Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT099523.1 TSA: Strongylocentrotus purpuratus WHL22.477866.0 mRNA sequence GAATAACCCTGGATGAAGAATTGGACTATATACCAGCACGGTATATAAAACAAAATCATGAGGTATCTTA TTTTATTAGTTTCATGCTTGTGAGCGGTTTGGGAAAGATCCATTTTAGCTTTCCATACTCTTCAGTCGAT CATGACAACATCATTGGCCGCATAATAAAAACACAAATCACCGTGAAAATTGAAACACACGAACCGAAGC ATCAGTTTGGAAAGGGCTCATGAATCTGGACTTGATCATGACACTGTCAATGTGAATGCTTGGTGCGATA CTGAATCATCGTAGGGAGATATTACCTCGAATTTGACATTACTACAAATTTGGATTACAAAGGATAGGAA TTCTACTCTGACGGTGTTAATAACTGACTGATTAATTATGCCAGTGAATAAAGGGAAACCTACCCCCGAT GGAGGGAGTCGAGACGCCAAACCCGGGGCGCTAGGCGCCGGTGCAGGCGGGATGAAGGTGTCTCATATTG CCGAATTTGAATCTCTGTTCACAATTGAAAAGGAACTTGGCAAGGGAGCTACTTCAGTTGTGCATAAATG TTTTGAAAAAGGAACAAATAGACCATTTGCAGTCAAGAAAGTCAAGAAAACTGCTGACATGAAAGTCTTC ACAACGGAAGTCAGTGTATTGCAGAGTATAAACCATCCGCACATTATCAAGCTAGTCAACCTGTACGAGG ATGACTTCAACGTCTACCTTCAACTAGAGCTGGTGACAGGTGGTGAACTCTTTGAGAGGATCGTGGAGCG AGGTTACTACAGCGAGAGGGACGCAGCCAGGTGTGTCAGGGAGATCTGCCAAGCCGTTTCATATCTACAT GATCATGACATCGTGCACAGAGATCTGAAGCCAGAGAACCTCCTGTACGCCGATATGGGCGACGAAGCAC CCCTCAAACTGGCCGACTTTGGCCTTTCAAAGATCATCGACCAAGATGTTTCGATGAAGACCGTTTGTGG AACACCTGGTTACTGTGCACCGGAGGTTCTGTGTGGGAAGCCATACTGCAAGGCAGTGGACATGTGGAGT GTAGGAGTGATCACCTACATCCTCCTGTGTGGCTTCGAACCATTCTACGATGACAGAGGAGATAACTACA TCTACAAGAAGATCATCAGAGCTGACTACGCCTTCATCTCACCGTGGTGGGACGATATCTCTGATAGCGC CAAGGATTTCATCGACAGACTTCTGGTGACGGACCCCAAGAAGAGACTATGCGCAGAGGGCGCCCTTCAT CACCCATGGGTCAGGGAGGAGAACAGCGCAGCCAGTACCAAGAACATACCATGCACAACCATTGAGAACA TCAAGGAATTCAATGCCAAGAGAAAACTGAAGGCTGTAGCAGCAGCAGTGATTGCAATGCAGCGCCTAGG AGCCATGGGTGAGATCATCCCCGCCTTCGCCGCCGCCTCCGGAGGCTCCGAAGCAACCACCATGAAAGGA GCTGTTATGGCGGCCGCAGCGACAGCCTCGGCAGCAGAATAGAGGGCACCAGACCCTTCCACGAGATGAG AGTCCCCTTCCTTATCCGTGTGTGTTACAGCTTCAGAAACGTTGAGTCAAACCTGTATACAAAGATCGTT CAAGGTGAACAAGAAAAGCTGTCTTTTAAGCCCCACTGCACAACTTATAACTACTTGGGCCCTCTATATT GCAAAGAATGCCTAATCGGTGCCTGTTGGTCCCCCATGATCCTCTTTTTTTATGTTAATTGAGAGCTGAT TTGATGAGATAACCACCTGTCGGTGACCTTGCAGGGAGGTCTTATCCCCCTGGCCAAACTAGTGCAGATG GGCTTTAAGGTAAACATAGGTTCCCTTTTAAAAAGGTTTCAGTTAGAATCACTGTTCAAGGAAACAAATT TACTTTTTATTGACAGGTTTTATTTGTCATACAGCTCCACTTTAAAACCAGTTTCATTGGTAAACACTGC TCAATGTAAACACTAAATGTGGTCTTTATAGACAGATGTTTTTATATACAGGTTCACTTATACTGGTTTC ATTGAGAAATGCCGTTCAAGGATAAACCAAATTTGTGGTCTTTAAAGACAAGTGGTTGTTTAAGAAGGTT TTACTTATTGAGCCCTGTAGATGTTTATAATGTCATGTTGTTTCAGTGTGACCTTTTTACAGTCTCATAC AGTCAAACATATGAAATTTTTCCTACATTGACGAAAGGAAAAACGGGAAAAGGTGGTTAGTTTCTATTGA ATTGGAGCATTTCTTCAAATTAACTTCACCATTCAGAAAGTACATTCCACATAAGGACCTTTCATGTTCT TAGGCTAGGTTAACAATACCTGAGCCCTGTTCCATAAAACTTGTAAAACCTATCATCGATAGCAAATTTC CATAATTAATATAAGATCCAAATTTACGAGAGCAAATGTGTCAAAGAACATTTGGTTCATATTATTGTTA ACAGCCTTTAGGGTGGTAATGTTGTAAACATACAACAGTGATGATGTTTTAGTAAAAAGCATACATGTCC ACACTGAATGTGTGTTCCTAGCCAAGGTATTTAAATATTATTGCCTTTCTTAACCCAGAGAATAAAAATG GCACATGGTATGTGCCAAACCATTGCGCCTATTCAGGCATTGGTATCAGTATCATTACTTAAAGCAAGGA TTGGATCTCAATATCATTTTCAAACAGTATTTATTGTAAAAAGCAAGATTTACAGCCATCCTAAATTTGT TGATTCTATAAAAAAAATCACCCGTAGAATATCCTGGGTTTGCCATTTTTATTGAATAGTTGTGTGGAGA TATGACATACCAAAGTATTAAGAAAAGTACAACAAGAGTGTGATTTCAAGGTTTGAATTCGAATTGGTAT TAACGTTCTTCTTGTTTTGGAAAATTATTTGATGAAAGGAAGATATATCTTGTTGATTGGGTACTCACAT TGGTACTCTATAGAGTTGGAATGTATGAAGTGGATGAGCTCTGCATTCTTACACAGTTATTAATGTGGGT AAAAAAAATCAGTACAGACAGTGGTGATCTGAAAATTGGCAACAAAGGGGACATTTTCCTACATCTTCTA CCCCCTTCCTTTGAGAATGTAAGAAAGAAGTGCAATTCATTCTGAAAATAGAAAACTGAGAAATTGTTCT TTGAGAGAGAAGGGAAAAATAATTCCCATATACTTGCATAAGATGTACATGTACTTATATATTTTTTAAG CCAAGAGCAGATAACGTTTTTGAGATTTGACAATGTTGGGGAAATATTACGTGAGTCAAGAATACTTATT TGTGGTTCTAAGATCAAACCTACCACTATTTTATGATTATAGATGTACCTGTGTATATATTTAAATACAT TTCAGCACCTGTAAATATTATGCAGGAAATCTTCTACTTGTAAATGATTTTATCAATGTTTTTTATCATT TGGCTATTAAAGAAGATGGTCCTCTCTGTGATGAGAAATGGTTCATCTCAGGGGTTGTTAAGAAATGTCG AAGGAGATACTTTTTCTGTCTTCTTTAAAAAAAGAAGTTGAAAATCATTGGAAGAGGAAGAATGTTTGCA TTTTATAGGTACATCGCGGTATATTTGAGTTTTGTTAATCAAACTGCACATTGGGAGTAATTCTGTAGAA GTTTGTGGAATTGGTGATCGCATTGTAAAATATGTACTATCCTAGCTTATGAGACCATTGAAATGTTAAC CTAATCTTTTCAAAACTTTCTGATAGTTGATGTACACTGAAAATCACCGAGACGGGTATGCACATATTGG ACATTGTGTTTTAATACTAATACTCTCCTCCATATCTCTTTTGGTTTATTTTACTTGACAAATTTCAAAT ATTCAAATATTTCATGAAAGTCAATGTGAAATCAATTTTATCATATCAAAGTCACATATTTTTTAAAATT ATCATTGGAACTGAAGATTGAAATGAAAGGTCAACATTTTTTGTTGTACCATTATTTACAAATGTACAAC TGGTATCTTTAATAGGGCGAGGTAATCATGCAAATAAATCCATCCCTTTTCCACAAATTGTTATAATGCT ACAACATAACTATCCTATTTTGCGCATGTTAAAATGAAGCATATGTATCCCTTCTCCCAACATTTACTTT TTAAGCTCATCCCAGTCTTAGCATGTAAATTTGCTGGTTTTAATATTCCCCTGACATCGTGGTTTTGAGA AAGGGGGACTCTTCTCATCATGGTTCAAGGGTCAAAATTCAAAGTTCAACATTATTTTCTCTTATTTTTG TACTTCTTTGTGTGTTTTCATTCCCTCTCATCACAACCCAAAGGTTTTTGTGCATTCCAAATCAGCCTGT CGTGTCTTCTTACTATGCTCTACGTTTTATTTTCTGATTTTTTTCCCTCTGTATATTTCAAACATACTTG TTCATGTCTCTACTTTACATTCAAGATCAAAACTGTGTAGAAAAGCACTCTTTTTTTGTTTGTTTAAGTC ACCAATTGCATGTACATGTACAGTAATAATCTAGAATTTGTGAATTTTCAGTTGGCAATTTCTCCTTTTT CGATTCACAGGGCCCTCCCTGTTTATCATGGTTGTTTTGTTTGCCACTTTTGTTTTGGTAAAGAACTTCA TTCAAGTATTGAATTCATGTAAATGAAAGGCAAAAATCTGTTCATACCATGTTGTTTTTTTTTCATTCAG AGAGAGTTTTTATAAGTGAAGTGAATTTGCATGCACGTGTTTTAATCTATTTAGTAGCATTTGATCTCAG TATAATATATATTCTCCCCGGACCATAGATCTAGGGCCAAGTAATTCTTGGATTTAGTATTCAGCAGGTT AAGGAAAATGATGTTGACTTGCATTGGAATTGACAAGTTATATTACCTCTAAATGAACAAACAAAATATT TTAAAAGTTTCAGTCTATGGGCCTATATATATTTTGCCCTTTCTGAACCTTCCTTCTGATTTGTTTAAAC CTTACAGAATTCTTTTTTAAAACAACTTTTCCTATGAAATATTTTAGTTACTTTAAGTATTTGCATCATA ATATTGTTTTATAGTTTCTTAGATCATTATAAACCATGGTTAATAAGTGTATCCCTCAAAATATATTTCA ACTTGAATTGCAAATACTTTCTCATTCCTACATTACCAAGAAGCAAAATCAGTGATTGTGTTTAGTGCTG CAACATCGTATCTTCATAGGGATTTTTGAAATACTTGTTCTCATAAAGTGTTTTAAATGTAGTTCACTCT CAAAATCTGAGGTGATGAAATAGTTAGAAGGCTGAAAAGATGATAATCTTTAAAATATTCACCCTTTCCA TTGAAAGATTTGCTCAAAGCAAACCAAATTTATATGAGATGTTTGAGTTTCATATAACCCTGTATTTCTT GGTAGTTATATACATCTGTTAACAGTAGTTACTGGTTTAGATCTGTTTTAAATGTCTTTTTTATGAAACG CATACGGTATGAAATAATCTTGGTCTATATTTATACTTGCTGTGTATATCACTTCTGAGTCATTTGTGGA TTCAGGAGATTGAAATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds