Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011665715.2 PREDICTED: Strongylocentrotus purpuratus ralA-binding protein 1 (LOC580072), transcript variant X1, mRNA TCCCTTATTCAGTCTGTGTCAGGGGATGTGTGAGGGACTAGAGGACAAAGTTTGTCAAACTCAGTTCACA ACTAGTTTGCTTTTATGTTGTGTGAAAAGAATTTTGTTTGAAAAAGAAAAGAACTCATCCTGTCGAGGTA TCATCAGTTTGCGATACCAAATGGCTCCTAAGGCTAAGAAGTCTTTGAAGAAGAAGGATTCTGACTCATT TGGAGAGAAGGATCCTTTCAAGCTCAAGAAGGAGAAGAAGGATGCTGAGAAGAAGAAGAAAGAGAAAGGC TACAAGACATTTGAGGCGGCTGAGAGCTTCTCAGAAGAAGATGATGAAAGAGGGAAAGGAAAGAAGAGAG GCAGTCTGTTCAGAAATCGCTTTGCTCCTTCTGCAAAAACCAAACCAAAGGATAAAGTCAAGGGAGATGA GAAAGATGGAAAGACAGAAGAGCGAAGACCCAGCAAGGATAAAGCAAAGGAGGATAAGAAGATGAAGAGT AGTGGTGAAGAGAAGAAGATGAAAGCAAGCGCAGAGGAGAAGAAGGTCAAAGGAAGCAGTGAGGAGAAGA AGAGGAGTAAAAGCAAAGAGAGGGAAAAGCTCAAGAAGAAAGCTCACACCATTGATGTGCCCTATGTGAA ACCAGAGCCAATATTTGGGATACTTTTGGAAGATGCTGTTGCCAAATCTAAGCTGTATGATAACATTGAG CTACCTAAGATTGTCCGAGAGTGCATTGACTACGTGGAAGAATTTGGACTCACAACAGCAGGTATCTACC GTCTGTCTGGGGTGAAATCCAAGGTGGAGGCTTTGAAGGCACAATACAACAACAACAACGAGAAGGTCAA TCTACAGGATTGTGATCCCACCATCATTACCAGCCTCTTTAAACTGTACCTCAGAGAACTGCCGGAGACA ATCTTGACCTCCAGACTTACTCCAGTATTTGAACACGCTGCAGGTCTGACCACATTGGAGGAGAGACTAG ATGCATTCAAGAAGCTCCTAGGTCAGCTACCAAAGTGTAACTACACCCTTCTTTCATGGACAGTCGTCCA CTTAGCTCATGTATTAGAAAAGAAAGAGGAAACAAAGATGACGATACAGAACCTGTCCATTGTGATGTGT CCGACCATGAGGATTAGCCATCGTACTATGAACATTCTATTCACATATTGGAAGGAGTTTTTCAGTGATG TCAAACTCAAGAGGTGCCCCAAACCTCTTGAATGGATACCAGGGACTACATTTGAAATTCCAGAAACCAC AACGGAGCTTGAAGAGGAGCTACTCCGACATGAATTGATTCTTGCCAAAATGCATGAGGAGCTTAATAGA GGGGTTGCTCACAAGAGCACAGAAGATAATCTATGGGAGGTGCAGAGAGTAGTCACACAACTAAAGAGAA AGTTACGAGTGAGCAGAAGAGTCTCTGAGACTAGACTAGCAGCGAAGGAAAAGGAGATGGAACACAAGGA TACCAAGACGTCATCAACATCATCATCTAAAGAACGTTCTCCTGTAAAGACAATGTCTCCAACACCGGCA GCATTGAAAGAGGATGTCAAAGAGACACCCACTGAAGTTGAAAAGCCAGCTGATGCTCCAGCTCCCGAGG ACAAGGCAGAAGAACCTGTAAGTGGAGATGATGAGGTTGATGTTTTCCAGGAGAAAACAGAAGAAGACGA AGAACAAGTCAAGGAGGAGACGAAGGAGGAGATGAAGGAGGAGGCGAAGGAGGAAAGTAAAGAAGAATCA AGAGCTGAGAGTGAGGAAGAGGTAGAGAAAGAAGATGAACCAGAGAAAGAAGCTGAGCCAGACCTAGAAA TGATGAAACTCCTGCTCCTGTCACAAGCCGAGGTGGTTGCAGAGCACGATGAGTTGATGAACATCCGCAA CGAGCTCCAGAAGCGCATCGAGGCTGAGCGACAGGAGATCGCCAAGCTACAGTCTGTCATCTCTGAAGCT AAGCAATCAGCCAGGAGGAGAGGGGCGTCGGTGGATAGCCTCGACAGCTCTGTCGCATCAGAGAGTAGCA GTGAAAGTGAGGATGAAGAAGAGTTACAGAGGATACTAGAAGGACTGATCAGGGAGAATGAGGAATTGAG ACAGCGGAAAAACATGCAGTTGAGTCATAACATCCACAACGAACGCGAGGCCTGTGCAGAACTACGTGTC CAGATCAAACTACAGGAACAGATGCCTCAGATGCTGGAAGCACTGGCCAAAGCTGGTATCAAGGACACTT CATCCAGACAAAGATCTGGACCTAAAGATCCCTCAGGCAAACCCAAGAAAGTTGTTGCAATAGTAGCTGA ACCTATCATAGAGTCATCAGCAGAGAAGGACATACCTACGAATAAGAGCAGAGAGGACAAGAATGAAAAT ATCAATTCCAACAATAGTCCAGAAGTTCTGGAGGAGAAGAATGTTGATGATGCAGGGAAGGCATCATCTG GTGTTGTGGTGGAGAAAGAGACTACTCAGGATAGACATCCAGAGGAGACTGCCCTGTGAGACAAGCGTGA AATGAAATATGACTTATTTCTTTCTGTATCATGTCGCTTGATGTAACCTGCAAAGGGAATCTTCCCGCAT TGGAACATCCTAGAAGATCTTTGCCCAAGTTAATTTTTGTTGTAAGCCTCAAAGGTTTTTTTTCCTTTTC TGTGGTACAAACATCATGGTGAATATAATCATATTTTGATTGGATGAAAAGAAATATTACAGGTGATAAT ATTTGCCATCATGGTAGTTGCTTTCTTTGTCAAACTTTTATCGTGAAGCAGATATAAAGAATCAAAAAGA AAAGAAGTTAGATGTCTCACAAAACATTGCAGCACTTCCCTTTTTATAGGGATCTTACATAACCCTAAAC AGATCTCCAAATAATAAAGTGTAACTTTGTAGAGTTGAGAAGAAGATTTGCAGGAATATTACATGCAACT TACTCAAGAGAAAGTATAATTTTTTCTTCAATAAAACAAGATCATGAACCTGGAATATTTTCTTTAGATT ACACTCTATAAAGGAACATTCACTATCAGCATTAAATGCATGTACCTTGATCTGAGCCGTTTCATATTCA GGTAGGGAAAAAAGCTCAGATTCTAAATGCTGAGACTATTCATGGTCTGAGATTTAGTTGTTGGCAATAA TCATTAGTTATTATACGATTCCACCAATGTTTTCTTGCCATATTCTTTTTTTCAGTAAGAACGATCTGTA ATATACTGATTCTAACTGTACCTGGTCATCAAAAACAACGATTATCAATAGTATTGTTTATCAATGCCCT TTTTTTGTACATGTAAATACAACCCAACTTTAGAATTTCTATCGTAAAATTTCGCAAATATCATCAACAT TTTTTGCTGAGTTGTAATTCATGATCTCAGAGAATTACTCATTATATGATAGAACACTCTTTCTATGTAA ACCCCTTCTTTGTCTGAAATCAATTTTCAAGTGTTTCATTGTTCCATCATTTGGCATAGATATACATTAT TCCTTGCACTTTAAACAAATGAATAGTACCTTGAGGACCCTTGTCTATTTTGTGCATGTCTGCATGGTGC TTCCTGCTCTATTTTGTTGTCGGCCCCCAACTATGCCTCAACCTATGTTCCTTAACAGTTGTTCATCTAA ACTAGAGATTCAATTAAGGTGAGCAGCTATTGAGAAATTTCTAAATCTATTTCAAGCCATGACAATTAAG GAAGTGTTGTTTCATAACTATTGTTCACCATGGGGCTTATTTTCTGTTATATTAAAGACAATGTTAAGTT CTGGACCTTGTTTCATAAAAAAACAAGTTACAATAGCTGTTTTAAGCTACTGAAATTGTGGCATTTGATT GGCTTAGAGGATATTTGTCATGAATTATGCATTTGCTATTGATATCAAGTCTTATGAAACAGGGCCCTGG GCATGCAAATAGATTGTGAAAGAACTGTCTGGAAGCTAGTTTTAAAGGTTGATTTGTATGACAAAAATAA ACTTTCTGTTAATTATGTGATGTTCATACTTCTTTAATTCTTAAATGTTTTCATTTAAGATTCTCTTGGC TAATTTACTCAGGGAGTTGATCCCTGCAAATACATGTATACTGTTTATCCCTTTCTTTTCACTCCTTCTG CAACCCTGAACCCACCCACATATTTTATACTCCTTCTCAGTATATGCCAAATAGCATTCTTATTTTTTCG TCATCAATAAGGCACACATTTTTGCAGGGCTTTTATTCTTGTCTTTTTATCTCAAAGTATAGGAGTGTTT AGAAACCAAACTTATTTCATGAATTCTACATCTGTTAAGAGCCTGTGATGTATACAAGTATTACAAAGGG TTTGTGGAATGGGGCAATTGATATAAAAAAAAACTTTCATGATTCTTCACATTCAGGCAGATATTGACAC ATATATCAGTTAGAGATATAGTTGAGTACTGGTCATGCAGTATAACTTTTTTTGAGCAAAAAATTTCCTA GAAGTTCTTGGGAAGTAAATTGAAATTGATGTATACTGTGAGGTATTGGAATTATAAAAATGACTCAATC ATGCTGAAAATCACTTGCATTGCTCACAGAAATAGGTATATATAGAACTATACTACACACATGGCATGTA TGTTTGGTCCAGCTGTTTTTCGTCATATTTGAAATATAATGCATTTGAAGAGCAATCCTTGTCAAGGGAT ATTTCTACTATGATATCTTTACAAACTGACCTTAAAAGAGTATATTATACTCTTCCCTTAGGACTTTGGT AGTGATCTGTAGTCTGCTATGTGTAATTATAATCATTTGTATTCAAGTGAACCAAAATGTGTAGAGGCTG TATTGCTATAATATGATACTACTTCCATTATTCCATATCTATTGTGTATTTATCTATTATGAATTTTAGT GTATTTAAATCACTTTAATGTTCTAATCCATTCTCATTCAGTAGATCTACTTGACACTGTCACATCATAA ATATAATTTACCAAGTACTCTGTGACATACATATATCTTGTTAGGTCCCCCATACCCCCCCCCCCCCAAC ATTAAAAGCTCAAGTGTTATTTCCATAATTCTGCCTACCCTACTAAATTTGTTTATTCTTTGATATCATT ATGGAAATGATTCAATACTTCTTAATACTTTGAAAGTCACAGAGTTTTACCTCAACAATGCATTATCAAA AATAGACTTGATCTCAATACTAGAGCAGGACTCTAGTTTTCATACGATCTATTCAAATGAAAAGTACTGC TATGTGTAGTTGACACTGCTTCTTACCTTTGTAGGGGCAAAGATTTTCACATGCTTCACAAAGAATGGCG ATAAAGTGCTATTTGCGTATTCTGCTAAAGTGTGTAAAATTTCTTTGACTTTGAATGTAGTCATTCATTC ATTCGTCATGATATATCATTTCTTTAAGTTTTCAAGATCAAATGCAGCCAAAAAGTCAAACTGTAGTTTA TCACTTAAGACTTGTTGAGATATGTAGTGGTAAACCGTAGCCTTTTTTTTAAAGCAAGTAAATGAATGGC AACTGGATGCTACATTGAGTTTTGTGTAATTAGATAAAGAAACGTGAAGCGTATTGTACTTTGGGTCAAT ATTTGAAGAAAAAAGAATATAGTTTACTGCTTCATATCTGAACAAGTCTTAATCATAGCATGACATTTTA GAAGTAGACAAGTTTTGCAAAATCTTATAATTCATACCTGTATGCATTAGATTGTTGATCAGTCTCCGTT TCATTTATCTACTTACCTTCATGTGTAGTGCTGTAGTGTAAATACAATGATATGTACATGTTCACCGAAA CAAGAAATAAATATTCATTGAAATTAATCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds