCTCTTGGTCGGGCCGGGTCA TCTAGTCCAGAGTGAACGTAGACCAGGACCTGAACATCGAGGTCTCAGCTCTGCAGTCAAGATGCTATGT CAGCTTTTGTCAGACACATCCGACTTGAGGCTACAGCATTCGTTGCCATGGTTACTTGGTTATCTATACA TGGGATCCACCGATGTGACAGAGGCAAGATCGTCAGTTCCATCCAACTACAACAACCTGGAGGAGAGCAG CCTGTTGAGGGCAGCAGTCGACATGCTGATAGCTGCAGGAAGGCTTGGTAGCGAGGTGGTCCCTTCTCGG CATGTACTCACTGTACTGAAAGTACTACATGAATGCTCCGAGAGCTGCAAGAAGGCGTTACCACCAGTCA ATTGGGCTGTGGTCCTCAACCCTATCATGAGGAACAATAGCTATGCAAATGGTGCCATATACTATGAGTG TATGAAGCTGGCAGTAGGACAGTGTGCTGTTGTGAGGTCAGCAGCGTTACAGAGCAATGCAAGCTTTGTA GCATCCTGGCTCTCTCCGTCTGTCTACCTTACCATCAAGGAAAGTTGTGAGAAACATCTCTTCCAATCTC TGCACATCCTTGTGGGCTGTATACCCCTTGAAATCCTAAAAGCCTTCCTCAGCGGCCAACTGGTCGGCTT GTTTCAGCATTCCAACACGCACTTCACCCATTGTATTACAGCATTACATGGCCTGAATTTAGCCGCTCAG GTTCCGGACCCAGCTCATGGAGTTGTCAATTTGCTGAACGAGACTGCACGGAAGATTTTTGCGAGCTTGC CATTTGACAAGGAGTACGATTGCCTGCTCCATGCCCATTTTGCTGAATTCATTAAATATCTACCTATGGA GTTCTTGGAGGAAGTCACTCAGATGAAGGACCATCTACTGAAACCAAGCTTTATACGTGGATACTTGGTC AAACAGGGTTTACAACCAGTGCAATGGTTGAAAGACTGCGTAGACGAGGCGATGAATGTTGGCAGCGAGT CTGACCAGTCAGTCATCCTGTGGTTCTTGATGATAGCCCTCGGACAGACGCCCTCTCAGCTCCCTGTCCA GGAGAGGGAGATGTGGCTCCAGCAACTCATGAATCACTTGAAAACCATTGCTTTTGGCAGAGAGTCAACA CCATCTAGCAGTACACGAGAACCTCATCAGAGAATCAACTTCCTTCTAGAAGTGTTTGCCATCTCCATTG TGACCTGGTCTTCTCCTGAGTTCACCCACATCTGTGGTCCCCACCCCCATCACTATGTCTATGGAACCTC CCAGGGAACTGGCCAATTAGCTGCAGGTATTGAAGGAGGAGAGGAGGAACTGTCTTCCACAGAGTCTTGT GAGAGCACCCCTGATTGGCTGCAGCAAGTCAATGAGAATAGTCCACTTGGATGTGGGGAGTATGGGAGGC AGACTGTGCAGAGGGTGAAAGGATTTCTACCTGGCGCTCTGTGTAGACTGGTTAGCAAGGCCCCCTGGGA TGGCATGAGAGGCAAGATCATCGAGTGGTTGATCAACATGAGTATAGACAGCAAGAATGAGCTGGTTACA GAGCCAATGAGAAGAGAGCTGAAAGGTTGCCTGTATGCATTACGTCACTATAATGAATTCAGAGCTAACT CACAGTGGATGAAGATTTTCGACAAGTGATGATGATGCTGATGATGATGGTGGCCTGCTTGTCTAGTGCC GATGTCTTTCGGTCACTTGATGGAAGTCTGCAAGCACAGGCTCTAGACACTTCAGCATCATCTACAATAT CTTGAAGGATTGCTATTCTGCAAGTACAGACCCTACTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds