Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974678.1 PREDICTED: Strongylocentrotus purpuratus ankyrin repeat and IBR domain-containing protein 1 (LOC582140), mRNA ACATGTTCATGAAGTGATGTGTCAAACACGGAGGATTGACTGAAGGCAATAGGGGGATTAGTGTGGATAA CATGATTAGAGGTCTGAACTATAAAGCTTAGTTTGTCCTTGTTGGATTAATACACCCACTGCAGTCTTAC TTCTAGTGTCTGTCTGTCTGTCTGTCCTGACTGACAAACAAATACCTACATATTGAACGTGAAGGTATGA CCATGTAGGTAGTAATTAACACATGGACACAAAAGCTATTGAACAAGAGCAGAACTATATTACATACATG TAGACAGCATATCTGTCTTTACAAATCATGTTGTCATTGACAATCAATGTGAAAGTAGAACAAACAACAG CTTCTTGGTGATAGCAGAAAAAATGTTACTATTTTCATCATAGATTTGTGTCTGTGGATGTAGAAATGAT TGAAATGAAGGAGAGTTTATACTGTGAAAATATAAATTCCTGAAACTAACTTGAGAAGAATTCATTAACA AGTAAAGTGTGAGGAATCAAAATGGGAAGCAGTTCATCCAAGTTTCGGAAGGCCCTACATTCGGGGGATG AGAAGACAGCTGAAGAAATCTACCATCACAGCCAAGACTTTCAAAAGCAATTTGACCCTAATATATCATA CGGAGAGAATTATGATCACAATACAGCTCTTCATTGCTCCTGTAGACATGGCATGCACAGGCTAGTCAGA TTGTTTCTTCAGAAGCACACTGGTAACCCTATCAAGCGTAACATGAGTAACCAGACCTCTCTACATTGTG TATGTATGGCTGATCTACCCCGCCCACCGTCTTCTACATCCAGCTATTCTCAGTACTATTACTCTCAGCC CCCTGAGAAGAAAAGAGCAGAATGTCTTCGTCTCATCCTCAACTGGCAAGGAATACCTATCGGTAATGGA GAAAGGGAAAAGATAGACATCAATGCAGTGGATGATGAGGGATGTACTGCCTTGCACTATGCATCAGCTG CTGGGTATAGGTCATTAGTAGAGACGCTATTGGAGAATGGAGCAAGTTTATTTGTTGAAAATGGAGATAA GGAGACACCATGTGACTGTGCTGAGAAGAACAGATATTATGACATTGCTCAGCTACTAGAGTCCAAAATG GTCTTCTCGCAAATAAGTGATGATGAAGTAGTGGAGGAATTAAGTGCAATATCCTATGAAGAGAGCTATG TTGGGCTAAAACCACAAGACTTACAAGAAGCCAAGGATGCCCTCGTTGTTGAGACGGCAGACATGCTTCG TGTTCCACTCTTCACAGCAGAAGCTCTTCTTAGGAACTATGAATGGTCAAGAGAAGCGCTTTTAGAAGAG TGGATCTCTCATCCTAAGGAATGCTGTGAGAAATCTGGAGTTAAACCACCCGAGGATCTTGAGCACTTGA TACGAGACCATACCCTTACCACTGTAGAGAATGAACCTGGGAATCAGGTTGTAGCAGGGGATGAGATAGA GTGTGATATATGTACAGAGCTTATTTCAAGGGAAGAATCGCCGGTAGAGATGCCTTGTCCTCACCACTTT TGTAAAATGTGCTGGGAAAGATATCTTTCAGGAAAGATTGCAGAGGGCAATGCTCATAACATCATGTGTC CTGCCTTTGAATGTTGTAAGCTCGTTCCAGTAGAGATCATAGAAGCTATTGTATCCAGGGAAATAGCTAG GAGATTCTTACAGTTTGATATCAAGGCCTTTGTTGATACGAATCCAAGTTTGAAGTGGTGCCCCAAGGGT GGTTGTGGTCAAGCAGTCAAACTGCCTCTAAACACTGACCCTGTATCCCCTAGGGATGTATCCAGTCCGT CTGCTCCACCTCCAATGTCTAAAGCAGTTGATTGTGGATGCGGTCATCTCTTCTGCTGGGATTGCTCTGG TGAACCTCATGATCCATGCAGCTGTGAGAACTGGAAGAAATGGAGTGAGAAAATCGCAGAAATAAAACCA GAAAAACTGAGTAAAACTGAAGAGGAGACTGAAATTGCTGCAAACTGCCTGTGGCTTATAACCAACTCTA AGTCCTGCCCTAAGTGCCATTCTCCTATCCAGAAAAATGAGGGATGCAATCACATGAAATGTACTAAGTG TAAATATGATTTTTGTTGGGTGTGCCTTGAAGTATGGAGCAAGCATAGTTCTGAGACTGGGGGTTATTTC CGTTGCAATCGTTATGAGGCCGTCCAAAAGGTGGAAGAGAAAGCAGAGGGTCTCATGTCAGAGGCTGAGA AGCGTAATAAGGGGATGCAGGAGTTGAATCGTTTCCTTCACTACTACACAAGATTCCGTAACCATGAGAA CAGTTATCATCTAGAAGAACCTCTACTAAGGAAAGCACCAGGGAAGATGAGGAAATTAGCTTGCCACTCA GATGCTAAAGCTTCTAAAGAAGAAACTCAGTTCATTGTTGATGCAATCCATGAGCTGCTTGCAGCTAGAC ATATACTCAAGTTCTCCTACCCTTATGGCTTCTACCTGGAAGACAGAGGGGGCAGCAAACAAATCTTTGA ATTTATGCAAAATGAATTGGAGGAGGCATCAGAGAACCTCTCCCAAATGGTTGCTAGAAACTACCTACGT ACACCCCGTACTAAGATCATCCAGGCTGCTCATCTTACTAAGAGGAAACGGTATGAGTTCCTTTCAGCTG TAAGTAAAGGGTTCCTACCACCAGATGTATCCTCAGACTCACCACAGAGGAGAAGAAGAACAAGTTCATC TTGGTCCTATCAAACATGGGATGATGACTCAGGGGATGAGAATGATGAAGCTCTGAGACGAGCTATTGAA GAATCCATCCAGGATGCCATGGCACAGTCTCAGAAACAAGAACAAGATGAAGATGACTCAACGACTGATT TATCCAGAGGAAGGATGGGTACTGAACAAAGTCAAGGAGGTTCTTCCACCATGACAGCAGGATTGCTTCG TGCCTTAGAGATGTCACAACTACTTCTTATGCAGCAAACTGAGATGCTAGACACCCCTACTACTAGAGTG GATCAACCCTCTTCCAGTACTGATACTGAACAACAGAATCCTGGTGATGGGAGCAGTCCATCTACAAGCA CTCTACTGTCTTCAAGATTGTCTCCTAAACGAGGAAAGAGCCCCAATAGCAAAGAGCCCCAGACCTCAGC AACAGATAGTTTTGATGATGATTTCAAGCTAGCTATGGAGCTATCACTTCAAGATTCTGGGAAAGCAACA AAAGAGAAACCGAGGCAGACCCTTGCCCAACGTAGGAGTTATAAGACGGCTACATCAACCGGGCATAGCA TCAATCCAGATGAACTCTTAGTAGACATCATACCGAAGGAAAGAGGGACACGCTCTAACTCCCGTTCCCA TGGCAAATCAAGAAGTGGAAAGTACATCAAGTCTGATCGGCTACGAGTGAGTGGCGGTGGAGCAGCGGCC ACTCTACATGAAGGGTCTGGAGAATCAGAAGCAGAGAGGATACGTAGGATGCGCAAGGAATTCCTTGAGA AGATTGCTGGTACATCTTCCAAGAATGGTGACAGTCTAAAACATTCTACAGATTCCAGTTTGTTATCTGT TGGAGGAGCTGCAGGTTCAAGCACTAGTACTAGATCACCCACAAGCTCTTTGAAGCTTGATAAGCTTACA GTAAGGAAAAAGAGTTCCAGGGGTCATGTTTCAAGCTCTGGTAAAGGATCACATCATCTCAGAACCGGTC GAGCATCAAGTGACCCCCACACTGTGGCCATTGATAATACATTACAACAAATCCAGGCCAGGAACTTGGC TCTATCAGCATCAGTCCAAGATATGAGTGGAAATCCTTCAAAGATTGAAGATGGTGCATCCAGCCATTTG AGTGTATCAAGTAGTGGCAGCTCACCTGCTGGAGGATCACCTGCTACAAGACCGAAGATCAGAATGGATC CATGCCCGGCTTCCTCTGCATCTGCCCTTAAAGTCACCGTCCCTGATCTAGCAGCTTCACCAACTTTCAA CAAAGTACAGAGGAAAAGCCTGTCTGTCCAGCACACACCAGTCAAGAAGTCTAGCCTTGGTGATATCACA TCTTTAGATAGACCACATCTCAGTAAACCCAGGAAAGTGTCTGAGGGAGATGTGACCAAACTAATACAGA CTTCTGCTAAACTCCCATCTACCTTATTCTCTGGTTCAACTCAGCCATCTTTTTTACAACCTGATCCTAA ACCTCTGGAGGATATCTGGAAGAAGGCTTCAGCCGATGAACTGATGCCCTCTTCATCTCCAACATTCAAG CTTTCCTTAGCAACCAAACCTGCAGAAGCAGCAGGGGGTGATGCTATCCTGGGCCTGTCTCTTAGCAACA CTGCTGACTTAGCTACAGATTCTTTCTCTAACATGGACTTTGAAAATGGAAACATGGTTCATTTAAGCAC TGTCCCACAAGCATCTAGTGCCTATAGTTCAAGTGATACAGATATAGATACATCCTTAACAACTTCCCTA GAACCACCATCACCCGTTACTATGGCAACAGAAGTTATTAATCAAGGTGATGAGGTTGATCCCACAGATG ACAAGAATGATGTGTGGCAAGTTTATATTTGATTGAATGGTTGGAAAATGTAATGTTAGATAATATGATT TGTTGTGTTGTAGCTTCTTTGATTAAGATATGCATATCTGTGTCATTGATATCATGTTACTGTACTAATG GGTGTCTGCTCTCTGAGTAGTGAATTAGTAGAATTCTTTGTTTTATTGTATTGAGAATGTGGAAGGGTAA TATGAGTAACCTTGCATTATGTAAACATGTTAGGATGTGTGTTCATGAAGGCACAATAAAGACTCATTTA GGGATGTGGACTTATAAGTTTTATTGCTATACTAATTATTGTATTCAGATCAAGAGAGGGTCTGGAATGA GATTGCGGAAATACTTTTTTTTTTTTTTTAACTGTAAACAAAACACCATTATGTACATGTCTTATTATAG AATGGGTTTAGTAATCCCTGCAATCTTATGGTTAAGAGCCAGTGAGCACACTTGAATAAAGTAATACTGA CTGCGAAACTTATGCATGAATGTATTGCGATATAAGCAAACAATATCAACATTTAAACAATAGCTTTTCA ATATGGCTGTTTTGAAACAGCCGCAATATTTGACCGTATTCAGACTGAAGATTAGAAGAACAAACTAATA TTACAGATAAGTGACCAATTCTGCAAGTAAGCCCTTTAAACAAAGTTGGGTGTGATTTTGAAAATAACTC GCTGCTATTGTTCTCCATGTCACAAACAGTTCATGGAGAAGGTAGATTTGTCAATGTCGCATTACACAGT CACAGGCCATACATGTATTAGATCGCTGCAGTAGGCCTACAGTAGAATTTCATTCACTACGGCATTCTAA CATTAGACCTAATGACAACCTGAGACTCATTATCTTGTCAGTCAGACCGTATAAGTCAGATTTTATGATG TTAAAGAAGAAACAAACCTTTTATTTTAACAAATAAAAAATTGAACCCTAAATATTAAACAGTTCATAAC TCTTGGTGAAAATTAAGTTAATATCATGAAGCAGTGACTCTATTTCATGTGTCGGGGTAAATTGGTTTCA TACATCAGGTAAATCAGTTTCATGCGTCAGGTAAATTTTTGTTGTTGAATTGGGCAATCTTTTTACACCC ATTCTATAAATCAGATGATGCACAGGTTTATTACGGGGTCTGCAGAATTGTGTGCATGCTGCCACTTTGA CAATGCCCAAAGTTACCTTGTGCACACAATTTATACTGACCCACTCATACCTGTGCATCATTTGTATACT ATACACATGGTCTACTACGTTTAATGCTATAATGTGATGATATCTCTTTTGGGCCAATCAATCCATGATA AAGGTGTTTAATATTGGTAAAGTAAATTATTTTTACATTTACAATCCATCATGGCAAAAAAGCAAATACA ACTCATTTAGTAATTATTATGCGATGGATGGATACAAACCATCTTCATGACACAATCATTCAATGCTTAA CAGATTACATTATTTAGATTTGTTACTTTAAGTAAAACATTTAAATCCGTTTATACATCTAAAATTGTAT GAGGTTGTGGATGTCTTTGAATGAAGAATTTTTAGGGTACTTGCCTAAACATAAAAATGTTTAGACATGA GAGTTTGACATGTGAAAAGCATTTTGTAATTCATTTTGTTTGAAGAATGCCTAACAAACAACTAGTTAAT TAGGCTGAAATCATACAAGTATCCTTGAAAAATTGACAATACTTTTGAATATAGATTTTATTAACTTTAG AACTCTGAAATGGTAATAATGACGAAATATTCTTAATCCCATTCTTAAAATGCCCAAAGGTACATACTTT GTATAGTAGTGTATCCAACGTTAATGCCTTTATAAAGTCAATGATATTTTCTCTCTATGAAATAGAAGTG TAAACAATTGACAAGGGAAGGTAATGGCTGATGAGCAGTTTTATGGGGAAAATAATAAAATTATTCTGTT CTTTACTGTTTTAAAGGTTTTTACCATGCTTTCTCTATTACTGACCAAAAACCATTTACAGCTATCCTCT TTTCACTGTTTTACCTTCCCTTCCTCTGCAGAACTTTAGGTGTTTAACAAACTGGGTCCCTACCATGAAA AAAAACAACTTAACAGTTATCACATTGTTAGCTTCATGCATTTTTCATATTTTGTAAAAAAAAAAGGTGA ATATATGACTTCCGCGATGACACAAATAGATTTGTCATACTAGTGTCAGTTTACGCTCATTGATATATAG TGTATGTTAAATGATGCTGACAGGGATATGATCTACATGTATATCTGTGTTGAGTAAACCAGGTAGATAA TCAGAGGTAATATGAATCAATCTGAAATAAAATGAATTGAAACCTTTTGTTTTAGAAAGAAATAATGACT TTATAATAGAAATTATTGTGCTTATCATGTTTTGAAACCATGAATATGATGTATGCATTTTGAATGAGTT TTTTTTATCGGTTGTGCAAGAGATGATATCATAAGTTCTACAATACAAACTACATGTAAACTGAAACATT GTGATGTCAATCACAACCAAAGCACGTTATAAGACAATCTTAGTGATAAACATATTAGCTCCTATTATGA TAGAATCTATATTTCTTTGTTATGTGTACCATATTGTGTATCATGATGGTATTCATTCTTACTACCAACT ATAATCATTGGATGTACTTCATTGTGTAATTTTTGTATAGAAGTGTCAAATGTGGTAATATATTGTGATA ATTGATCTAAGATATGTGTTTGTAACATTTTCAAATTAATGGAATCAACACATTTTTCATGTGCTTTATT TCACATTAAAAATAATTTTGTCAATGAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds