Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030988511.1 PREDICTED: Strongylocentrotus purpuratus protein inscuteable homolog (LOC755119), transcript variant X2, mRNA TCAATAGGACACTCTCTTGTGTAAACAACCCCATTGTTTGCAACCTGTTTCCTATCTGTAAGATGTGGGC CTGTTGGCACTTGAGATTTGTTTGTTTAAAGTATACAAGTCTTGTACTTTATTGTGGCGCAGGAGTGTGG GGGAGCTCTGTGCCAAGTGTGAAACCTTATGTCATCCCCTGTTTTAATCCCCAGAGGTGGAGATTAAGCC AGATCTCATCCCTGAGATTGAGCAAGGCGCAGGTTTGGGTGTAGATTGCTTTTGTTGGATAGTTCAAAGG AAAATACATGTCCTACAGGCTTAACTGTTGCTTGGTTGATGCATGTAAGAAGGAGACACAGAGAGCAGAC AGCTTTGACTTGGTTACAGGAAAATGGAAGAATCACCTATCGGCTACAGAGGCTTGTTCCCGTTCAGATG TGATGTAGACTCTGTCCAGCAGTGGCTGATAGATATTCGCCTGATGCCGGAGCAAGAATGTACAACTGTC ATGGAAACCAAACCAATCCACAACTCACCACTAAACCTGGAAAACCTGGCTGCAACGGTCAAAGAAAGTG TCTACAGATTACAGAGCATTAAAGATGGCCTCTTCTCAGATCTTTCACAGATTTACATAAATCATAAGGA AGGAATCAGCAGCCAGTTTCGTCCCCTGATCCTCTCGCTTAACATCAGGATTAAGGCCGGTCTGGGAGAA TGTTCTAAGCTCTGTCCAGAACTGCAAAATATGGAACAGAAGCAACAGGAGATTATTGATGAGATGAGGA ACCTGATCAGAAGTTTTGATATGTGTTTAGATATAAGTGACCAATCAGTCAAGCTGTTCATACAATCTCT AACGACTGTAGCCAAAGCTATCAAGGCTTATCTTGAAATGGTCCAAGGTGCTCTCGTTCGGAAACTGGTA GATATGGTGCAAGGTGCAGCCACCGAGCTCAACGTCAAATTTGCCGTTCTCACCGTCCACAGCCTGGCAC AGGACGGGGTCTGGCTGCGGAGACTACTCATACAGGAGGACACGATGAGGGCGCTATTGGCCATCTGTCG GATCACGACATTCTCGATACGCAGCATTCCGATGACGGCCCTGGAGATTGTTTCCATACTTTGTACAGAG GTAGAAGGGAGAGCTGAGCTTGAGAAGGTAGGAGGAGTGGGTGCGCTGAGTGAGATTCTTGCCTCGCCGA TCACTCTGGAGGCGGTGAAGAAGGAGGCTGCGTCCGTCCTTGCGGAGATCACATCGCCGGATGCTGATAT CTTTCATCGTATGCTGTGCTTCATAGAGCACATGGAGGATCTACTCAGAAACCTTACAGTCTTGTGTGAC CAGACCTCAAGCCCTGGTGTGTTTCTGGTGGCGACCACTGCAATAGCAAACATCACATTCATGGACGCCA TGGCCTCGGATTACTTGGCCGAGTTTCAAACTGCAGAAGTCTTGATACAAGGCTATCTGAAGGGAAAGGC ACCAAGCATCTACAGCAAGCATCAGGTCATCACCATCATTGCGAACATCTCGTGTTCCAAGTCCTGTCGT GAGCAGATCGTATCCTCCGGCGGGATGAACATCCTCGCAGAACTTCTCCAAGGAGTCCCGTCCACCAGCC GGCCCACTTCCCTCTCCAGGAAGCTCAGCTTCGATGGGAACGTATCACTGGGGCAGATGGGGGAGGAGAG CGCCTACGAAGACATCTATCAGAAAGCGGCAACGGCTCTCGGGCGGCTGTGCCAGGACTACGAGACTTGC AAGATGGCGGTGGACTTGAAAGTGGTAGCTAGACTGGCTGACCTATGCAAGCATGCAAGAGAGAGGAATC ATAGAAGTGATGTACTAGTAGCATGTCTGGCTGCCCTAAGGAGAATCCACAGCCACATAGGGTCGTCTCC TTTGAAAGAGAACGATGTAGAGCAGCTGATCCAGCCTCGTCTTATGGAATCCTTCCTCCACTGCTCCACC ACGGTCAGGAGAGAGACATTTGTGTGACCTTTGACCGTTGATCAGCCTCCTAAGTCATCCTACATTACGC TAGCCTGTATGTCATTTAGAATTACCTTTCATCGTTGACCATTGGTTCCCACCTTAATCTTTGGAATCCT TCCTACACTGCTCCAGCACTTGTATGACCTTTCACCTTTGGAAGAGAAATATTTGTATGATTTTGACTCT GTGATTCAGCTCACCTTATGGAATCCTACCTCGAACTCCATTGCTATATAGGCCTTTGTGTGTGTGTGTG TGTGTGAGAGGGAGAGAGAGAGAGAGAGAGATAGAAATGTATGACCCTTGACCTTTGACAAAGTCTTCCA TTTTCCGACCTTCACAGCTCTTGTCCTGTCAGACAGCACAAACTCAAGTGACCTTTGACTTTTGACCCAT CGTTGTAGAAGACAACATGATGATTAGAGACAAATTTAAGTTATGCATCAAACGAAATCTCCTTCAACTC AAACTTGCCACATTTTGTTTTTTTGTAACCTTTGAATCAGGAGGAAAAAAAATGAGAAGCTGGAAATGTA AGTGGAAGAAAGAGTGTGAATTACAACTGCAACTATACCAAACAAATCAGGTTATAATTGAATTGATGAA GCAAGCTACACATGTATACTGTATGTACATTTTCAGTAGCAAAAGTGCAATCAGATTCATTTACATGGAA CTGTTACTTTACCTAAATCAACTCTGTTTTTTGGGGGTATGAAATCAGAATTATCAATTTATCATGGAAT GTTACCTTGTTTTTAGGGGCAAATCTTTAAAAAAAGTTAAACAATCATGGTTATGAAAATGAAAATTTGA AAAAGAAAATATGTTTGTATTTTTGTATATCATCATTCAAATTAAGTATTTCTATTTTAATACACCTTGG AAAAACAATGTACCAAAGAAATAACAGAAAACATGTATTTATTTTGAAAAAGTTGATCAAATAATAGTTC CAAAATATTTTGTTGGTGTCATCAATGTGCATTTAGAATTTAGGGAATGAGTGTAGAAGCATGAGGCCTT ATTCAATCAACTCATATTTCATGTTTTCTATCAATAATCATGAACGTCTTGAAAAATATAATTTAGCCAT ATAATGACCCTCTATTGATTCAGTATTACGTACAGTACTCCTTTATGAAAATGAGGACGTCCACTTTATA TTTTCTCTGTACATATTTTTTGTACAAGTAAGTCCATGTATACATTAATTGAAAATTCTGACTTAAAATT GGTATTGTGTAAAATCATGTAGTCAATTTGAACCTGTCTTAGTGGCTACCTCTCCATAAAGACCACCTGT CTGTAGTGGTCATGCATTTTGTCTCCCTGTAGATAGAAGTGTGTAAAGACGAACATGTCTGGAAAGGCAA CCTGTCAACAGTGGCCACTTTTTCTGTTTTCCTCATTGGGTGGCCTTTATAGACAGGTTTGACTGTACTT TTATTGCATGTTGATTATGTATATTGAAGAAGCAAAATACATGAATACAATGTCTATAATATTTATGACT GAATCCCAATCACAGCTCACAGAATTAGGAGACATGAATATAGTGCGTACATGTAATTATATGAAGCCCA ACATTAGCTTCCAAATTTATTTATTATGGACTAAGTATTTACAATCTTGAAGCTAACTGTAAGTGCAGTC CAACCCATCTCAGCATTTGTAAGTTGTCATCAGGGACAACTCATAATATATGTAATTTCTTTTGCCAAGT GCCTGAGAGTGCATAATTTAGTTTTGTATAAGTTTAGAGAAGTTTAATACAATAGATCAGATTTATATGG GTATGTTTGAGAGTATTGCATCATGGCTAATTCTTTTTGAAAGAGTTTACCAGTTTATTGTTTTGTTTGT TTAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
