Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GQ979611.1 Strongylocentrotus purpuratus Tie-like receptor tyrosine kinase (TIE1/2) mRNA, complete cds ATAGACAGCCTGTCGTTCATACCCGGGATCCATTACTAAAAAGCTATATTCGGAGACATTTTATTGGATA TTAGACGAGTGCATCACACCACCAATTGGTGGATTAATACACTATTGAGTTTCACCTGACCGCGTCACGT TACAGCTGATGCTGTGTCAAACTCGCGACGCTTCAGAACTTTTCTCATGGGACTGTTTTAAAATCGCAGA GAATTGTTTTACTAAATCTTGTGTTTGTCAGAGTGTTTGCAAATGTCTTATTGACAGTTAAATCATACGA ATGATAGTGGACGATTGTGTTTTTGTGAGTATCGGGAATCAATTCGATATATTTACGTCAGATTTGTATG GAATAAAGACATCTTCTCATCGGTTTGGATAAGCATTTTATTCCTTGTTTGGACTATGATCACGATGGGT TGGATACGTGGACCGTGTCTTCTTCTCTTCGCTTTGATAATTGCCCAGTACTCTCGAACAAATGGAGAAG AAATCGTCATTATCAACTCCACGCCGCTAGTGACGGGTGCCGTCACCCGGTTGGTGTGCCTCGATGCGAG CGGGCAGCTAAGCGCAGATGAGCTGTCTGTTCAGAAGGTGTTGCCGGCGGACGAAGGGCTACCCGTCCCT GCCGCTCCTTCCCTGGTCGACCCGGGTCATCTGGTGGCGGACTGGAACGCCAGCTGGGCAGATAGCCGAT ATGGGGTCTACTCCTGCCACGGTCTCGACGAGGCTCATAAAGTTATGACGGTGAAGATCAACAGAGATGC CCGGATCAAACCAGAACACTTCACCATGACGGCCAGCCCTGGTGATAACATAACCATTACCATGCAGATA ACCACCCGAACCCGCACCCCTGATTACCTCATCTGGGCACACGACGAACTACCACTCCCCTATAACGCAA CCCGCTTCGGATTCTACGACAGGTACAGTATACCAGCGGTGGGGCAGGAAGATGCGGGCATCTACCAGGC GTACCCACCCGATGACCACACCCAAGGCGGCTACATGAGACTCATTGTCAGGGGTTGCCCTGCTGAACGT TGGGGCACTGGATGCACCAACGAATGCCCGACATGTAGTAACGGAGGAGAGTGCGATGACGTCACAGGGG TGTGTGTTTGCCCCCCTGGGTTCCACGGTGATACCTGTGAAATCGGTTGTGGCGCGAACCAGTATGGACC CAGCTGCGAATTTGAGTGCACAGCTGACTCATGTCAGTACATGCAGTTCTGCCTGCCCGACCCTTACGGG TGCTCTTGTGCTACCGGCCTTGCTGGCCTCGCCTGCGATGAAGCTTGCCCGGATGGTCATTACGGTGCGG GATGTCTCCAGACATGTCACTGTGAAAATGGGGGAATATGCGACCGTTACGTCGGGTGCAGGTGTGTTGG CAACTGGACCGGACCCACATGTGAAATAAAAAACTGCCCGGATGGCACCATTTATGGCTCTCTCTGCGCA GACTCCGGAGAGTGCCAAAATGGCGGGACGTGTGACCCTTGTCTTGGTTGCCTTTGTACCGAGGATTTGG CGGGCCCAACTTGCCAAGAAAAAGCATTCTATTTCACCACATCCCATGATGTAGCAACGGTAGATGAAAC CCGAGTACAGCTGATATGCGGTTGCACGTCTGCGGTTCCCGCCAATCAATGTCCTGCATTTGAAATCGAG CGATTCAATCCATCCAATATGATTGGTATGGGGGAAGATTATTCCTTTCCTACAAGCACGAGCCTGGGAT TGTCCTTTACCCCTGTCGGTTCGATTGGTAACTGGAACTTCCGGTGTCGTCCCGTTGACTTCCGGGGTCA AGATACATCCCTAACCCTGAAGGTGAACGTTACAGGTGATCCACCACGGATAATGGAGTTCCGGTTAGCG GAAGTCGTCAACCTCGACCAGAGAGCGAAATTCCATTGTAGGGTGGAAGGATTATCCTACCAAGACGTGA ACGTAACACTGGTAACCCCTTCAAAACATGTGATAGAATCCGGTGAACCCGTCGGGCCTACGAGCTCCCC GACCTTTCTATTCTCCATCCCTGGGGTGACGAAGGGAGATGAAGGCACCTATCACTGCATAGCGGATGGA ATAACGGGATCAGACCAGCAAGAGTGCAGCCTCGAGGTCTTCATTCAACCCGTGCCCGTGAATAGCCCTA TCATAGTGGACACCAACTCTCGCGCTGTGGAGATCAACCTCAACATCGACGAATACACCGGCGACGGACC CATCCAGGGTGTCGAGCTCCAGTATACACGAGCCGGCGGCGATGCTTGGACACCCATGACGGTTCCCATC AATGAGGCGTCATCCGCCGTCGTGCCTAATCTCGTCCACAATCAAGATTACGAGGTCCGTGTGGTCATAT GGCGACGAGGATCTGGTGGGCGAGGAACCACGGTCCCCACGACATCACTCACGACCACGTGTTCGAGTCC AACGACTGAATTTTGGTTGAGACTGACGACGCCTATCGAAGAATGGTCATCAATCGAATTAATTTGGTCG CAAATGCGTGATATCGTGGACGAGCTGAGCGGTTTTCGGATTGAATACCGGAAGACAGGAGGTAGTACCA TGACGGTTGAGATCCCCGACGCGGGTACTCGGACTCACAAACTCACCGGTTTACCTGCAAATACCCATTA CACGGTCATTGTGACACCCTTCAGCTGTGGCGGTGACTCCGTATCGGTGCAGTCGAGCGCCACAACCAGA CAAGGACCTCCTGGGCCCGTGGGTAACTTGCAGCTGATCGTGAAGTCATCGGACAGGATAACGGCTAGTT GGCGTATCCCTGAGGAGACGAGAGGCGTCATCCAGTCCTACTCTATCAGAGTCTTTGAGAAGGTTGATGG TGTCGTCAGTGACACAGCGCTGTTAGACCGCAGATCTGACAATACAGTGTTTCAGATCTTTGACCTGAAG CCTTACACGTCGTATGTAGTCGAGGTCTATGCAACTACCAAATATCCACCAGAAGGCGAAATTAGCCGGA AAGAAGTCACCACAAAGGAAACAGCTCCTAGTGGACCGCCCTCTACGCCATCGGTTATCGGTCAGACCAT GGACACCAGAATGTCTTTTGCGTGGCGCCCGCCTCCGGTGGACCAGCGGAACGGTGTGATCATCGTCTAC GAGTGGAATGTCATGTACGTGACGACCGGTGACGTATACCAGAGCGACGTTGAGAACGTGACGGAGACGT TGGCGACATTGACGAACCTGATCCCGAATAGGAGATACACCTTCAAGGTCCGAGCCTTCACGTTGGAAGG ACCGGGACCCTTCACGCCATCGATCAGCCACAAAACACTCACTACAGAAGAAGCAGCCAAGTACCTCACC ACACCACCTATTGCAATCACTGCGAGGGGAAATCCAGACCTGCCCAACGAAACAGGTGGTCGAACGGGAC CTTCAATTAGTGAGAACAAGGCCAGTGGTGGAATATCAAGCAACACCGTGCTCGCCCTCGGCCTCGTTTG TGTCTCAATCATCATCATCGTCGCTATCGTCTTCGGAGGCTGGATGTACAAGAAGAGGAAGACGGCAGGG AGTGTGGAGTTCGTTGCGAGCATCGCCGGATCGGAGATCGGTACTTACCGGTTTAATGAAATGTGGCCCG ACAGCAGTCCGCTCAGTCCGCTACAAATGACTACGACGAAAAATAGCCGTGGACTGATGTTGGGTGCCAT GGCGTCACCCCCTGGATCACCTCTGCCGCCGATAGACTACTGGAGAATCCCGCTCGACTGCCTAACGCTC GAGAACTTCGTCATCGCTGAAGGTAACTTTGGCCAAGTGATGAAAGCGACGGTGAAGAAGGACGGAGGCG TCATCGAAGTCGCCGTCAAGACGCTGAAAGATGGGACATCTGAAGCAGATCGCAAAGACTTTATGGGAGA ACTTGAGATTATGTGTAAAGTAGGAACACACCCCAACATTGTGAACCTGGTAGGGGCATGTGAACACCAA GGTATCCTTTATGTTGCGACTGAGTATGCTCGATATGGCAACCTACTCAATTTCCTACGATCCAGTCGTA CTATTGAGGCCGATTCGCCGTTCCCTTCGAGTCCGACTAGTCGCTTTAAAGTCAACGTGTCCACGAGTTT GACAGCGGAGCAAATTCTTGGATTCGCTGCTGACGTAGCCCTGGGCATGCAGCATCTGGCTCAGAAAGGG TGTGTGCATCGTGACTTGGCTGCCCGCAATATCTTGGTCTGTGATAACTACGTTTGCAAAGTTACCGACT TCGGGTTATCAAGGAGTGATGAAGTTTATGTAAAGACCACTGCAGGTCGTTTACCAGTTCGTTGGATGGC CATAGAATCCCTGACCTATAGTGTCTACACTACTAAGAGCGATGTATGGTCGTTTGGAGTTCTTTTGTGG GAGATTTGTACCCTGGGTGGGACACCATACCCTGGCATGACGTGTGCTGAGTTGTACGAGAGGTTGCCCC TAGGGTTCCGCATGGAAAAGCCTCTCAATTGCGAGGATGAGGTGTACAACATCATGCGTCATTGCTGGCG TGATCGACCACATGATCGACCCACGTTCGATCAACTTTACACAGTACTGTCTGGACTAGTCAAGGCAAAA CAGCCCTACGTAAATTTGGACAAACTTGAAAACGATCTTCAGTTCTCCGAGCTCAACTCAGATGAAGACT TCAAACACGATAGCTGGGCTATGTGAAAAACTTCCATGATAAAAAACAATCTTAAGACCCCCCTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds