Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT097332.1 TSA: Strongylocentrotus purpuratus WHL22.221102.0 mRNA sequence GTGGTGAGTCATCGTTCCCCAAATCCCCTTTTGGCTGCCCTTGGTTGGAACTAACAAATGGTTGATGGAT GCAGCCAACAACAGAGCAAATCTAAGGAGAATTTGCTCACTTTTAGCTTGCATTGCAGTGGTCTGCAACA GCATTGCGTCAACGGAGGGGAACCCCGGGACTTTAGGCGAGAATGACAGTGACCGTTTGGGAGATGGCGC AGGTATTAGAAATGTTGCGAATCACCCGTCATCAGAAAGGTGTACAGCCTCTCACTCACAAGGTGTCAAC AGACCGATGATGATCGTCAGTACTGTGGATGGGAAGGTTCTTGCGCTGGACATCCAGAATGCCGGTCAAC AGCAGTGGAGTATGGATGCTGGGGTTGGTCCTCTTCTCTCATCATCCATCAGTCAATTTGAGATCATGGG TCCAGAGGGATTATACAAGGTGATCCCCTCACTGAACGGAGGTCTGTTCAAATGGGATGGAGAGACTCTA GAAGCAGTTCCGCTCACAGCAGAGACTCTTCTCAGTACCTCCTACAGACTCAATGAGGAGACGATGATGG TCGGTGGAAAGGAGATTAACACCTTTGGTATTAATGCTAGAACTGGAGAGTTGCACTATATTTGTGGAAC TGGCGGATGTCAGCTTTATGGAGATGAAGCAGAAGATGACCAGGATATCATTGTCATTCAGCATACCAGG CAAACTGTGAGGGCAGTAGACCAAAGAAACGGCATGGAAAAATGGAACTTCAGCGTGGGCCAGCATGATG TCACGTTCCTGAAAGGAAAGCAGCCCTCAAACGATGATCTAGCGGAGGAAGAAGAAGTGGTGTGCGAAGT GGACGATGAATACGACTCTGAGGATAACATCCCATCAGTGAAAGTAGACATGGCAACCAAAACAGTCTTT GCTCAGGGCGGGGCTAGTGGGAGACAACTGCTTTGGTCTCACGAGTTGGAGAGCTGCATAGCAAATGCAT GGACAATCCAAGATGGCGTTGTGAGGGTGGTTGACCTCTTTGAACCTGTGACCCTTGGCCTTTCCTCTGG TGCTGACCCTCAGATGACCCCATTCTTCTCTGATTATTCCCAACCTATGCTGTTCATAGGAAAGCACAAG GACCAGCTCTACGTCCAGCCGTCACCAAACACCAACTCTGAGATCTCCCAGGCTGCTTGGGCGGCCCAGC GAGGGCAGGCTAACCCTCAGGACGGTAGCCTTACAGCACCTAGGGTACGCTGGAGGCCCTATGCATACAC CTCTGTCTCCAGGACACCCACCATCGTAGCAGCCAAGAATGAGGAGAACCTGCAGGCTGCTGGCAACAAG GACAAGGGAGAATCTAACAGGGATGTCAGTGTGTGGAATCAGTACCCCTTTGACAATGGATACTACCTAC TGCACCAGCTGACCCCTATGCACATGATGCCACAGAATAGACAGCTAGAGGGCAATGAAAGTCAAGATGG CGGCTTAGAAATACTCTTCAGTGTGTCTGTTTGGACATGGTGGAGGGAAATCTTTGGAACCAGTATGCTA CTTGCTATTGGGATGCAACTGTTCTTCCATTACGTTCTGAAACCACGAAGGAAAAGGAGAGCTGCTGAGA AAGAACTGAACGATGAAGGAGAAGAGACAGAAAAGGAGCAGGGGAAACCATCCAGCCCTGAACTGGACCG TTCAAGCGACCCTCTAGCTCAGGAGTACAAGTCAAGGTACTTGACTGACTTTGAGCATACAGAGTGCCTT GGTAAAGGAGGGTTTGGAATCGTCTTCAGAGCAAAGAACAAGGTGGATGAAAACAATTATGCCGTCAAGA GAATCACCCTCCCAAACAGAGAGGAAGCGAGAGATAAAGTCCTAAGAGAGGCCAGGACCCTGGCTATACT GGATCATTCAGGCATTGTAAGATACTTCAACTCCTGGCTTGAAGAGCCCCCTCTAGGTTGGCAAGACATC CAGGATAAGAAATTTGTGGGTGAAAGCAGTCTTGGTGGGAATGATGGTCTAACTTCTCTGGATACTCCAG CCTTCTTCAACAAAAACAGCGAGCTCATCCGAAACCATGATCAGTTGATGCAGCAGACGGGCGGCAGATC AAGCATGGGTCCAAGCTATGTTCCTTTCAGCAAAACAAGGGAAAGTCCCATCCTTAAATTTGACCTGTCG GATGATAGCAATGTTAGCAGTGAGGGCAGGGTCGATCAAAAAGGAGACAACAAGAGAGCGGGAGTGGAGT CTGACATCCTCTTTCCCGGAGCCGTTTGTGAGTTTGAGGAGAGTGGTTCATTCAGTATTGTATTCCAAGG CACAGAAGAGGAAAACAGTCAAAATATGAGTGTTATTTCAGACACAGGAGAAGAGACTCCACAGAATCTA GCCACCTTTGATGAAAGCATATCCAACAGAAGTACCGACACATCCCTTGATAATACAATGGATGTACCCT TCAAGCACTATGCTAATGATGCGAAGGATATCAGAGACCTTGATCGAAGCGAATCATTCCAGATAGTCTT TGAGGATTCAGGGTGCACCGATCAGCCTAGGTATTCAGACTCCGAGTCCACCCAGTCGGACACCTCTAAA TCCTCCAAAAATAGTTCAACACCAAGCAGCGCTCCTTGCATGGAAGGACATTGGAGAGAGACGTCCTCGC ACCATGCCACGGATCCAAGCCAGACCCCCACCACGACATCGTTGGCAGTGATGAAAGTGCAGAAGATCTA CCTGTACATTCAGATGCAGCTGTGCCGTAAGGAGACCCTCAAGGATTGGCTTAGTACTAACACGCTGTCC AGGGATAGAAACAAAGTGCTTCATATCTTCCATCAGATCCTGGAAGCGGTCAACTACATCCATGGATGTG GTATGATTCACAGAGACCTCAAGCCCTCCAACATATTCTTCTCTGTGGATGGGAAAATTAAGGTAGGAGA CTTTGGTTTGGTGACGGCCATTGATACGAGCATGGAAGGAGCTGAAGACTCTGTAGATGGGGCTGCTGGA CATCTTCATACTGGCAGAGTAGGAACCCAGCTGTACATGTGCCCAGAACAGGTCTCTGGTCAGAACTACG ATCACAAGGTGGATATTTTCTCTCTTGGACTCATCTTCTTTGAGCTGTTCCATCCCTTCTCAACCCAGAT GGAACGCATCACCGTCATGTGCAAAGCCAAGAGACAGGATTTCCCTAAAAGATTCACCAAAGAACTACCC CTAGAGGCGAAATTTGCAAAATGGCTGCTATCCCACGACCCTGACCTCCGACCTGACACCGATGAAATAA GTGAGAGCGACAGTGACATCTTTAGCCAACTATACGAGGACTACGTTCCACCTTCCTATCACAATGTTAG GAACAGAGGAATTTCTAATTCATCGAGATAATGATGGCAGCAAGGTAGTCTAAATATATACAGACTCTGT CGAACATTTTCAGTGTGAATTCAAGAGCCAGTTTTTTTCATATTCAGGAGGAACAGATGCAGGAGAGAGC CTGCAGAACTGTTTATCCACATTCCAGGAGTCAATTAAAGGGGCTGTAGCATGGGAAATACTGGTTGACG CCATCTACGTCTCCTTTTGGACAACTGCACGTACACGAATGGACCGAAGTTCTCCTCACACTTCAGTTTT GCATAATGTTGCATGCACGTGAATACGTAGGCCTACTGCGGTTACGTCGTCCGTAGTCGTATTATACCTG ATTTTCCCCAAGTGGGCCTCGGGGGCAGCGCATAGTCTCGTCATGCTACAGCCCCTTTAACAAATGTTAA TGTTGATTCAGCACAAGGAATACTCAGTTCACTGCATATATTGGACATGTTGCATTTCATGCACTTTTAT GTATTTCATTAGAAAATTAGAGGGAAATATGTATTAGGAACCTTATCATAAGGAACACTGTTAGGACACA AGTTCATTATTTCATGGTTGCTTTGCAGGTCACACTTCTTTTATTCTATTGTGTCTTTAAGCCCTGATGT AATGTCCAAAGAAGTTTGTATAACATGGTTCTGCTGTATATAAGTGTTGTGGATAAATAGTGCAATCATC AAGGCCTTGAAGCAGCACTTTCCTTGGAAGAAGAAGAAAAGGGTAGTTTTAGAGATAGAATGTGATGGAA CATCAAGTGTTTTAGTCACCTTCACTGCACCCGACCCTAGTTTTATGATTTGAGCTGTTTAAATATACCT TGAAGCAACTTGGTTGTGTTGGATTAGAAGATGGGTACCTGGTAAAAAAGTTACGGGGAGGTAGTAACAA AATTCCTTGAATTCTGCAATAATATCTTTACATGTAATAGAGAGGTAACATAAATGACCAGTCCTATCTG ACTGATAAACTAGAACTGTAAAATCGGCCTACTGAAGTTTATGCATAAAAGGTAATGCATAGATGCCACC AGGAGAAAATCAGTGTTAACTTAAATAATTGAAATGTGACCTACACTGCCAATAGCCAATACTTTTTTCA CATGAACATCAGGAGACTGATTTGGTATGGATTTATATGTAGTTATTGTTAACGGATGAATAGGACTGGC CGTAAATGAGACTAAGTAAATTTGCTGCTACTTTGTCATGGATGAATGGACTGGAATTGAATCAATACAT AATTGCATTGCATCAATTATGATTTTTCTGCATTCCTGACAGTGCTGTTGGACAATATGTCCCAATGGTG AATAGTTAATACAGTTGTGAAACTGTTAAGTAAACACCATAATGTGCAATTTATAGAAGTGTGTTTATCT TTAGTATGTAGTATGAGATATGTGTCACTGTTGTACCAGCTCACCTCCTTGTCAGTTTGTTTAATGGAGT TTTCTGTAACAATTAAACCAAACTAAGTTTAGATATACATTCATCGCTATTCTAGTATGTTTCAGCATGG AAAGGTGAAATAAAAAGAGTTTGGGGGCGTAAGGTCACATGTTACGGTCACATGATCATTGCTCTGTGAA CATACATATAGGCGATGGTATATTAGAGGTTTTTGTTATATCCAACAAATATTTTCTGTAAGTTTAGTAC ATATGAAAGTGTGCTCAACATTTTCTTCTTGCAAAGAGCTTGCAAGAATTCAAACTGAAATGTCCCATTT TTGTGCTGTGAACAAGTGTAAAGTAAGTTTTGCATTTTTTTTTTTTTTATATTTGTGTATATTTGCAGTC TACTTTATAAGCTTTGTATTTATTTTTGTTTCCCAAATTACATGTACCTTCTTTGATTTAAAGTAGACAA CCCAATACATTGTAGTGTTAATGAAACATAAAAACTTGAAATATGAAAAACAGAATATGAACCGGTCATG ATTTTTCCTATGTTATGACAAGATATTGTATATCTTGATTAAGATTGTGCAAAGAGTCGATCAACAATTG TGATTTTACATTTAATGACAGCTAACATTTTACAGGGCTTTAATTTCTTTCCTGTTATTTTGTATAAGTT CTCCAAGCAAGCAATATAAAAATAGAATGTTTCATAAACAAACAGTTCTTTAATTTCCTTCATACCTCCA TTACATATAGGTTTTAATGATACCAAAAATTGTGTTTTATTGTTATTTGTCCATTCGAAAAGTTATACCC TAACATCATGATGTCTTCCATTTAAATGCATATGTCTTCAGAAATGAATAGTTGATTATGAAAAGTGTTT TATTCTTGTAAGTTCATTTTTCAGAACTTTATTTTTTTTAAATCATTTTTTGGGGGAGAATATATGCCAT ATCAATTATATTTGTCCAATGTTCTTGGATAATCTGAGCAATGGTAAACCATTTCACTGCAACACAATTA TAGCCATAGCAAATTTTAAATGAATATTTGAAGTACTTGTGTAAGCATTGTGATGCGTTATTCTATCAGG AACATGTAATGTAAAGTATAGTTAAAGGATTATGATGTAAATAAATATATGATCAAATTCATATGCCTGT ACAGTCTTATCATTACAGATATGTATTAAAAATATACAAGTCTATGCCAGCATTAGTCATTTACCTCTAC TGGTATATGATTTTTTTTTTAAATTATTTTTTCAATGATCACCAGAATTACTTTTCCAGTGTAGGCTTGT AAATTATACATTCTTTGCAAAAGAATCTTAAAATAAAAAAAATTTTAAAACAGATGAAAGGGGGAAAATT AAATATTTTATTTCTTCAATCAAAGTTGGTATAATACTGTACATCAAAACCATATTGTCTGTTGGTTGTC AGAAGGGCATTTACTTGTATCATTCTTCGTAGTATTTAGACAACTACTCTAAAAGAAAGCAGAAAAATCA GAGGACCAAACTGACCAAAGTTTTAATTAAATTTGACTAAATATAAGAAGGTTATGAATTTTCGAAAGTT GTAATCACTATACGTATGGGCACTTCACAAATTGGCTGAAGCAGTAATGTCAATGTGATGTAGTGCCGGA CTACTTTCCCATCTGTTCCATCATATAAAATGACTACAATTTAAATTTTTCAAAAATTTCATGGCTCAAG AGGGTCTATTCTTTTTAGAGGACCTATAATAATATGCTATCTACAATATATTCTGAGTACTGGTAGAGCC TCAAGGGAGAAGGAACTTTTGAGAAAAATAGAAATTAATGATATTTTTTAGACTGCAAATGGGAGATTTA TCCACGTCCTACGTCACAATCCACTTTCTTACTAATTGTCTGATTTATTGCAAACTTTTGCCATTCTGTT TCTGTTATTTTTCTTTCATACATGTATATCTACTTATAACAAGGGTTGGATTGCCTTTTAATACTCTTCT GGCTCTTAGCGAGGTATCTGAATCTTCACACCAACGTGGAATGTTGGTGAACCAAAGAAACAAATATAAT TTAGTTTATGACAAGTAGAGAGAAAGTATTTTCCTTCATAACTCTACATTGAGGTTTATTTTATCACACA TTTTGCAACAAATATCTAACTTCATCCTGAAACTTAACACTATACCTGATCCTACCATATCCCAATTGCA ACCCCAACCCTAGACTACACTTAAATCTTTGATGAAATAAAGCCAGCAGCAAATATGATTAAGAGCCAAA ATATTGATGTCCTTTGCCCTGACCATGCCTTGACCATGCCTTGACCATGCCTTGACCCTGCTATAACAAT GCTTTGACCATAGTGCAGAATACTGAATCTGCAGGATTCAACATACAGTATAGTTTATCAGCATATTCAT CAGTACATTTATGAGAAAGTTGGGACAGGGCACATCAGGAGTTGTGAGAACAAGAATATTACCTCAGTAT TGTTACACATAATTTTTCTTCAATTCAGTTCTTAACATTTTGAGACTGAGATCATACTACAGTATGGCTA TTCAGGGGGGGGGGGGGGTATTGGTGAAGTTTCACTCTACCAACTCGATGCACTAAGCTAGTAAAGTACA AAATTACCATATATTCTTATTCTATGTACGATTTTCTTTGAACAAGGAAAACACTTATCACACTACATGA ATACCGGTGCAATCTTTGAGTAAAATTATTGATTGAGAAGAAGAAACAGAAAAGAAAGACAGAAGATCAA ATCAGTAATAGAAATATGATAAGAGGTAATCATACATATTTGCAACATATAATTCAAAATTTCAATTAGA AGTTCAACCAACAAAATGATGATTATTACATTTCTATAAATGCATGTATATTGTACAGTAACAAATGTGT TCCTATATCCTGAGTGCACATCTTATCAGAAGCATTTACAGGACTAAACTTCACTCCAAGGCTACTATGT TAGTCCAATGTGAAAGTCTACATGTTTCTTTCAGTTCTTCACTTCAGCATCAAATGAGTCATCCAAAATA TCCTCACATTTCTCACATGAGAGTTTGGTGGATCTCATCTGTTGAACAAGTCCTGGGTTGAATTGGGTAG CCAGGTCCACTTGCAAGAGTTGACAACGTACT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds