Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030996501.1 PREDICTED: Strongylocentrotus purpuratus microtubule-associated serine/threonine-protein kinase 1 (LOC590093), transcript variant X1, mRNA TTAAAAGTTCACTTCCATTCTCTGCGATGCTGAGCAGTGAGTGAGGCAGTCTGCTGGTGTGCGACGGTGG CAGTGCAGAGGCGGTGGTGTAGAGTGTCGCTTATCCTTATTATGTTCTGCGGAGGACTGGCATGAACACA CAGTGGATTGAATGGGTGACTGACTGACTGATGTCAGTCAATCGGTTTACAGACTGCATGCATGTTGAGT GGGAGTAGGTTGTATAGGATTAGGTTACATCTATCAGCTGGTAGTTGCTAGCTAGCAGTGGGTTTTCATT CTGTCTGGGAACCCTGGCCCTGCTGAGAACAGGATATTCGTTAACCTTGACTGCAGCCAGGTCTAGTGTT GCTGAGCTGAGATGACTTTGTTTTCATGTGTACTGGGAATGCATTAGAGGCTCGCTGGCTGTTATGGTAT CAGTGTGGTTTACTGTCCATGGTTTTAGGTTACATTATGTTATTGCGACAAGATACGTTTGATTCAAAAT TGAATTTTGAGGACAGTTTGCCAGTTCACATTACACTTTTGGAGAGTGAAGTTTGAAAGTTGTGCCAGTC TCTGTTTTGATATTTTAAAAAATACAATTGTCATTGTCATTTTTGCAACGCAGTTAAACTGGTGGCTTAA ATGCAAAATCTTCTCTAAGTTTGTCGTCTTGGGTGAAAGGCTTGCGTCATCCAAACTAATGAGTTCACCT CTGCTGCCTCCAAAACAAGATGGAACCCCACAAAGTGGGCACAGCTCCATCGTCTTGTGGTGACCTAGTG TCCATGAGGGGCATCCTTTGACAGTAATCAAAGAACACGTAGGCGTGGATCCTAGCTGGCTGTCTTCTTG TTTCTTCTATTCTTCATGTAAATGAGCAGCTGTAGGAGAAATATTCTTTTTATGTCTTTATGACGTCAGT CTGCTCTACTCTGCCAGAAGGTGGTTAGTCCATTGGGAAGGGACTCGACGCCCCTTCCATCAGCCTGCCT GCCAAGTGTCATCTCTGGAATAGGAGGAGAGGATATCTGCATACATGTGTGTGTATTGTGTGTGCATCAT ATTCTGAGGATCTCTGGTATTTCATGGACGTCGACGGTGAAGCTAGCTCGCATCGTACCATGTGTTTCAT ACATTGCATCCTGCTGACTTCGAGACAGACGGACAAAACATGTCATCGCTTGTGCATCTCTTAAATCCAT CTCAGTCTGGCCTGCCTCCTTAATTTGAGGGAAGGCCAGGAACACGCAATTTTATTGACTCGAAAAGAGA GACAGTGCTTCAGGGCTTTTTTATGTTTCGACTTCAGTACAATTGAATTTTGAACAAGATGATGTCCGAT TTGGAATGTGATGTCGTCATGTCTTTGGTCCAGCGGCGACCGCGGGCTCGAGCCCCATGTCATATCAACA TTGTGTCTGATGGTGAGGACTGTGGCAGACTGACCCTCGACTCACTGCATAGCCCCAAACCAAAGAGCGC TGGATTCGCCACATCCTTACCCCGCGGTTTCAAACTAGCCCGCCCCCTCTCCATTGACGAGAGTCGCTAT GTCAGGCGCGGTAGTCTTGGAGCAGCAATGATGGGACCGTTCCACTTGAGCGTAGGAAGTTCCACCGGCT ATCAGTCCAGTACGACCAATGCCTTGACCTTAGGAGGGGATTCTGGTAGCAATCTTACCAGGATGAGGCC GCTGCTAGGACAGTCTGCACCTTCACTGTCAGCTAGTCTGAAGGAGCTGTCACTAGTACGGAGAGGGAGC AGTTATGGACGAACCAGGAAAGGAAAAAACAGTTCCCCGGTGATGAAACGTTCAAATTCTCCTGGTTCTC ATGGCGATGGTATGTATCTACCTGGGAGTCCTTTGGAGAGTCCTCGAGTGCCGATCCACCCTCATGCCCA CTTTGCCTTTAATTCTGTACGTCAGGCTGACGGTAGAAGATGGTCTCTGGCATCCCTGCCGTCATCAGGG TACGGTACGAACACACCCAGTTCAGCTGTATCGTCGTCCTGTTCAAGTCAGGAGCGTCTTCATCAGCTAC CCTACCAGCCCACCCCTGAGGATCTGCAGCTTCTCTCGCAGCATTTCAGTAGCAGTGAGAGTAACGTAGG AGGGGACCAGGAAGATGGCAGGAGATCACCTTCATGTAGACCTCGATCTAGGAGTCTTAGTGGTGCAAGC AGTCCGTTGGTGGGTAGTACGGATCATGAGATGCTACACATGAACAGCCTCTACAAGGAGAGATTCCCCA AGGCAAAACAACAGATGGAAACCAAGCTCACTGACTTTATTAACAAGTATTCAATGGATATGAGCCAGGA AGGGCACGATGCAATCTATGCTTTCCTTGTCCATCAGACGGTAGAACTAGCCCGGGACTGCTTAGAGAAA TCACAAGAAGACCAAGTCTCCCATATCTACTTCACTGAGGTGTCCCACAAGGTCCAAATGCTAGCAGAAG ATGCTGAGAACCGATCTCAAGTCTCTGCCAAGTCATTTACGAGGGTAGTCAGAGACCTACTGATGATACT AGCCAGGCCAGCTAGACTTCTTGAATGCCTGGAATTCGACCCTGAGGAGTTTTTCCAGCTGTTGGAATCT TTCGAGGACCAGGCCAAAGTTGGATCCACTATTTCAGAAGACTTACCAAAGTACATCATCCACCAGCTAG GACTTACCAAAGATCCCTTGGCATATTTTGATCACTTTCCAGACGTGGGCGACCTGTGTGGGGATTCCCC CTCACCGCCACGCCAGGATTCAGGAGAGGATGAAAAGAGTAATGTTGATGGTAGAGACTGCTTTAAGGAA CCAAGAGAAGAAGATTTTGAGAACATCAAAATCATCAGCAATGGAGCATATGGTGCTGTATACTTGGTGC GACATAAGGCATCTCTACAGAGGTTTGCCATGAAGAAGATATGTAAGCAGAACATTGCCCTTCGGAACCA GCGGGAGCAGGTCTTTGCTGAACGTGACATCCTCACGTTTGCGGAGAACCCTTTTGTTGTTGCTCTCTAC TGCAGCTTTGAAACAAAGAAATATTTGTGCATGGTGATGGAGTATGTAGAAGGAGGAGACGTAGCTACTT TGATCAAACATATAGGACCACTTCCTCTAGAAACAGCAAGATTATATTTTGCTGAAGCAGTACTAGCCAT AGAGTATCTACACAGTTATGGAATCGTACACAGGGACATCAAACCAGATAACATGTTAATTACATCGACA GGACACATCAAGCTGACTGACTTTGGTCTGTCCAAGATTGGTATCATGAGCTTAACAACAAACCTGTATG AAGGCAACATCGACCGGGACACCAAACAGTTCCAGGACCAGCAGGTATGCGGCACACCCCAGTACATCGC TCCGGAGGTGATCCTCAGGCAGGGGTACGGCAAACCGGTAGACTGGTGGTCTATGGGCGTGGTCCTCTAT GAGATCCTGGTAGGATGCCCCCCTTTCTTTGGTGAGACTCCGGAAGAACTCTTCGCACAGACGATCAATG TTATGATTGAATGGCCCGACGGTGATGATGCCCTATCGGACGAGGCCATGGAACTGATCAACGGTTTCCT ACAGCAGGACCCTCTCTTCAGACTGGGTACAGGGGGCAGTGAAGACGTCAAGGGACATAGATTCTTTCAA GGGGTTGACTGGAATGGTCTGCTGAGGCAGAAGGCTGACTTCATTCCACAGCTGGAAGGAGAAGACGATA CAAGCTATTTTGATGCGCGCTCAGAGAGATACAACCATGAGCTGGACTCAGACGACGATGAGGACATTCC TGAAATTGGCAACTTCTCCACCTTCTCCCCGCGGTTCAGTCGATCGTGCAGCAGCGTATCACAGTCATCC GATGACACAGAGAGAAGAGAGAGGTCTCATAGTGCTTCGCTACCCCTAGGGGATCTATCCCATCATTCCT TGCCTGCCAGGAACTCTCCGCAGCTCCTGACGGTGGATGTTGACAGGGCTAGTAGCCTCCCAGACAGGGA TATCGCTCGGCTATCGAGACGTTTCTCAGCCAGCTTTGCCACCGATGATCACGGCTCTTTATCCATTTAT CGAAATATTTTGAGAGACAGGACTGCCAATGCCAAGGCCGCTGAGCATTCTGACGCCTCCTCCACCTCCC CCTGCACCCCGCCCCACGACTCCTCCCCTCGGTCCCGCCGTCGGACCGGCATCGCCCACAAGCCACCCCT CCGGGAGGTCCTCCCTCGCTTCTCCATCTCGTTTGACGAGGACAGCCCATTGGCATCGTCGCTGGAGTCT CAGGGTTCTCTGGGGTCGTCAGGGTTCCTAGGTGCAGGAGATGGGAAGCACATCAGCTCCTCCTCTGAGA GACAGAGTAGAACGGTTGTCAAGTCAGCATCGTCTAGTATGCTGTCTCTTATCATACCATCAGATGAGCT TCATGTGCCATCGCCCATCAACTCCCCAGGAGGAGAATCAAGCAGCTCCAGAGACGATTCTCCGTCTAGG GATCCATCCATGAGTAGCATGAAGTCACCCATCGTCATCAAGAAACCACCGCGAAGGAAGACCATGGGAT TCCACATGCAGGCTATCAAGGTCTACCTAGGAGAGTCCAACATATACACACTGCATCATCTAGTTAGGCA TGTTGAGGAAGGAAGTCCTGCGTACGAAGCTGGCTTGCGACCCGGAGACCTCGTCACTCACATCAACAAC GCTCCAGTAGAAGGCTTGATCCATCGTGAGATAGTAGAACTTATCATGAGTGACACACAGGTTGTGATCC ATGCCGTACCCATGGTCAAGACAACCATTCAGACATGTGGACGAAGGAATACAACGTCCAGTAAGATGGC CAGGAGAAAGAAGCCCAAGCGTAAAAGGGACTCCGTAGAGCGAAGGCGGCGCAGTGCAGTATTCAGAAGG TCGAGTTTGAAACGGGCATCGACAGATGGAAGCAGGGCTAGCTTAGCAGCATTAGGCAGGCAGGGAGGGA CGGATACATCTCCTCGGTCGCCGACATCGCGGTCACCACGTTCCCCTCCCATGTTTCACATACCTAGTGA ACATTCAAGCAGCACACCGTTGACATCGTCACCCAACAGTTCTCCATCATCGAGCTGCCCTAACTCACCC GCTGGACACTACACATCATCCAGACCCAGCACACTGCAAGGTCTGGCTCATAAACTACCCTTCTCATTCA GACCTGGAGGGAACCGTAGGAAGTCAGTCGGTCACATCCCACTGTCCCCTCTAGCCAGGACCCCCAACCA GTCACCAGCCCCTAAATCCCCTGTTCGTAGCCCCAGCCCTCTGGCTGTGGTGACCAGTCTTGGGCATTCT CCTGGAAGCTCCAACACCACCCAGTCCTACCCCGCCCACATGCTGAGCAGCCCCACCCTGGCTGCCCCTA TGAAGGTCAAGACCAAGAAGTACATGCGCTCTAGGAACCTTGAGACTCCGCCGTCACCGCTCCTCAGAAG GGCTCTCTCACCAGACCATGAAAAGACCATGGACATGTTTGATGTTCAGCTCAGACCTCGAGCGGACTCA GCTTGTGATGCTCTCTCAAGGGAAGAGAGAAGTCTCAAGAGATTAGGCATCTTCGGCAAAGAGAGGGTCG CTGAGAGAAAATCTACAGGGTCCACTTGAGATCAATCTTGATCATGTGTGTAGAAATGCAAAGTATTCAG TCTGCTATATATGTATATTTGACAGTTTTTGGATATGATGGTCTTTGGTTTCACAGTGTCTGAACGGAAG ACTCTCAAGCACATGCCATGCTGTGTTATGTGAGACAGCTTTAAGATACAACCATGGATGGTTTCGTCTT GGTAATCAAGACCAGATTTATTTTGCTGAAACAAATTGATAAACATAAGAGCATTGCAATTTACCAAAAG TTGATTAGAAAGTACTTTGAGTCATCATTAATTCTTTATTCTTTGCTATTGTGCCTGTATGTTTTGCCAA AGATGCTGAAATAAGAAATAGATAATGATGCTGACATAGCTGGAGTGATAGCATTCATCAACAACCTCAC TAGCTCTTTTTTGGTCCACTTTAGTCCATACTGTAGACTGCCATTTCAGCATATGGTACGCACACACTGT ATGTGTGCCAAAAGTTGACTGTGGTAATTTGAATAGTCGACCAAAGCAAGGAAGGGTTACAGTCTGTGGA ATTAACATGACAGTAAACAGATAGTCGGTCTAAATAGAGATACAAGATGCACCATGTACATGAATGCATA GACAAGTTGGATACATACATGTTAGGATTATAATATGAGGATAAAATGGTTGCAAAATGAAGTAGTGATT TTGACATAGAAATTTGAACGAATCATTTACAATAAGAACAAATGCCACATACGCATCAAAGACAAAAGAC ACACAAAGGAGGGAGCATTGGCATTTTAAATTCCTGCTACCTGTATTATTTCTTTATGAAGGACTTTAAA TTTTAAAGTAACAGCATTATAGTATACTTGGAGTGTAATTTTGGGTTGAAAAGTTGTAAGTTGAACAATT TTCATCATTAGATTTCATTTTGGCAAGATGTGAGGATTTTAGAAGTCTTGTGATGAAAAATGTGAGATGT CAAACCGCAATGCACTACACTTTTTGTCAGCATTAATTTAATTCTAATTCAACATTTAATTATTTTTTTT TTTTTCATTAATGTTCTCTATTGCCTTTGATGAAGAAAAAATCAGTTTAAAACAACATTTGTGCTATTGA CAGTATTATTGATTTAACAAATTTTATTTTTCATTTGAATGATATACAAAGAAAAAGTCTGGCCTTGCAT GTTGATGAATTATCAAAACAGAGTGGTGCATTTAAAGCTAACATTTCCTGATTAGTTACAATTAGAATTA TTAATACCTGCAAAGTCTTGCACAATTTACAAGTAGTAAAGTGAAGACGATACTGTCATTTGCAAGAAAA ATACCTTGATGTTGCATATTAGTAACATGATTTTATGATCATGAGTAACAAGGTACATGTAAATGGAATT ATCGGACAAAGCAGGTGTGCAGGTATTATGATTTCTAGTTTGTTGAATAAATTTGAGAGTTAATTTATCT TATTTCATGTCCAATGAAATGATTTTGCAATGCTCATAATTTCCTTCCACTAAGGACTGGAATAACTAAT TTCATTCAAATGCTAAACTGCCTTGTGAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds