Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110649.1 TSA: Strongylocentrotus purpuratus WHL22.248883.0 mRNA sequence TGGGAACTTTGATGAGGTGGAACATGCTGGAAGATACTTTGAACCAGCCAACTACTTCCCTGAATGGGTG ATCAAAAGGAGAGGGGAGAATTACATCGTCAAACACGTCCCCTCGATGCATAGAGACCAGAAAGGCACCA CACCAGCCCTAGCTCAGAAAGCATTCATACGAGAAGCAGCTTCTACACCAGAACATAACATGCACTTCTA CAGACTCAAGAAGACCAAGACAGAACAAACTCCATCGATATGGCTTGGTGTGTGTACCAAAGGCATCCAT TTATATGAGGATTCCTCCGATGGAAAGTACCTTCTGTGTGAGTACCCGTGGGTTGATATCAAGAGGCTCA TATTCCAGAAAAAGAAGTTTGAGCTTCTCGTGGAGGGAGTGTCAGATGGACGAAAGATCACATACTATAC ATGCACTGAAGCAAAGTCCAAACATCTTTTGAGGCTGTGTAAGCTAACCCATGCATTCCAGATGCAAACA CAAACATTGGTAGATAGAGCACGTATCAGAGAAAGTGCATCAGAGAAGAAACGCTATCGTGAGTCTTACA TCAGTGGTGATATCTCCTGGTCAGATCTAGACAGCTCCATGACAACCACATCTCATAGCGAGATGTCGAC CACCAAGGTGGACCAGAGGATGTCTGTCATCAGCAACGTGAGCTCCGTAGCGACCTCTGGCATTGTGTCA GACGAGAGGTCACCGGTAGAGAAGACAATGAGTGAAGATGATGACCTGTGTTCCCCATACAAAGTAATTG AGATGCCTCCATCAGCAATGACCTATATCCCACAACTCGAATCCCACCTAACTCTACAACCTTCTACTTC AAGAGAGGATATGCTGCTATACTCTGATGGTGGCTCCAAGCGTCATTCGGCGGCCATGTCTGATGCGTCC AGTCACAGAGAACACAATGCAACTCATTCATCTTCCTCCAGTGAGCGGGGCAAACCAGGGATGATACATC ACGAGGCTTCTGCTATGCTGAGTGAATCAGAATGGGCATCTGATGATGAGGCCGAAGATGACGATGAAGA TGAGAGGAGATACCACAAGAAGCACAGTCGATCCAACAACCATCATCAACTCATCGACACAAGGAAAATC AGAGCAGAAATTGCTGATAAGGATGTAACTGCTCCCTTGCTGAGTGCCCTATGCAATGATCGCTCACTCC TGATGATGCAACAGCAGAAACAAAGCAATACAACTCTTGAAGACAATTCATTGGGAAGCAATGACTTGAG TCGAACGTCCAGTAGTCGCGGGTCTGGCTCCGTCCACGAGAAGAGCTACCACGAAGATTTGAACACGTCC TTGACCACGCTCGTGAGTCACAGCTCAATAGACTCAGACATGCATAGCTCTGTCTTGGAGAGACTCAATG CAAAGTCCTGCTCCATGATTAATACAATGAACTCCTTGGGCTACTCACAAGGAAATCTCTCCAAACATCA GACATTATCAACCTTGAACAATCTAGCAGACATGGACATCACGCTCATGGACAATACGCCTTTCACGGAC AATACACCTTTCGATGTCAGGTTAAGCTTTGACTCGGCCAGTGAAGGCAGGGTCAAATGTCAAACGCTGC CATCCAAGATGAATGCCAGTGAGCAGATGCTGCTTCTTGGTGCGAGCGTCAACTCAGTCCAACGTGACGA AACTGTTTCTTACTCTGCCCCTAATCTTTCACCCGGTGCTCAAGTTCCTATTGCCAGTCATTGAGGAAAG GTCATTGAACTTTCAATGAGGACATACATATATATATATATATATATCTCCACTGAGGACCTTTTTTTAA CTGAACAGAGGTCAGTGACCTTCCATCAAAACTGTTGTTTAATAGGTTTGTAAGATTTTCCTACAAACTT GCTGCATTTACAATCGGAAATCCTATATTGAGGCTGTCTTGTATTCATACAGAACAATGCAAATACACAT CTGGGTATTATGATATTTGCGCAAATTTTAACTCAGCTCATTTTTTTGCTTTTTATATTTTTATTTGTTT TTATGTTTTTTGTCATATGTGATATAAGGTTTACTTTATCATTAAACTAATATCACTGAAAACTCATTCA TGTTAATTTTAGAGATATGACAGAATTTAGATTTAAGAATTTAACCAACTCAAAAGAAGTATTATTCTTG TAAAGTCACTCTGATGTTAAATATTTAACTAACATGCAGTATTTTGTCACCCTGTATTGTGTACACAATT TGAATTTTTAATAATAGAATTTTTGATTTACAATTTGTTTCATTTAGTGTGCATTGCAACACTTGTTATT TGATAATGATAATGTGATTTTATTGTATTGTTATTTGTGATTTTGTATTGTCTTTTATGTAATTCAGTTC ATATATGTTTTTAAAGCCATTTTGAGTTCATTTGTGAATTTTGTCACTGAAAATACACAATTCTCAGTAT TTCAGTGTACTTTTTCCTTTGTTGCATATTGTTAAGGATTTTGAGATTATTTATTTATCTTAACAAATAT GTGGGTAATTATACATTTGAAAGGCCACCAGAAACGATTCAAGACTTTATTTTGGTCGTGCTAGTGCTAC GCCACTGTCTGTTTGGCAGATGGAATCGACTAAATTCCAAGAAAGATGCAAGACATTTTCAAATTGTTTG ATATGATCTGTAGTTTTAACCATGCTGATAATGACTGAGGTCACAATGCTTCGTTAAAGCTTGCAATGTT TTTCATTCAAGAGACAAGAAAAAGAAACCATTTACTAACATAACTAGAGAAACTTCTTATACATCGAAAA CAACAAGTCTTCATGGCGAATGATTTCTCTACTGCCTGTATAGCATTTTATCTTAAAAGACCATTCTGTT TTTAAATTTAGGTTTTTATTTGCTTACTTTGTTTTGCACAAGTTATCTTTTTTTCCCCCTCTTTTTTAAA CTTCATGTACAATAGGTTCAAAATGCAGAATGTACAGGTTTTTTGTTTTATCAGTATTCACTATTGGTTT TAGACGTTACGTTTATTTATATGAGTTTGATATCAGAAATATTGCAATTGCAATGATGTATACAAACAGA CTATTTACAATGTGAATGTTCATGAATGCAAAGCTTTTTATTCAAAAGATTCCCAAAATTTGGATTTATA GTCTGGTAGGGTGAATCTTCACTTTCAAGAAATCTTTGAAAGCTTTACACTCAAATAATAGAATGAGTTG TATGAATATTATATGCAGTATGTACTTTTGAAACTTTATGCACAAAAAGAAGAGACAAAATTATATAACC TCTGACAGTATTGGAAACAAAATATGAATACTGTGAAGTAAACATTTCAGAGTACAGAACAATGACGAGG GGACCTGTTGCATTAAATCTAAGTCACGCTTAATGAAATTGTTTTTTTCCCACACATCTTTTCAAATAGG TGTATGATTTGGGATTAACTTTAACTAGACTAATGATGGTTTTATGCAATGGGTCAGCCAACTCATGATG ATCAGAATCAGGAATTCATGCAGTCAGTATTCACATAGAAATTATAATGCAAAGTATGATAGTTATATGA TATCATCATGATGCTCGATTGTTATATTTATGGAGTGTGTAAGAGGGTTTAAATTCAACTGTGACAGTGT CTCAGTTCAAGATGACATGTAAAGAGACATGCCTGAAGGTGCGTTCACATATGACAGAGTACACCACAAC AGATATCATTTTGTTTACATGTAAATGGATGGTCGCTAGGATGAGAAAAATTACTGCACATGGCAAAGTT TCTGCATATACTCACTTATCTGTGTGTTATAAGGTACAGAAATGTGAAGAGCATCATGCTTGTGTCAATT TATCTTGCCCTGGCGGTTTTATGGGGCATATGAGAATGAGCCTTGAACTTATCATCTGTATATAGAGAGA AAGAGAGAGGGAGAGAGCCATGAGATAATACCTTCATACTAGCTAGTGCTGGAAAGGTGCTAATTTCAAA GAAAAGATTCTAGTGTCCGATGTGTTCTTGCATTATGTTTATGGAGTGATAGTGGTACTCAAACTACATG TACCGGTACTACTTGACTTTTAACAATTCAGCTAAAATTTGAACCATATGTTCCAGTAGGAATATATAAG AAAAAGCCCACCAAACTTTACCTCTTTGTCTCTTTCCTCCCCTTCAAGTCAGAATTGATGTTTGATGTTT CATTTAGATCCTAAAGATATTTTTGATATTCAAGATACAAAGAGTTATGCTGCATCATGATGCCCCTTTA CCAATAACAAAAATACAATGAGTACAATGAACCTCATGTATTTATATTTAAGGCAAACATGTGCCCTGTC TTTTAAGACTAGCCCATGGTCCGAGTACAATTCTTAAATCAACCATGTATTGGTGAAAGGGTTTTGAAAA TTGAAATTCATTTACCTCTTGATTATGTCTCTTTCAGGAGTCATGAAATTAATGCTGCATTGATTTCTGC AATGCGATCATTGCAGGAAGCGTTTTTGATGTATCTTTTGTAATCGTCCCTTGAATGATGCCTTTGTAAT TTATATGACAACATCATATCTTTATACTCGGATATTAAGCCCAGATGATTGTATATTTATTGATTGATCT CATAAAACTTTCAGACCATTTCAGCATTTTTGTGGGGTGAAAAATTATTTGAGGTATTTTCATTTTGAGG CTATGGAGTTCATAAAGGATATCTTTTGATATCCTATTCTCAGGTATCTAACTCATTTAGCTTTGAAATC ATGTCATTATTTACTTTTTTCTTTCTTAAAATGTTTGAAAGCTATGCAACGGTGTTCTGATGGTGAAAGC ATATATTGAGTCAAGCATACATCGTTTTTGACAAAGGGTGCCTGTTTTTTAACAAACACAAGAAAGAATT TTTGACATTAATTACAAAGAAATTGGATTAAATGTAAAACAAACCTGCAGATAAAAATATTGATATTGAA TTAAAAACATTTATTCCATGTACAAAAAAAAAAATTCTTGATAGGGTATGAAACATAGACTCAGTTTGTG TGTAACTTTCCATTCCATTTCCCATGAATTCTGTTTTTCATATATTTCTCAAAGCAAGTGTAGTGGCATA CGATTTAGTGCTTATCAGTGAAATTATGTCAGTAATCCATGTTTTGATGAATTAATTTCCAAAATGATAG TTGGCATTGACATGTGCCTAAACTATTTCAGTCCTTACAGTGTAGTTATCACCTTGAATATTTATACTGA TAATTATATGTTGTCAAAAATATGAATCAAATAAGTTGAATTAGGATTCAAAGTTTTAAATTTAATTTAA GTTTCCCCATTTTATATTCATGTTACTCAACTTCGGTCACTATTTTTATAAATACATATATATATATATA TAATTTTGATTACACAAAAATTTTGACTCTAGTTACATGATTTTTTAATATTTTGTATTCTAATGATGTT AAATCAAACGCCTTTTTATACATTTTGACAGCTCAAATCTGAGAAAGCTTATATTATTGATTTTGGTATG ATTTTCACAATGATGTAATATTCTAAGTACCAGAATGGAAACACCCCCTACGTTGTAATGATTTTGTTTG CTGCTCAGATGATCAGGGAGTTGCAGTGAAGCTTCTCGTGAAATAAAACCATTTGTTGTGTTTTTATTCA TGTGTAATTAAGAATGTTAAAGTAGTCGGTAAAACTACTGGTATTTAAAATAAGTTAACAGGCCATATAA GTAAACGTTGGCTTATACCAGCTTTTATAGACAAAAATAAATTGTACAATTAACAATTAACTGTGATTTG AATTGAACAAAGCAGGCTTCTGGTAACAATATTGTGACAGCAGTACTTAAATTGACATGCAGTGTACAAA GTAAAGAAAAGAACATATACAGGGTGTCTTATAAATGCATTGGAGTAATCTTTTCATATAAAACTAAGTA AAAGTATTATTGTATTTAACAATGCATTTTGTTATCCATAAATATTTGGTTTCTTGACAGAAAACTTGTG TATTATAGTTTGAAATTAATTATCAAATCTGGCACAATTATATTACGCTCAATATTAATATCCCATTTAA ATTAATATTTTTAAAGGATTTGAAAATTATCTTGAAATCATAGTCTGCAAAATCTCATCTCAGGTTTTTA AAATAGTTCTTTTTTAAAGAGTTTGAGTAGGAAAAAAAGTAATTTAGCTTGTATTTTCAAGATAATCTAT GTTCCTTATACCAAATGTCGCTGAATAATAACTTGTTTTTAGTTGTAGTCTTAAATAATACTTTTTTTAT CAGAAAGAATTGTATATGTTCCTGCCAATAACATATAGACATGATGAGCAGAGTTTAAAAATTGATTCCA TTATTTTTCATGCATGCCAGGAAGATCATTATTTGTAGAAAGATTTGGCGGATAATGATCCATTTTCTAC CAGAAATTATTTGTTGTCTGAGTATTTATGTTTTCGTTATTGTTGTATGTATTATGTCCATGTATTTGTT TCTGTTTTGATTTTAACTGATTATCATCTATTATTGTATTCCTATATAGTTTAAAAAGTATGATTCCATT GTCTAACTAATTCTTATGATAACAATTGTATTGTAATGCTTCTTAAGCATAATATGTATGTTTAAGAGAA TTAAATTGATTACCCAAATAAAAATATGAATGCATATTATGTAAAAACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds