Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>NM_001124763.1 Strongylocentrotus purpuratus voltage dependent calcium channel L-type (LOC578128), mRNA ATGACTTTTGCCGGAGAAAGTCCGGTCAATAATGCTGCTTCGGCAGGGACTGGCAGTAGCGGTACCTACG TTACTGGGACCGTTCCTCTGTCTCGCCCTGGTCCAACAACCAGGCCCCCGGCAGCTGCAGGCAGCACCAC CACCCCAGCTGTTGCTGCTGCTACCACAACTACCACAGCTCCTCCCAGCAACAACGCAGCTGCAGCGCCA GACCCACCTGGTCCAGACCAGGACGGGGCAGTCGCAAAACAGCCCCTCAGTAATGCTTGGGTTCAAGCCT TAGCTGCTGCCAATACTGCCAACAGCATGAAATATGGCAAGAAGAAGCAGCACATTGGGGCGCCCACGCG GCCCCCAAGGTCGCTCTTCTGTCTTACCTTGGACAATCCCATGCGAAGGATGTGTATCAGCATTGTGGAG TGGAAGCCATTTGAGTATTTGATTCTCATCACCATCTTTGCCAACTGTATCGCCTTGGCAACATATACAC CCTTTCCCAAGCAGGATTCAAACGATGTCAACAGAAATTTGGAATACGTCGAATATGCCTTCCTCATTAT CTTTCTGATAGAGGCTCTGCTAAAGATATGTGCCCAAGGCTTTCTCTTCCATCCAGGCGCGTATCTACGG AACGGATGGAATATATTAGATTTTCTCATCGTAGCTGTAGGGGTTATAAGTACAATTTTATCGTTAAGAA ATGTCGAGAACACCAATTTTGATGTGAAAGCTCTCCGCGCCTTCAGAGTATTCAGGCCTCTACGTCTAGT TTCAGGGGTGCCAAGTTTACAAGTTGTTTTGAATTCCATTTTCCGTGCCATGGTGCCCCTCCTCCACATT GCCCTTCTCGTCATCTTCGTCATCATCATCTATGCTGTAATTGGTCTGGAGCTCTTCATGGAGTATATGC ATAAAACGTGTTATTTCAAAGACACATCCATAATAGCGATGGACGACCCCCATCCGTGTGGGAACGGATT CAGGTGCACGGACCTCCTCGAGGTCGGTATCAACAACACGGATTGTTTAGAGAAGTGGGAGGGTCCAAAC GATGGCATCACCACGTTTGATAACATCGGGCTTGCCATGCTGACCGTGTTCCAGTGCATCACCATGGAAG GGTGGACGGACATCATGTATGACATCAATGACGGTGCTGGTCCCTGGTGGCCGTTCCTCTACTTTGTGAG TCTCATCATCATTGGTTCATTCTTTGTCCTCAACCTGGTTCTTGGTGTCCTAAGTGGGGAATTCTCCAAG GAGAGAGAAAAGGCCAAAGCAAGAGGAGCGTTTCAGAAGCTACGAGAGAAGCAACAGATAGAGGAGGATC TCCGAGGCTACTTAGACTGGATCACACAAGCAGAGGATATTGATCCTGATAATGACAGTGAGCAAAACCC AGTTCCCAAACCTATTAGCGAGTCTGATTCAGATGATAAATCAGAAGAAATGGGAAGCAGTGAAATACCT CAGCAACAATGGATGCAGAAAGAAAGGCGTCAACTCAGACGATGGAATAGAAGGTGTCGTAGGTTATGTC GGCAGGCAGTGAAATCGCAAGCATTCTATTGGATCGTCATCATCATGGTCTTCTTCAACACAGTGATCCT AGCCTCGGAGCACTATAGCCAGCCTGCGTGGCTCACAGATTTTCAAGACTTTGGCAACTTGTGCTTTGTG GTCATCTTCACGATTGAGATGATAATCAAGATGTACAGCCTGGGTCTTCAGGGCTACTTTGTGTCGCTCT TCAACCGTTTTGATTGTTTTGTGGTGTGTAGCAGTATCATAGAAGTCGTCTTCATCTATGCCCATATCAT CCCTCCCATTGGTATCAGCGTCTTACGCTGCGTCAGACTACTCAGGGTCTTTAAAGCAACCAGATACTGG ACAGCGCTGAGGAACCTGGTTGCATCCCTCCTGAACAGTATGCGCTCCATCGCCAGCTTGCTATTGCTTC TCTTTCTCTTCATCCTCATCTTTGCTCTCTTGGGAATGCAAGTCTTTGGAGGCCATTTTAACTTTGACAG CACCAAGCTCAAGCCTCGAAGCAACTTTGATTCCTTCTTTCAGTCGCTCTTCACTGTGTTCCAAATCTTA ACTGGTGAAGACTGGAACGAGGTGATGTACGATGGCATTCAGGCTTACGGTGGAGTCAAGTCAATTGGAT TCCTTGCTAGCACCTACTTTATCATCTTGTATATCTGTGGTAACTACATCCTACTCAACGTGTTCTTGGC CATTGCCGTGGACAACCTGGCCGATGCCGAATCCCTCACAGCCTTAGAGAAGGAGAAGGAGGAGGAGAAG AGGAACAATCATCCGTGGACCCAAGAGGTTACAGGAGAAGAGGAAAGCTATGAAGATGACAAAGAAGAAG AAGAAGCAGAGTCTCTAACAACAGCTTCCGCTAGACCAAGGAGGCTTTCAAATATCAACATACCCACCAA AACAAGACCCATACCCAAAGCAAATTCCCTTTTTGTATTCTCCAACACAAATAGATTTCGTCGTTTGTGT TATAACCTCGTGAATCATCCTTATTTTACCAATGTGGTGCTGGTTCTTATCCTCATAAGCAGCACTATGT TGGCAGCTGAGGATCCACTCGATGAAGATAAAAGGAGAAATTATATATTGAGCCTTTTTGATTACGGATT TACTTCAATATTTACAATTGAAATTCTTCTAAAGGTTGTTGCCTATGGACTTGTTTTCCATCAAGGTGCC TTCTGTCGTAACTCTTTCAATTTATTGGATCTGCTAGTTGTAACTGTAGCCTACATTTCAATCATATTCG ATGATACGAAAATCTCTGCAGTGAAGACTCTGAGAGTTCTCAGGGTTCTTAGGCCACTTCGAGCTATCAA CAGAGCTAAGGGGCTTAAGCACGTGGTTCAGTGTGTGTTTGTGGCCATCAAGACGATAGGGAACATCATG CTCGTTACACTGCTCCTAGTCTTCATGTTTGCCTGCATTGGGGTGCAACTGTTCCGTGGAAGATTCTTTT CCTGTAACGACTCCTCGAAGCTCTATGAGGAAGACTGTCAAGGTCATTATTTTGTATACAAGAATGGAGA CTTGGATCAAGTATCAGTTGAACAGCGTGTATGGAGTAAGAATGAATTCCACTTTAATGATGTAGGAAAT GCTATGCTGGCTCTCTTTACCGTCGCAACGTTTGAAGGTTGGCCAAAGCTTCTGTATGTGGCTGTAGACT CTACCGAGGATGATAAGGGTCCCGTACACAGCTCTCGCATGCCTGTAGCGGTCTTCTTCTTTGCGTACAT CATCGTCATCGCTTTCTTCATGGTCAACATCTTCGTGGGTTTCGTCATTGTCACCTTCCAGAATGAGGGA GAGCAAGAATACAAGAATTGTGAACTAGACAAAAATCAGAGAAATTGTCTAGCGTTTGCCCTCAAAGCAA AACCTGTGCGGAAGTACATCCCCAAGAATCCAAAGCAACATTTAGTTTGGAAGCTTGTCACGTCTCGGGC TTTTGAGTACTTCATATTTGTTCTCATCATGGTTAATACCATTATTCTTGCCATGAAGTATCGCACACAA ACGGAAGCCTACAAGAATGTGTTGGACTACATGAACATTGTGTTTACAGCGGTTTTCACCGTTGAGTTTC TACTCAAGATCATTGCATACAAGCCCAAGAATTACTTCCGGGATTATTGGAACGCGTTTGATTTCATCAT TGTGTTAGGGAGCATCATAGATATAATGATTGACATGTTTAGTGCGAATGAGAAGAAGCAGTTCAGCATC AACTTCTTCCGGTTGTTTCGAGTCATGAGATTGATCAAGCTCCTAAGCAGGGGAGAAGGAATTCGAACTC TGCTGTGGACATTTATCAAGTCTTTCCAGGCCCTGCCATATGTAGCGTTATTAATCGTCATGTTGTTTTT TGTATATGCTGTTATTGGAATGCAGATGTTTGGTAAAATCAAGCTATCGTTGGATGGAGCTCTAAATCGG AATAATAACTTCCGTACATTCCCCACTGCTGTAATGGTGCTATTCAGATCAGCTACAGGTGAAGCATGGC AACAGATTATGATGGCATGTTCACAATCACCCAAGGCACCGTGCCAAAGAGATGATACAGAGATATGTGG CAATAATTTTGCCTATGTATATTTCATCTCTTTCTACTCCATCTGTTCATTCCTGATCATTAATTTATTT GTAGCTGTCATCATGGATAATTTTGATTATCTAACACGTGATTGGTCGATTCTAGGACCACACCATCTAG ATGAATTTGTCAGACAATGGTCAGAGTTCGACCCGGACGCAACGGGTCGTATCAAGCATTTAGATGTAGT GACGTTACTACGCTCCATATCCCCTCCCCTAGGTTTTGGGAAACTTTGCCCTCATAGAATTGCATGCAAG AGATTGGTGACAATGAATATGCCGCTCAATAGTGATGGTACCGTCATGTTCAACGCTACACTGTTTGCAC TCATCAGAACATCATTAAAAATAAAAACAGAAGGTAATATAGATCAGTGTAATGAGGAGCTAAGAGCAGT CATCAAGAAGATTTGGAAAAGGACAAGTACTAAACTCTTGGACCAAGTTGCTCCACCAGCAGGGGCCGAT GATGATGTGACAGTCGGCAAATTTTATGCAACATTCCTGATTCAGGACTACTTCCGTCGTTTCAAGAAGC GCAAGCAAGAGGGTTTGAAGATCCCGGGACAACCAGACAGCACCTTTGCACTTCAGGCTGGATTAAGAAC TCTGCATGAGATTGGACCACAGATCAAGAGGGCTATATCAGGCAATCTGGAGGGCATGGACGAGAATGAA CAGTTCGAGCATGATGAACCAAATCATAGGCGGAGTCACTCGTTATTTGGCACCGTGCTCAACATGTACC ACAACCGTCGTCAGTCCACCCCCATGGCCAACACCCACTACCAGGGTCGCGACCCCCCTCCAGCCTACTA CCCTAACAACGCCACCAACAACCTGGTGAGCTCGCCTCCGTCCAACCAGCACCGCAAGCTGTCTCCAGCG AACAGTCTCAACAACTACAACCACAATCCTCAGAACAAGTCCCCGTTCAACATGTCCTCCTCCAAGTCTC CTTCGGCCATCAGGGGACGGGGCGGACCTTACTCCCCCAACGCCAACTCCCTGCAGGTGTCCTCGCCCCA TACCAGAGGCTTCTCACCGGTCGGTAACAGGAATCCCGGAGGGAGGGGCATGCCCAATAACAGAGGGCCT GGCAATAGATATAGCACAAAAGAAGGCAGACAACCCCTCCTCCAAAATGAAGATCGTCATCACCACCATC ATCATAACAACAATCATCATCACTCTCCCGATTCGCCTTATGATGATGATGATGTGGAGGAGATAGAACC CAAGGCTCCATCTTCACCACAGGTAGTAGATGAGGAGTATCAACCAGAACCATACCAACAGCCTTACAGA GAACCCTATAGGGACTACTCAAGGGAACCTCCCACCCTAAGAACAGAGTGTTACCAGGAGGAAGATGAGG ACAACCTTTCAGAGACCTCATCTCATCCTCCTACCTCACCCCTTCTAAGCCCTCAACGATCCCCTTCATC ATCCCGTGGCCACAGCCCTACCCCACCCCCACATCAGAACTCCAGTAACCACCCCTCCTCCCCCTCCCCG ACCAAGCTCACCCTGGACTTCTCCACGACGGTGCCATCACCTACCGAAACAAGTCTTCCAAAGCTTGAGG GTGAGAGTATAGGGAGCCGCAGTGTGACCCACAGTCCCCGCAAGTCACCTGCCGGTTCACCGAGCAGACG ACTGTTGCTGCCCTCTGGCAAATCAGATGGTTTAGTGCCTGCAGGGGATCGCAAGACGGCCGTGCCTCTC AAGCTAGCTCAGGCACAGGTCATGGCAGTGGCCGGTATGACACCCGAGGGCAAGACGCGCAACTCGACGG GACGAATGTGGCTCACACCCCCCTCTTCCCCACGCCGGATCCGCTCCTCCCTTCACACCCCTGCACCCCG CCCCACCACCCAGAGCTCTCATCTCCTCCCCACCACGGGATCGACGTCCAACTCGACGTCGACTCACATG ATGGTGAAGGAGCCTCTGGCGCAGAGGCACTCCACCGGGGAGATCGGGACGTCGCGCGATCCCTCTGCGG CATTCTTCAAGTCACTAACCAAACCTAAGACATCTGTGCCTAGAAATAACCCCAGTCCAGAAGAAGTAGC GGGTAGTGCAGAGAGTTTAGTAGCTCAGGTGCTAGCAGGGGAAGGCATCTCGCCCATTCGTGACAGGGAC CTAATCAACATGGCCGAACGTGAGTTAGCCGAAGCCTGTAACATGACCCAGGCTCAGCTGGACTCTGCTG CCCATCGCATCCTCTTCCCAAAGGACAAGCTGGCCAACGTCCCCGTCGTAACCACGACGGTCACCCAGGA CACCCAGCTGCCGTATTTTGACCATCTGGGCGGCTACGAGCTGCGGGACTACACGCGCAGGTCGGGGGGT CACGATCGGACTAACGATGATGACGATGAGGAGGGTGGAAGGCGGGCGGGGCGCGAGGCAGACAGCGATA CAGAGTCGGGAACAATAGAGGCTGATGAACATGGGGTGCTCTATGTGACTACATTATAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds