Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT100724.1 TSA: Strongylocentrotus purpuratus WHL22.162662.1 mRNA sequence TACCGCGCTAGCTGGGTTTAAACATAATTGTCACAGTCACGATCATATCTTGTCCCGTACGAGGTTTGGG CAACACGGACCATCATCCTACACCCGTCTCCCTCTCTCTCTCTCTATCAGCTCTTCATTAGATCAGCTAT TTAGACCCATCACCGAGTCGTCCATCTGGATTTGATTATGTCTTTTTGATTTGCGTATGATGATGAAATG AACTCTGAGTGACATTGGGGCGTAGTGGTTTGTAGTCGACGGATGCCTTTCAGTAGTTCGTTAGAAGCTC TCAGTGAACGGACGTACATCCAGAGCAAAGGATTAGCTACCAGATTTGTCCATATAATAACTTCTTCATC AGTTCGCAGACTTCACTTTGATCAGCATGCTTCAGGAGTTCTCTGATCTCTTTACCGTGTTCATCGTCCT CTGATTTGGGAATAATACTTTAAAACTTTATAGGATTTGTTTTAAAAACTTTTCCAACTATTTCTGAAAT TATCATCTAAGGATTGATCGTCGATCTTCTCCTATCTTCTTTCCTGAAGTCGGTCATTAACCCTATTTTA TTCGGAAGCATGTACAGATCACGGGAGGCAAAGGTGGAACCTCAGTGAGCTTACCAACTTACCCAGAATC AATACTATTGACAAGTCAGACAGGTGACTACGGCACGTCCACGCTGAAATTAAAATAAATCTCTCCTGGA TTTTAGTGAAAATCCATCGAAGCTTGGTCGAATCTGCTGGTTTATGTGGTGAAACGAGACGAAACTCAGT CATTCTTGATAGCAAGCCGTTGGACATTGATTCGTAGTTCTTTATCGAGATGATGTCGAGGTGCTTGTGG GCTGTGGTGGCCCTGTTCGCTGGCTTCCAGCTGGCGACGTCGATGAGGTACCAGACTACGGGTACAACCA GGCAAGCCACATACCGATACGTGTATCCCGCCAACCGTGTTATTACTGGGCCTAACGTATGTAAATCAAC ATGCTGCTCTGGCTGGCAACTAAATGCTTACACAGGAAGATGTACAATACCAATATGTCAGCCACCATGT CAAAATGGAGGTCGATGTCTTCGGCCAGGCAGTTGCGTGTGCCCAACCGGCTACGCGGGGACCTACTGCC AGTACCAGGCCTACGTTAGAACAGGTTCAGGTTCTGCAAGCTCCATCCATACCAGTTCCTCGGGGTCCGT TAGACCTGGAACTGGTGGGTACAGTAGAATAACCTCCAGTACATCGACTAGACCACTCACTGGAACCAGT ACTGCCACCTTCAGTATCAGACCTGGGTCGTCCACAAGTTCAAGAACTTACATTTCAAGGGTTAGGCCAG GAACCGCCACTACTGGATCCAGGACTTATGCTGTAACGTACACAACAGGGGGTCGAGGTAACGTAGTATC CACCAACGGTCAGCGCCCCTACCAATCAACGCACTTGTCTCCTTCATCGTCATCGTCGGGATCATCGTCG CATTCGACGAGCGCTGTTGGTCTACCATCTTCCCAAACCCTAGCGCGTTTCACCATGAGGGGTCCGTGTT TCCGACGAGTGAGCTCCTCTCATTGCATGGCCCCTCTCAGCGATATGACTACCCTCCATGATGATTGCTG CTCTACTGTCGGACAGGGATGGGGTAATGGATGTTACGCATGCCCACAGGTGTTAGGGCAAGAACTACAT TGTCCCAGCGGATTCAAGAAATCACCGGATACAGGAAATTGCATTGATGTAGATGAATGCAATGCATTTG ACAACATTTGTATGCACGGCTCATGTCTGAACTCACAAGGTAGCTACAGATGTCGATGTGATCAGGGATA CATGTCAGATACGTCTGGAACGCAGTGTGTAGTTTCAGTGAAGCAGATGTGTTACACCCGGGTGATCAAT GGACAATGTTACGGAGGCGGTGGATCTCGGATGCCTACTACACAGATGCAGTGTTGCTGTAGCTTGGGAT CTGCATGGGGTGCTGCCTGTGAACGATGTCCACAACAAGGCTCGGCTGAGTTCCGTGCCATGTGCCCACA AGGTACAGGGTACCATTATAAGCCCTCCAACGGATATAATCACGTCAGTGCTATCGTCAGTTCCGGGAAT CCTCGCCCCACGCAGAATGTGGACCCATGTGCCACAAACTCTCGGCTGTGCCTCAATGGTCAGTGCATTA ATTCTGGGAACGGGGCGTACAGGTGTGAATGTAGCAGAGGGTTCCGTCTCAGCTCCAGAGGAAACCAGTG TATTGATGTGAATGAATGCAGCGAGTCCAGAGACATCTGCAATGGAGGACGATGTCTGAACACCTATGGC AGCTTCCATTGTATCTGTTCTAGGGGGCTGGTCCTGAGAGGAGGAGTATGTGAAGACATTGATGAATGTA CAGTCAGGAATGTGAATCCATGTGCAGAGTATGTATGTCAAAACACATTAGGGAGCTATCACTGCTTGAG AACTGAATGTACCAATGGTTACAGATATGATATAACACACCAAAGATGTGTAGATGTCAATGAATGTTCA GATGCTAACGTATGTGAGCATGGGCGTTGCATCAACATAGAAGGCTCTTACCGCTGCTTGTGCCCTCAGG GATTCACTTCCAATCCTACAGAAACAGACTGCATTGATGTTGATGAGTGTGGACAGACCAGAGACACACC TTTGTGTGGTGAAGAGGCCATCTGTGTAAATGAAGTGGGTGTTTACAGGTGTGTTTGCACTGGGGATACT GTCTATGACAGTGAATCAAGAACCTGCCAGACCCCCGTAGAAGTACAGGGCGCACCAGAAATTGTTGAAG TGGATAGAAAGGATTGCTATGGCAGCATCAGTGATATGAACTTTTGTTCCAATCTGCTTGGTTCTAATGT CACCCAACAAGAATGTTGCTGCACCGTTGGGGCTGGGTGGGGTGATGACTGTGACCTCATTGTCTGCCCC TCACAAGGCACACTTGCATACAATGAGACATGTCCAGTTGGGCAGGGTAAGCATGTAATTACACTGAGGA GACCAGTAGAAACCGTCAACGTACCCACCACTTACCCTGAAGCTGCTGCACATCCATCTGCAGGCCAAGA AGCTAGCATCTTAGGCATAAATGAATGTGAAATCTTCCCAGAGCTTTGTGGTCCTGCAGCTTGTGTGGAT AAAGAAATCCTGTATGACTGTAATTGTCCTGAGGGATACAAGTTTGATGATGCAAGCAAGACTTGTATAG TTCATGACTCGTGCTTTGTGTACCAAGGAGTGTGTGGCAATGCATCTTGTGAAAACACAGAAAACAGCTA CAACTGCAAGTGTCCTGGAAGTTATGAATTTGATGCAAGCCTAAGAAGATGCATGTCGATAGACCATTGT GAATCACCGGGTATATGTGGAAACGGTACATGTACGAGCACAGAGAGAGGTCCAGTGTGTAGCTGTCCTG AAGGTCATCGCTTTGTTCCATCTCAAAGGTCATGTGAAGTCCAGGATTATTGTATTGTATACAATGGCGT CTGTGGGAATGGTACATGTGTGAACAGAGCTGATGGGTATGACTGTCGTTGCCCTGAAGGACAGCGCTTC AATGAAAGGAGCAGTGCTTGTGAAGTGACCAATTTCTGTGTAGTGCTAAGTGGTATCTGTGGCAATGGAA CGTGCATCCCAACTGAAAATGGATACACCTGTAGATGCCCCAGTGGCTTCCAGTTCGACAGTGATGGTGG CTTTTGTAAAGACATTGACCTGTGTGTAGATCATTCTGCTCTATGTGGTAATGGTACTTGCGTGGATCAG GGACAAAATTTCATCTGCATCTGTCCTGAAGGATTTCAATTCTCCAATACTAAAGTCTGCATTGATATCA ATGAATGTTCTACACCTACATCTCATTCGTGTGGCTTAGAAGCATCATGTATCAACACACATGGCAGTCA TCACTGTGCTTGCCCAGGTGGCTTTGAGTTCAATCCAGCATCAAGGACATGTGATGATATCAACGAGTGT AGACTATTACCTGATTTATGTGGTAATGCAACCTGTACCAATACTGATGGTAGTTACCAATGCTCCTGTG CTTTTGGATTCATGTACAACCAAACACTCGGCATGTGCATAGATACCAATGAATGTGCTGTATACAGAAG TATCTGCAGTAATGGTACCTGTATGAACACACAAGGTAGTTATAGATGTGTGTGTCCCAGAGGGTATGAG TACATCAGTGGAAATGGCAATGGATGTTTAGACATCAATGAATGTAGCTCTGTACCTGGGCTTTGCGGAG ATGCGACCTGTTTGAACAGAGAAGGTAGCTTCTTGTGCGGATGTGACCCTGGTTACTACTTTGAAGAGCA AGATAGGATATGTGTTGATATCAATGAATGTTTCCTATCAGAAGAGATATGTGGTAATGGTCAATGTGAG AACAGTGTAGGGTCTTTCAGGTGTATATGTCCTGATGGAGCAAACTTTGATGAAGCCGGGAGACAGTGCA CCGCATTAGAGAGTCACACCACATCTCGTGATCCTGAGGCCATAGAAGCAGATAGATGCACATCTCTGTG TGGTAATGCTACATGTGCTACTGATGCTAGTGGTCTGGTCTGTACTTGTCAGCCAGGATACCAGTATGAT ACAGCCAGTAAATCATGTGTTGATCTTGATGAATGTGAAAGGAGCCCTGAGATATGTGGGACTGCTACAT GCCAGAATAGGATAGGTGGTTATACATGTATGTGTTCTGAGGGCTATGTCTACAAGAGGAAGAAGAAGAT ATGTGGAGATTTGAATGAATGCAAGAAGTATCGTACGCTGTGTGCTAATGGTAGATGTGTGAACAAGAAA GGCACATTTGTATGCTTATGCTCTCCTGGTCAGCAGTTCAGCTATAATAGTCGCAGATGTGTGGCTGCAG CAAGTATGACTGTGTGCAATAGGAACCCAGGTATCTGTGGGAATGCAACGTGTTCATCTGAAGGACATAG TATTCGCTGTTTGTGCCCAGCAGGATACGACTATGACGTGACCATCAAAGCATGCAACACAATCGGTGAG TGTGACCAGCCCAATAGATGTGGAGAAGGAGCTCTGTGTGAGGATACTGTGGCAGGCTATAGATGTGTGT GTACAGCCGGATATATTTATAACTACCAAGATGGTGGCTGTAGAGAGATTCCACAGCCCCCTCCAGAGGC ATCAGGTGGTGTGGGGTATAGACCAGCCGTCACCCAGACAACCCCTCCTAAGAGGGGTCTAAACGAGTGC AATTCTAGCCCCTGTATTAATGGGGTATGCATCGATAGACCTGATGGGTTTATCTGCCAGTGTGTGGAAG GTTATCATCTCGTTGATTCAGTTACATGTGAAGATACAAATGAGTGTGAAAGTCCAGATGCTCAAGACAT ATGCATGTATGGAAATTGTGTGAATGAACCACCAGGATCTTTCACATGTGAATGCACCGATGGATTGACT CTTGACAGTACAGGCCGTAGATGTATTGAACTAATTGGGCCTGTGTCAGGAGGAGGGATAGATGGGGGAA TCCCCCCGGAAGAGCCATTAGGCCCATGTTGGGGACAATCAGATCCAAACCAAGACATCTGTAGTAATGT AGTTTCACAAGAGAGCACCTATCAGCAATGTTGCTGCAACACTGGCTTAAGCTGGGGCAAGGAGTGTTAC TCATGTCCGCTTAGACATAGTGAGGAATACAGAATGCTGTGTGTAGCTCTTTCATTATTCAATAATCAAG ATGGAATTATTAACCAACAAGCAGACCAACCAGTACCAGGCGTTCCTCGCTCATAGTGCCTAGCCTTTGA TCAAACCCATCAAATGATCTTCATCATTCAAAACCAGCGGACAAGTTTGCTGATGTGCATCTCACTGCTG ACAGTCACAAATGGATTGGTCTTAGAGGATTCCGGAATTCAAAGTCGAGATAACCTGTTACACATTCAAA TTTTAGCCAACATTACACTTCTTCTGTATTTATGAACTTTGCCTATTCTTGTGTCACAGCAGTTATGTGA TGTCTCGCACTACATATGGGCTGTAAACACAAATCATTGTTGCTATAACTCAACTTATTACAATTACACA GTGGCTTTTAATTGACACTATTTGTGAGCATGTACACTGCCTTTATTTCACCGTCCATCCTACCATAAGT GTGCAAAATCACTTGATGTTCTGCAGATATTAATATCACTTGCTAAAAAAAAAGTTTTTCACTGCTTCAA AAATGATTAAATGTGTGCCACAGCATTCTCTCCAGCACCATGTTGTGTGATCTTTGTCAGGTTCAGGTAA CTGCTTTTCACCCATTTTCCTATTGAACTTGGGGGGGGGGGGGGTTCGTGTATTAGTGTTCTTCAAGAGC ATCTATAACGTCAGATGTTTTGGATGATAGGGTAGGGTGACCGTATGTACTTAATTAGTGTATTGTACAA TGTAACTGATCTTTCATCTGTGTACTGTTGAAGGTGTGAATTGAATGGAACTGATGCAAGAACACTACTG ATTGTGCTGTGTACTGAACTACATCAGTTTTAATTTATAGAGTAGAGGTAAATTATAAACCCATGTTACA TCATTTATCAACTATTTGGGAACCTGTTCTTACTAAACTTATGGTGTCTTGATTTTTTAGAATAAAAGTT TTTTTTTCCCCTCTGAACTTTAAGTTTGTATTGTCATAAAAATGTTGATGTTGTCCAAGGCTTTCCTTGG TAATTTCATGATAAGAGTAAATTATGAAAAATGAAATCACCTCCATCTTTAATTCAAGTACAATGTGAAT GTTTTATGGTATGCATAAAGAGGATATGATCTAGTGACTGTGATTGGATATAGAACTGTGTATATATGAA GTTAAAATCTCAACCAATATTCTTCTTTATTCTTACCAAGTGGTTTCACAGTCCATTGTATTAGAGATTT AATACATGTTAAAACATGCCAATAAAATTAACAACTGTGAGTCTGGTTATCATGGTACAAACAGAAATAT GTAGATTTTTGGTTGTTGAATTCAACCATGTAATATTAATTTATAGGATGAGGAATTTTAGCATATTTAT TTGTTCTTGTAAAATATTGTTAAATAGTCATTTAATGTCAAGTGTAATGTATTTGTTATTTCTAAGAAAT TGAATGTTATAATATTCTTTGTACATGATTCATTTTATTTTGTAACTACTATCTATTTCATGTTATGTTG GTAGAGAATAATTGAAGAGGGATATATTTATTGCACCACATGAGACTAACAAAAATACTAGAAATGTTTA ATAGCAGTGTGAAATTCCCCTCAACTACCCTTTTATCTTTATGAAAATTATAAATGAACTAGACCATTTA ACACAAGCTGACAGATCTAGATATGAAGATTGCTCAAGTATATAATCTATTTTCAGAATCTCTGTAAATG TATTTCAAATCATATACTCTTATTATTCGAAAAATTTCTGTCAAATGTGCTTTAGATTTTTTAGCACCTC CTTTTTTTTTTTTTACTAAAGAGCTGGAAGTAATTTTGGTGTACAGTACAACCTTGTATTTTATCCAAAT GAGTATGTGATTTTAAATTATTTTTGACATGTTGTACAAAACATATTTTATACCAATTCTTTTCCAATGC AAATGTTTTCCTTTTCATATTATTTAAGGAATTGTCCAGACAAAGTATAGTTTAAATAAAAAGGGAAATC TTTTAAAAACTGTTTAAGGATTGTAATTTAAATAGAATAACTAACAAATTGAACTTTTAACTACTTTCTA GCACTGATCGAATCAAAGATTTTCTTTCAGACAGAAATAACAGATTAATCTTAAAGCGATATGAATAACA GGGCATGTATTGAAAGTAATAATATTAATTTTTATCTCCATGCTTTGGAACATCCCTGTTTACAAGTCTG CTAAAGAAAAAACAAGCATCATTTAGAAGGTAATGTTTTACTTTCATTTAATTTGAAATGAAAAATGTAT TATTATCCTCAAAAGGTCCAAGTAATACACATGTCATCATGTAACCTCGTGTACAGAGTGTCGGTAGCCT TCAAGATGTTGACCTTGTATTAGATAGATTAAAGCAAAGCCCATATTAACCTTCTTTGCAATCTAATGTA TTCTTCTTGACCTGTATTTTTTGCTAAACCTATTTCTTTCTTGCCAAAGCATTAAAAAGTTATGAAGTAG AGTCTTTGAATATTGTGAATACTCTGTAAATGTACTTGTTTTGTGAGGTATAAATAAATGGCTGTGCAAG AGACTTTGTTTGTTTTGTTCTACATTTGTACGAAGAAGTAGATGATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds