Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT095675.1 TSA: Strongylocentrotus purpuratus WHL22.176403.0 mRNA sequence CACACACACACACAATATCAACGGCACGCACGAAGATTTTCATCTTCTTCAGGTCAAAACTGCAGTTAGT TCTAAGGCAGATATTACTTTTAAAGATTTCGTTTGACGAAATCTCCATTACAGTACTAGGGCCTATACAC CTTGAAAATGCCTGGAAACAATGAAAACAAAGTCCGAAAACGGGTGAAACAGGAGGAAAACGCTGGGGAA CTTCGAGTGAGTGGGGATCAGCAGACCAAAGATGAATCGTCCCCGGCAGTTACGGCTGAAAGTCTTACAG GTGTAGGGAAGTGGGGAAATTTAGTAGCGTCACCATCGTCATTCGTTTTCACATTGAATATCAATGCTTT GATTGCAGTTCTTACGTTCGTGTCTTTTGTTACACGATTTTGGAGGCTAGAAGAACCGAGGGGAGTTGTG TTTGACGAGACTCATTTTGGTCTGTTCACAAGCTTCTACCTCAAAGGGATGTTCTTCTTTGATGTGCACC CGCCCCTAGGCAAGCTACTCATAGCCTCTGTGGGCTACTTGGCGGGCTTTCAAGGAGACTTCTCTTTTGA AAAGATTGGTCAAGAATACCCATGCGAAGTTCCGATATGGCACTTGCGCTTCCTACCAGCCCTCTGTGGG TCTCTGCTTACCCCTCTCACATTCTACATCTTGGAAGGTATGGGATTCAGCCAATGGACAGCAGCTGTAG GAGCTTTCCTTGTTGTGTGTGATAATTCTTTGTTGACTCAGTCTCGATTCATCTTGTTGGATACCATATT GCTGTGTTTCATCCTGCTGTCTTTTCTAGCTCTTCTGAGATTCAGACAAGTACAGGATAAGCCATTTAGT ATTCAGTGGTGGATATGGCTAACATGCTTGGGAGTCTTCCTCTCATGTACTATAAGTGTGAAGTATTCTG GTTTGTTTACATCAGTTGTCATCCTTGGTGTTATTACAGCTGATTACTGGACTATGGTTGGTGACAGAGG CGTCTCAAATTCCCACCTATTCAAAGAGATGTTAGCAAGAGCAGTTCTACTCATCATTGTGCCTGTGGTG CTATACCTATCCTTCTTCTACATCCACCTGACTGTGTTGTATCGGAGTGGTCCTCATGATGGACGGATGT CCAGTGCATTCCAAGCCTCCTTGGAAGGAGGCTTAGCAAAGGTCACTCAGGGTCAACCAAAGAACATAGC CTATGGTTCACAGATCACTCTCCGGCATACACACAGCACTGTTTGCTGGCTCCACTCTCATCCCCATCTT TACCCATTGAGATACTCGGAAAGAAGGGGGAGCAGCATACAGCAGCAGGTCACATGCTATACATTCAAGG ATGTTAATAATTGGTGGGTAGTGAAAGACCCTGAGGAAGAAGGATTCACGACGGAGAATCCTCAGAGACC CGTCAAAGATGGTGACATCATCCAGTTGATTCATGGGACCTCGGGTCGGCGACTTAACAGTCATGATGTA GGTGCTCCAATGTCACCTCAATACATGGAGGTATCATGTTACATTGATTACAACATCTCCTTTCCTGCTC AAGACTTATGGAGAGTGGAAATAGTGAACAAGGATGTCCAAGGTAATTTATGGAAAGCGATCCATTCACA CATCAGACTGACTCATGTCAATACATCACAAGCTATGAAGTTGACCGGTCAACAGCTCCCGGATTGGGGT TTCTACCAGCATGAAGTTGCTACAGATCGTGTCATGAATCAGGACTCCAACATCTGGAATGTGGAGGAAA ATAAACATTCAAGTGACAAAGAAGATGACTTCTGGGATGATACAAAGGAGCTAAGTTTCTTCAGTAAATT CTGGGAATTACAGTGGAAGATGCTGGAAGCAAATAGGAATCTGCTAGAGGATCACAAGTACCAATCGGAC CCGATGGGATGGCCCTTCATGGAACGCGGTATTGCCTACTGGATGAAGTCAACCACAAATGCTCAGATTC ATCTCCTTGGTAACGTGATCACATGGTGGTCAGCTAATCTAGGGATTGTTGTTTATCTGGTCGTCATGGT CATCTACATCATACGACATCAGAGAGCTTGCAATGATCTCACAAAAGATGAATGGATTCGTCTTTTCATG ACAGGCGCCCTCTTCCTGTCATGGTTTGTCAACTATTTTCCATACTTTATGATGGAGCGTACCCTCTTTC TACACCACTACCTGCCAGCATTTCTCTCAAAGATCCTACTTTTGGCTGCTACAATTGAGATAGTTTACTT CCATGTCTTGCAGACTTCTGCTCAGCGTAGTCTCTTCACCAGCCTTCTGGTTGTTTGGCTGACATCCATC TTCGTAGTCTTCAAAAGCTTCTTGCCGATGTGTTATGGAAACAAGGACTTCACTGAAGAGGAGGTGGAAT CTCTGCGATGGATGGAGAGCTGGGGGTTCCTTGTGCAAGGAAAGATGATCGCATAAGATGATTGCATAAG ATGATCGCATAAGATGGTCGCATAAGATGATCACATAAGATGATCGCATAAGATGATTACATAAGATGAT TGCATAAGATGATCGCATTAGATGATTGCATAAGATGATCGCATAAGATGATCGCATCAGATGATTGCAT AAGATGATTGCATAAGATGATCGCATAAGATGATTGCATGAGAGGATTGCATAAGATGAGGGTAGGGAGA GAGATAACGTCTCTGATGAACTATCATTATAAAGAACATTGTCTTGTCAATCTCATTATAACTATGTCAT CTTGCTGATCCGACTTACCGTATTTGAATAGTTCTGTCTCTGAGCCCTAATAGGATTATATTTCAGTGTA TCCATTTAATATCTTTGAGTAAAAGCTGTGTGTAAAAATAATGAGGTTCAACTGTAGTACTGCAGCCCAT TTCACAAACCCTTTTTCAATGACAAATGACAAAAATCAGTGACTAATCTGTTGATAACCAATCAGAAACA AGGATATCAGTAGCTTATAACAAAAACTGTCATTTGTCACTGATGACAAGTTTTGTGAAACGCCCCCCTG GTGCATTGGAAGAGGATTGCTTGAGATAAGGGTTGGAGTAGATAAGGTAGATGGAGAGCTTCTTTTCTGT GCAAGAGATTCAAAGTGTTTGCATAAGGGCGAGATCAAGCTGACTAACAACTCAAATTATAGATTAATTT TAAGCGATGATTAAATGATAGCCCAACGAGATTGCAGACATGCTTATCATCAAGTAAAATGTGCTTACGA CCTGTTCTTCCGGTATGTGCGGTAAGGCATGGAACTCAATTGATAATAGTGATGGACTAATTTAAAAGAT TAGGTGAAAGGATTGTTTAAGGTGGATTGAAGAGAGTTTGCAGTTAGCCTGAGGTTGGGTGTCTAGATGG TAACATTATGGATTGTAATTGTATTTGACTGCTAGACTTTGTCTCAGTTTTATTTTATTTTAAAGATGTA TATTTATATGATGCCAACGGTCTTTCATTGTGTATATTATGTAAACTGGCAACTTGGCTGCAGCACTTAT GTTGTTTTTGGGGCCATTTATCACCTTATACAATTATCTTGAGTATCTTTGTCTTCTGAATCTGCAGAAT ATGTAACAGTTGATTGGTTTGTTTGTTGTGCTGCTAAGAAAGCATGTGTATGCTTGTAAGTAAGCAACTA GGGGACAGACGGCTTCAAGTCCAGTCTACTTGGTAACGCCAAAGGGCACTAGCGCATTGAATTCGTTTTG AACCAAGACTTCTCGGTGAAGAGACCACTGTTCATGCACTGAGCCATAGCACCTCACTTGATTTGCTTTT GGGTGTAGATTTAGATACAGATCAGTCTGCTATGTCATGTATCTACTGTAGGATAATAAGATATGTAGTA TTCGCTTATTGTGTATTCAGTCGAATCAAAATCATCATTGTTCTTTTTAGATGTTCATATTAAACCATAA AGTAATGTGTTAAGTATATTTTCCTTATATGAATACATCAAACAGTTTCAGTACTAGGCCAATTTTTGCC AATTTCATCAACTCATTTTTTTTGTTCCAACATGTTGGATCCTACTTCAAATAATGCATGGAGATTATGT TGTTGGTTTTCACATCAAGTATAAAATGGGGTTTTATATCACTGAAAGGAATACTTATTAATGATAATCA TGAAGGATGAAATATTATATTCCCCATTTTCCTTAGTTTTATCTTTACCCAAGTAAAATTTTATTGAATC AATAGTCACTTTTAAGAACGAAATTCAATTTGACAGAGCTATAATAAGTCTCATGTACTATCATTGTATT ATTTATGGGAGTAAGTACTCCATCGGTTTGTTTAAGTCTTTAAGCCAGAATATCTTATTTTTGCTATGTA TATATTAAGTACTGTTTTGAACTTTTGTATATTTTGAACAGCATATATTTTACAAAGGAAGTAAAAGTAG TATATTTGAATGCAAATTTACTATGGTAATTTTGGTGGATAGGATATAAATTTAACAGATCGATGTGTTT GAAAAGGTGCTAAAAAGCATGTACAGTGTGAAAAAGTGAGATGAAAACAATCCAGTAGCAATAGCATGTA GGGGGCAGAGTTGTTAGACGTTTGTAGAGCGAGTAATTTCAAAGAGGTAAGTTTCAAATAAGAGTCATAA GTGCCTTCTTCACCACAAGAGAGTACCGGTAATAATTTTGACATTTAATTTTTGTAGATATGTCCTGAAG GGTTGAAGAATGTTGGCACCTGACTTATAAAATCAAGAGGATTAGTCTAACAGCAGAGATGCCAACCAGT ACGATTAAATCGTCTTTAGTACGATAATAAGAGTGAAATGCGATCTTAAAATATGATTTTTCATCTTTTT TAACCCATAAAAAAAGCGGAATCGCATAAAAATATGGACAAGTAAACCCCCGCAACCCCAACAAAAACTT TGCTTTACAATTTTCTAATTAAATTTTAATAAAAGAGCAAACATTTTTCTGAAATTTTACTGGCCCGGGG CCGACGGGCCAGTGGTAGTGTCGAGTTTTCGTCAAAATCTGATTTTTTTTTTTTTAAAGGATATACTCAG TCTTTTTTTGTGTGTCAAGAGGTTGGCATCTCTGTAACAGTGAATACACTGTTTCAATGTTATACATATC TCTGTGACAAAAGCTGTAATTAACATCTTCTGGAGCTTGTCAAAGGTTGCCCTTTTTAGCAACAACTACA TCATGGTGTGAAGAGAATAAGACTTGTGGTATGCTATGTTAAGACACTATTGATATTGTATCCACTTCTC ATATCAAAGAGAGATGATGTAACTTGTGTGTATATTCAGGTTTATGACAATTACATATTAATTATGTCAT ACATTTATGTATGTTCTTTGTTACCAGGGTTGTGTCGCAATTGTATTACGTTATATATGGTGTGTAACTG GTGTCTTCTGAAGAGTTGCAAATTTCCAGTACATTGATATACTCTCATTGCAAGGAAATTAACAAATTCC AATAAATAATGAAAAGTATGATGCTGGTCAAACGTCACAGTAGTCTGAGTTTGAGCGTGAGTATGAGTTC GTTGGATTACCACTGAAAAGGAAGCGCCTTATAATAATAATAGCTCACATTTATATTGAGCCTAATACTT TGTTTCTTGGCACAGTACGTATTATTACCCCGGTCATCAGATTCAGGCTTACCCACACACAATGTATGCA TATTCTCAACTCCCTGGGGAGCATTCCGGCCAGTCGCCCTTTTACAAGCGCCACTTGCTAATCCAACCAC ATTATCTTTTGCATCCTACCGGATACCCATTTAACACCTGGGTAGAGAGTGGCAAATGTAGATGAACGTC TTGCCAAAGGACATTAGTGCTGTGTCTGGGATCGAACCATGACCTGCAAATTTCAAGTCGAGTGCTTAAA CCACTTGACTACGACACTTCTACTATGGCCATATAAGGTGAAGGGAAAAGATGATAGGGGACAAATATAA GCATCCACTGGTCAGACAATTCCAAGCAGAATCACAGTTTTCGGACATGTAATAAGCTCTCGGTCAATAC AACATAGTTGTTGCAGAGGATCGAGAAACCTTGATATTCCGGGTCCCATGGTTCCACATTTTTAAACACC AACAAGAAGTAGGTATTTAGGATTAAGAATCTGAACTGGAACTGAGGAACAGGACGGAACCATTAGGCTG AACTATCCAGTGACGGGGGCCGACGTCAGACAAGTCTTTGTCAGGACACTCCAGAAGGAGAAAATCAAAC TCAAGTAATGGCTAAGGATCTATGTTAATCATTGAATTGTGTCTATCTTATGTTCAATTTCCTTATGTTT GTAATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds