Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003723764.3 PREDICTED: Strongylocentrotus purpuratus glucose-repressible alcohol dehydrogenase transcriptional effector (LOC587672), transcript variant X1, mRNA AAACTAACCTAGCTCCCTGATCGAGTGTGATGAAGAGCTGTGGTGATCGAATTGAATTGTCGACTTCCAC CTAAATAAGGACGGAGAGAACATCAATTCAAACGACGTCTCGAGAACAGAGAAGCTGAAGATGAGCCATG GAAATAGAGACGGACTACCACCAAACCTGCGCAGGGAGTGGCTCTCGGCATCTGCAGATTGCCATGGAGA TGACAGTAACATATTCACTCTGATGAACTACAACATCCTTGCTGACTGCCACATCAAAGATGGCTGGTAT CCATACTGCCCTCAAGGGTTCCTTAAGATGTCAGATAGACACCGAGCCTTGATGCTAGAGATCAAACATC ATGATCCACATATTGTCTGTTTACAAGAGGTTGGACCAGATTATTTTGCCCATCAGCTAAATCCTGAGAT GCACTCTCTCGGTTACCATGGTACTTATATGAAGAAAGTGAGAGGTGTCATGGAAGGAGAGGCAACATTT TACAAGAAAAACAGATTTGAGATGCTAGAGGAGAAGGGAGTGGTCTTTAACGAGCTGGCCGCAAAGGCAT GTGAGAAGGCTAAGCTTTCTGATGAAGCTCAGGAGAGTGTGCTGTCTTACGTCAATCAAGATCATTTAGT CCTCCTAACTAAGCTACAAGATATAAAGACAAAGAAGAGAGTCTCCATTGGGAATACACATCTCCTGTTT GGTGACTACAAAAACATTGATGTTATAACACTACAGGCAGGGTTAGCCATCAATGCCCTAGGGGAGTTTG CAGGGGGTCCTGAGCATGCCCACATCCTGTGTGGAGATTTCAACCAGGAACCAAACATGACGGGATATCA GCTGATGCATGATGGGAAGCTAGATGCCAATGGAGAGCAGTTTATTCGTCAATACCCAATCAAGATTGGT AGCGAAAGCAAAAGCCTACTTGACATCTTGCCTCTGTGTTTCAAGCATAACTTGCCTGGGTTGAAAAGTG CCTACAAAACAGTTGCTGGTCAAGAAAGTCCCTTTTCAGACGTAGATGATTGTGTGGGGGCAGAATGGTC AGCAGACATGGTTGAATTACCAGCACAGATCTCTAAACCTTACCCACCTAAACGCCCTCGCAAGCCTTAT CTGACCGACCCGAAAAAATACGGTGATAGCAAGTTCATAGCCTCGTTGGACTATCAGTGGTTTGATTCTG AAAGTCTTTGCTGCTATGGTGTCTTAGAAATGGTGGACGAGAGGGAAATTTTTCCATTTTATGCCTGTCC TAATGAGTATTTTCCTTCTGATCACTTGCCAATCATTGGAAAATATAAGTTTATGTAAAGTTGTCATTAC ATGAATAGTGTGAGAGTACGAGGCAGTTTGGTTTATGATAGAACTGCACTGACATCGTTCCAGATAGAAT TGCACTCAAGTCTGGGAGAAGACTGTCGAGGTCTTATGAATACAAGTTGCAGGTTTCTTCAATTCTGCCA GTCTTATTAAAGGCAATTTACCTTAGTGTAAAAGATGTAGATGATCCACACGGTAAATATGATGGCAATA GTTGTAAGGCAACTATTCTGGCTGTCAAAAGTAACAAAGAGGGGATTAGTATATACAAAGGAAACAAGAA AAGCATTTACAAAACTAATGCATGATTTTCTTTAAATCATTCAAGCTGTTTTGGAAACTCTGGAGTCAAT GAGTAAATGAAAGCACATTTCATTTATTTGAAATACTATTTTTTATGTATTAACAACTCAAAACAAGTAA ATAATCAAATTGTTATGATACATTCAGATTTATAAACTATTAAAATTCATTGTTCTTCAATATGTAGCAG TTGTGTAATAGGTATGTGAAATGATTGAATATCCAAATTATGTAATATTTTTAGATTTTTAAAGCTCTCC AACAATATGTATAATTCATTTTTTTAATCATTCCTAAATGTAGGTGCCATTAATTGTCTTTTAAATAAAT GTACAGTATTAGTAATAAATATGCAATTTTATGTGAAAAACCATAGAAGAAGAATGAAATTCTATCTTAT ATTATACTGAGTTCAAATGATAGTCTATGTGCAGGTGACAAGAATACCTGTATTTTGCAAGGAACCATAA CATATTACATCTCATAAAAGTGTAAATAACTTACAGCAAATTGAAGTACGGTGTGCAGAAACCTGCCAAT TGTCTTTCATATGTTTTTACTCTTTTTATATGTAGATCTATCATTAAGTATAAATATTGACCTCCTTCAG GGCAATACAACATTGCCTGAACCGAAGGTGAGTGCGATACATGCATGTATATGACAAGTATTGTCCTGAA TTAGGCAGTCAATATTACTATTGTAAATTTTTTTTTGTAAATTCAATTTTCAATAATAATATATCTTAAT ATGGATCTTGAAGCAAATACATGTGTATTAACCATGTTTTGCCTAATTATGTAAAGCTTTTTATATTTAA ATATCTATAATGAATATATCAATGACATTAGGGTTTGTGCTTTAGGATTCATTGTTTAATTTTGTAGTCG GTTTAAGTTGGTCTCAAAAATTATGCTGCATTTACATTGTACAGTATTATATTTGTATTATAGTTTATAC AACAATACAACATTGCCTGAACCGAAGGTGAGGGCGATATATTCATGTATATGACAAGTATTGTCCTGAA TTAGGCAGTCAATATTACTATTATTAACCACATCAGAAATCTAGAGCAAACTAGAAATCTAGAGCAAACT AGAAACTTTTAATATCTTATATATATATATATATATATATATATATATATACTCTTAAATTATGTAAAAT AAGTAGCCTACACTGCACAGGGTTCCCTAGCATGAAAAGTTGCAAAAACATTGTCAAACCAGCACTGCAT GTGCATCCAGTGCTTGACGAAATTATTGATACACTGCAAACAGTGTGTCTTGGGTGTGATTATTACGTCA CAAAGTGCGCAGGTTCTCATACGCGTAATAGATGCGCAATGAAAACGATAAAATACCAGGATGTGGACTC TACATTATTGCCTGCTAGTTTAACACGCATTTTGCCATTTACTTTTCTGATTGGGCAATATTAGTTCATT GGTTAACTGTGTATTATTATTACCCGTATCAGACATCTGAGCTGGTCATTTGCAAAACTGTATTGCCCTA GTTTTCCTTAGCAGAGGGAACGGAAGGCACACTGTTTGCAGTGTATCGAAAATTTCGTCAAGCACTGCTG TTTGACAAAGTTAACTTTGTTCAGTTCTTTGACATGGTTGATTTATGTATTTGCTCTAGATGTCTGATTT GGATAACAATACAAATATTGACTGGCTTAACTTTTGGTAGATACCACATATACTGCCCTCACAAGATCCA TATTGCCCTCGTCTTTGACTCAGGGCAATATGAGTCTAGTTTGGGCAATATATGTGGTATCTCCCTCAAG GCCAGTCAATATTATATAATTATTGACCTGCAAATTTCACACAAAATTCCATTGACTTTGCTGAGCGGTC AATAATATTTTTCTCGCCCATAGTTTTGTTGGCTTATCAATTAAACTTTGAGGGCAATAACATTTAAAAA TTGCCTTGCTCAGATGTCTGATACGGTTAATAATATATATCATATACCTCTCTTTATAAATCAAGCCATC TGATTGGTTGAAATTGCAGTCATTACATTTATTACATTTATAGACTTGTCTATCGTCGGTCGAAATTCAC TTCAACTGCACCTCTTCTGAGAGAACTCCACTGGTTGCCAGTCCGTCAAAGAATCTCATTCAAAATATTG TTAATTGTCTATACATCATTAAATGGTCAAGCCCCTAATTACATCACAGAATTACTTTAACTCAAAGTCC AGTCACACAGTCGTAGCCTGCGCAGTTCCACAGATAAATTATTGTTTCAGATTCCCCATGGCAAAACTAA AGTAACTCTTGGGGACCGTGCTTTTGCTAATGCTGCACCCAAACTATGGAATAGCTTGCCAATAGAAATA CGAAGCACTCCATCTCTCAATGTTTTTAAATCCAATTTAAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds