Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030996504.1 PREDICTED: Strongylocentrotus purpuratus microtubule-associated serine/threonine-protein kinase 1 (LOC590093), transcript variant X3, mRNA TAAAAGTTCACTTCCATTCTCTGCGATGCTGAGCAGTGAGTGAGGCAGTCTGCTGGTGTGCGACGGTGGC AGTGCAGAGGCGGTGGTGTAGAGTGTCGCTTATCCTTATTATGTTCTGCGGAGGACTGGCATGAACACAC AGTGGATTGAATGGGTGACTGACTGACTGATGTCAGTCAATCGGTTTACAGACTGCATGCATGTTGAGTG GGAGTAGGTTGTATAGGATTAGGTTACATCTATCAGCTGGTAGTTGCTAGCTAGCAGTGGGTTTTCATTC TGTCTGGGAACCCTGGCCCTGCTGAGAACAGGATATTCGTTAACCTTGACTGCAGCCAGGTCTAGTGTTG CTGAGCTGAGATGACTTTGTTTTCATGTGTACTGGGAATGCATTAGAGGCTCGCTGGCTGTTATGGTATC AGTGTGGTTTACTGTCCATGGTTTTAGGTTACATTATGTTATTGCGACAAGATACGTTTGATTCAAAATT GAATTTTGAGGACAGTTTGCCAGTTCACATTACACTTTTGGAGAGTGAAGTTTGAAAGTTGTGCCAGTCT CTGTTTTGATATTTTAAAAAATACAATTGTCATTGTCATTTTTGCAACGCAGTTAAACTGGTGGCTTAAA TGCAAAATCTTCTCTAAGTTTGTCGTCTTGGGTGAAAGGCTTGCGTCATCCAAACTAATGAGTTCACCTC TGCTGCCTCCAAAACAAGATGGAACCCCACAAAGTGGGCACAGCTCCATCGTCTTGTGGTGACCTAGTGT CCATGAGGGGCATCCTTTGACAGTAATCAAAGAACACGTAGGCGTGGATCCTAGCTGGCTGTCTTCTTGT TTCTTCTATTCTTCATGTAAATGAGCAGCTGTAGGAGAAATATTCTTTTTATGTCTTTATGACGTCAGTC TGCTCTACTCTGCCAGAAGGTGGTTAGTCCATTGGGAAGGGACTCGACGCCCCTTCCATCAGCCTGCCTG CCAAGTGTCATCTCTGGAATAGGAGGAGAGGATATCTGCATACATGTGTGTGTATTGTGTGTGCATCATA TTCTGAGGATCTCTGGTATTTCATGGACGTCGACGGTGAAGCTAGCTCGCATCGTACCATGTGTTTCATA CATTGCATCCTGCTGACTTCGAGACAGACGGACAAAACATGTCATCGCTTGTGCATCTCTTAAATCCATC TCAGTCTGGCCTGCCTCCTTAATTTGAGGGAAGGCCAGGAACACGCAATTTTATTGACTCGAAAAGAGAG ACAGTGCTTCAGGGCTTTTTTATGTTTCGACTTCAGTACAATTGAATTTTGAACAAGATGATGTCCGATT TGGAATGTGATGTCGTCATGTCTTTGGTCCAGCGGCGACCGCGGGCTCGAGCCCCATGTCATATCAACAT TGTGTCTGATGGTGAGGACTGTGGCAGACTGACCCTCGACTCACTGCATAGCCCCAAACCAAAGAGCGCT GGATTCGCCACATCCTTACCCCGCGGTTTCAAACTAGCCCGCCCCCTCTCCATTGACGAGAGTCGCTATG TCAGGCGCGGTAGTCTTGGAGCAGCAATGATGGGACCGTTCCACTTGAGCGTAGGAAGTTCCACCGGCTA TCAGTCCAGTACGACCAATGCCTTGACCTTAGGAGGGGATTCTGGTAGCAATCTTACCAGGATGAGGCCG CTGCTAGGACAGTCTGCACCTTCACTGTCAGCTAGTCTGAAGGAGCTGTCACTAGTACGGAGAGGGAGCA GTTATGGACGAACCAGGAAAGGAAAAAACAGTTCCCCGGTGATGAAACGTTCAAATTCTCCTGGTTCTCA TGGCGATGGGAGTCCTTTGGAGAGTCCTCGAGTGCCGATCCACCCTCATGCCCACTTTGCCTTTAATTCT GTACGTCAGGCTGACGGTAGAAGATGGTCTCTGGCATCCCTGCCGTCATCAGGGTACGGTACGAACACAC CCAGTTCAGCTGTATCGTCGTCCTGTTCAAGTCAGGAGCGTCTTCATCAGCTACCCTACCAGCCCACCCC TGAGGATCTGCAGCTTCTCTCGCAGCATTTCAGTAGCAGTGAGAGTAACGTAGGAGGGGACCAGGAAGAT GGCAGGAGATCACCTTCATGTAGACCTCGATCTAGGAGTCTTAGTGGTGCAAGCAGTCCGTTGGTGGGTA GTACGGATCATGAGATGCTACACATGAACAGCCTCTACAAGGAGAGATTCCCCAAGGCAAAACAACAGAT GGAAACCAAGCTCACTGACTTTATTAACAAGTATTCAATGGATATGAGCCAGGAAGGGCACGATGCAATC TATGCTTTCCTTGTCCATCAGACGGTAGAACTAGCCCGGGACTGCTTAGAGAAATCACAAGAAGACCAAG TCTCCCATATCTACTTCACTGAGGTGTCCCACAAGGTCCAAATGCTAGCAGAAGATGCTGAGAACCGATC TCAAGTCTCTGCCAAGTCATTTACGAGGGTAGTCAGAGACCTACTGATGATACTAGCCAGGCCAGCTAGA CTTCTTGAATGCCTGGAATTCGACCCTGAGGAGTTTTTCCAGCTGTTGGAATCTTTCGAGGACCAGGCCA AAGTTGGATCCACTATTTCAGAAGACTTACCAAAGTACATCATCCACCAGCTAGGACTTACCAAAGATCC CTTGGCATATTTTGATCACTTTCCAGACGTGGGCGACCTGTGTGGGGATTCCCCCTCACCGCCACGCCAG GATTCAGGAGAGGATGAAAAGAGTAATGTTGATGGTAGAGACTGCTTTAAGGAACCAAGAGAAGAAGATT TTGAGAACATCAAAATCATCAGCAATGGAGCATATGGTGCTGTATACTTGGTGCGACATAAGGCATCTCT ACAGAGGTTTGCCATGAAGAAGATATGTAAGCAGAACATTGCCCTTCGGAACCAGCGGGAGCAGGTCTTT GCTGAACGTGACATCCTCACGTTTGCGGAGAACCCTTTTGTTGTTGCTCTCTACTGCAGCTTTGAAACAA AGAAATATTTGTGCATGGTGATGGAGTATGTAGAAGGAGGAGACGTAGCTACTTTGATCAAACATATAGG ACCACTTCCTCTAGAAACAGCAAGATTATATTTTGCTGAAGCAGTACTAGCCATAGAGTATCTACACAGT TATGGAATCGTACACAGGGACATCAAACCAGATAACATGTTAATTACATCGACAGGACACATCAAGCTGA CTGACTTTGGTCTGTCCAAGATTGGTATCATGAGCTTAACAACAAACCTGTATGAAGGCAACATCGACCG GGACACCAAACAGTTCCAGGACCAGCAGGTATGCGGCACACCCCAGTACATCGCTCCGGAGGTGATCCTC AGGCAGGGGTACGGCAAACCGGTAGACTGGTGGTCTATGGGCGTGGTCCTCTATGAGATCCTGGTAGGAT GCCCCCCTTTCTTTGGTGAGACTCCGGAAGAACTCTTCGCACAGACGATCAATGTTATGATTGAATGGCC CGACGGTGATGATGCCCTATCGGACGAGGCCATGGAACTGATCAACGGTTTCCTACAGCAGGACCCTCTC TTCAGACTGGGTACAGGGGGCAGTGAAGACGTCAAGGGACATAGATTCTTTCAAGGGGTTGACTGGAATG GTCTGCTGAGGCAGAAGGCTGACTTCATTCCACAGCTGGAAGGAGAAGACGATACAAGCTATTTTGATGC GCGCTCAGAGAGATACAACCATGAGCTGGACTCAGACGACGATGAGGACATTCCTGAAATTGGCAACTTC TCCACCTTCTCCCCGCGGTTCAGTCGATCGTGCAGCAGCGTATCACAGTCATCCGATGACACAGAGAGAA GAGAGAGGTCTCATAGTGCTTCGCTACCCCTAGGGGATCTATCCCATCATTCCTTGCCTGCCAGGAACTC TCCGCAGCTCCTGACGGTGGATGTTGACAGGGCTAGTAGCCTCCCAGACAGGGATATCGCTCGGCTATCG AGACGTTTCTCAGCCAGCTTTGCCACCGATGATCACGGCTCTTTATCCATTTATCGAAATATTTTGAGAG ACAGGACTGCCAATGCCAAGGCCGCTGAGCATTCTGACGCCTCCTCCACCTCCCCCTGCACCCCGCCCCA CGACTCCTCCCCTCGGTCCCGCCGTCGGACCGGCATCGCCCACAAGCCACCCCTCCGGGAGGTCCTCCCT CGCTTCTCCATCTCGTTTGACGAGGACAGCCCATTGGCATCGTCGCTGGAGTCTCAGGGTTCTCTGGGGT CGTCAGGGTTCCTAGGTGCAGGAGATGGGAAGCACATCAGCTCCTCCTCTGAGAGACAGAGTAGAACGGT TGTCAAGTCAGCATCGTCTAGTATGCTGTCTCTTATCATACCATCAGATGAGCTTCATGTGCCATCGCCC ATCAACTCCCCAGGAGGAGAATCAAGCAGCTCCAGAGACGATTCTCCGTCTAGGGATCCATCCATGAGTA GCATGAAGTCACCCATCGTCATCAAGAAACCACCGCGAAGGAAGACCATGGGATTCCACATGCAGGCTAT CAAGGTCTACCTAGGAGAGTCCAACATATACACACTGCATCATCTAGTTAGGCATGTTGAGGAAGGAAGT CCTGCGTACGAAGCTGGCTTGCGACCCGGAGACCTCGTCACTCACATCAACAACGCTCCAGTAGAAGGCT TGATCCATCGTGAGATAGTAGAACTTATCATGAGTGACACACAGGTTGTGATCCATGCCGTACCCATGGT CAAGACAACCATTCAGACATGTGGACGAAGGAATACAACGTCCAGTAAGATGGCCAGGAGAAAGAAGCCC AAGCGTAAAAGGGACTCCGTAGAGCGAAGGCGGCGCAGTGCAGTATTCAGAAGGTCGAGTTTGAAACGGG CATCGACAGATGGAAGCAGGGCTAGCTTAGCAGCATTAGGCAGGCAGGGAGGGACGGATACATCTCCTCG GTCGCCGACATCGCGGTCACCACGTTCCCCTCCCATGTTTCACATACCTAGTGAACATTCAAGCAGCACA CCGTTGACATCGTCACCCAACAGTTCTCCATCATCGAGCTGCCCTAACTCACCCGCTGGACACTACACAT CATCCAGACCCAGCACACTGCAAGGTCTGGCTCATAAACTACCCTTCTCATTCAGACCTGGAGGGAACCG TAGGAAGTCAGTCGGTCACATCCCACTGTCCCCTCTAGCCAGGACCCCCAACCAGTCACCAGCCCCTAAA TCCCCTGTTCGTAGCCCCAGCCCTCTGGCTGTGGTGACCAGTCTTGGGCATTCTCCTGGAAGCTCCAACA CCACCCAGTCCTACCCCGCCCACATGCTGAGCAGCCCCACCCTGGCTGCCCCTATGAAGGTCAAGACCAA GAAGTACATGCGCTCTAGGAACCTTGAGACTCCGCCGTCACCGCTCCTCAGAAGGGCTCTCTCACCAGAC CATGAAAAGACCATGGACATGTTTGATGTTCAGCTCAGACCTCGAGCGGACTCAGCTTGTGATGCTCTCT CAAGGGAAGAGAGAAGTCTCAAGAGATTAGGCATCTTCGGCAAAGAGAGGGTCGCTGAGAGAAAATCTAC AGGGTCCACTTGAGATCAATCTTGATCATGTGTGTAGAAATGCAAAGTATTCAGTCTGCTATATATGTAT ATTTGACAGTTTTTGGATATGATGGTCTTTGGTTTCACAGTGTCTGAACGGAAGACTCTCAAGCACATGC CATGCTGTGTTATGTGAGACAGCTTTAAGATACAACCATGGATGGTTTCGTCTTGGTAATCAAGACCAGA TTTATTTTGCTGAAACAAATTGATAAACATAAGAGCATTGCAATTTACCAAAAGTTGATTAGAAAGTACT TTGAGTCATCATTAATTCTTTATTCTTTGCTATTGTGCCTGTATGTTTTGCCAAAGATGCTGAAATAAGA AATAGATAATGATGCTGACATAGCTGGAGTGATAGCATTCATCAACAACCTCACTAGCTCTTTTTTGGTC CACTTTAGTCCATACTGTAGACTGCCATTTCAGCATATGGTACGCACACACTGTATGTGTGCCAAAAGTT GACTGTGGTAATTTGAATAGTCGACCAAAGCAAGGAAGGGTTACAGTCTGTGGAATTAACATGACAGTAA ACAGATAGTCGGTCTAAATAGAGATACAAGATGCACCATGTACATGAATGCATAGACAAGTTGGATACAT ACATGTTAGGATTATAATATGAGGATAAAATGGTTGCAAAATGAAGTAGTGATTTTGACATAGAAATTTG AACGAATCATTTACAATAAGAACAAATGCCACATACGCATCAAAGACAAAAGACACACAAAGGAGGGAGC ATTGGCATTTTAAATTCCTGCTACCTGTATTATTTCTTTATGAAGGACTTTAAATTTTAAAGTAACAGCA TTATAGTATACTTGGAGTGTAATTTTGGGTTGAAAAGTTGTAAGTTGAACAATTTTCATCATTAGATTTC ATTTTGGCAAGATGTGAGGATTTTAGAAGTCTTGTGATGAAAAATGTGAGATGTCAAACCGCAATGCACT ACACTTTTTGTCAGCATTAATTTAATTCTAATTCAACATTTAATTATTTTTTTTTTTTTCATTAATGTTC TCTATTGCCTTTGATGAAGAAAAAATCAGTTTAAAACAACATTTGTGCTATTGACAGTATTATTGATTTA ACAAATTTTATTTTTCATTTGAATGATATACAAAGAAAAAGTCTGGCCTTGCATGTTGATGAATTATCAA AACAGAGTGGTGCATTTAAAGCTAACATTTCCTGATTAGTTACAATTAGAATTATTAATACCTGCAAAGT CTTGCACAATTTACAAGTAGTAAAGTGAAGACGATACTGTCATTTGCAAGAAAAATACCTTGATGTTGCA TATTAGTAACATGATTTTATGATCATGAGTAACAAGGTACATGTAAATGGAATTATCGGACAAAGCAGGT GTGCAGGTATTATGATTTCTAGTTTGTTGAATAAATTTGAGAGTTAATTTATCTTATTTCATGTCCAATG AAATGATTTTGCAATGCTCATAATTTCCTTCCACTAAGGACTGGAATAACTAATTTCATTCAAATGCTAA ACTGCCTTGTGAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds