Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT108368.1 TSA: Strongylocentrotus purpuratus WHL22.389472.0 mRNA sequence TATGATAACGGTCACTCCTTCTCTTCGTGACACTGAAATAACGGCCATCGCATTCTATAATTTATCTGAA CGGCTGGCTCTGCCTAGCCTATTCTACTACGATATCCGCGGAGAATACCTATCTAATCTATGTGTGTGAT CGTGGATCTTCGTTCTTCATTCATTTAGGATCTCAAGTAGAATCAGAAACTGCATGTAAGCATTCCGGCG CTGCCACCTAATTTCGGCACATTTCCCCATAAAATGTGGGGATTATCGTCATGTTGTTAAGCGGTGATTG TTCCAGCGGTAGTCGAGTGGGATTCCCCGTCTTGTTGCGGACATCTTCTTCAAAAATCGCCTTTTATTCG CAGACAATGATGGTGTATTTTCCCGACGCGACCTACGGGGACTACCTGGCCGTGGGTTTGGCTATCGTAT TCCTTGCGTTAGCAGTGGCACAGGTTTTCTTTCATTTTGTTGGAATATTCTACGTGAAACTATGTATGTA CAGAAAACCAACGAATGTTCTCCGAGATGAGATGCCTGGTGTATCTATTCTGAAGCCTCTGTGTGGTGTT GATTCCAACCTCCAACCCAATCTGGAATCCTATTTCCAACTCAGCTATCCACGGTTTGAACTGCTCATCT GTATACAAGACGAAGAGGACGAGGCTATAAAAGTTGTTAGGCCGCTCATGGAAAAATACCCTCATGTAGA CGCAAGATTATTTATAGGTGGGTCAAAGGTCGGCATCAACCCAAAGGTCAACAATATGCTTCCAGGGTAC AAGGCATCGAAGTATGACATCATCATGATCAGTGATAGCGGTATATCAGTGTCACCAGATACTTTAACTG AAATGGTATCAAGGATGTCACCAACTGTGGGCATGGTCCACGGCCTGCCTTTCGTCCGTGACAGAGCTGG TTTCTCGTCAACGTTAGATAAGGTTTATTTTGGTGGAGCACATGCCCGGATGTACATAACGGCATGTGTT TTTGGAGTAAACTGTGTCTCAGGAATGCTCAACATTGTTAGAAAATCAATCTTAGAAGAAGCGGGCGGCT TAGTAGAATTCGCCAAGTACATTTCTGAGGACTATTACATGGGTATAGCTGTATTAAAAAGTGGATTTAA GCAGAGGCTGAGTTTATTTCCTGCAATGCAGAATTCAGGCAGTGCGTCATTAGCATCATTTAGGAAAAGA ATGGTCAGGTGGACCATGGTTAGAATAAGCACAGTACCTGTCACGCTCATAGGGGAACCCATAATGGAGT GCCTGGTGTTGGGCGTGGCTGTCTCATGGGCGGTCTACCACCTGTTCAGCTGGGATCCTTGCATCATCTT CATCTGCCACACCCTTCTCTGGTTCATCCTGGACTACTTTCAACTCAAAGTCCTCCAGCGAGGTCCCCTG AACTTCACCAAAGTGGACTATGCATTGGCCTGGTTCTACCGGGAGATCATGTTCATCTTCTACTTCCTAG AGGGCGCTCTAAGCCAGACGGTCACATGGCGGACGGGGACGTATCGTCTCCGGTGGGGCGGGTACTTGGA AGAATGCTGACACCAAACCTACGAATCGTTGTAAGAATGCTGACACCGAACCTACGATCCGTTGTAAGAC TTTGAATGAACAGAGAAAAGACGGTGCTCATCGACTGAAAGCGTTGTCCGCAGAGGTTCCAAAACTTCTT CACCCGGTACCGTTTCCAAAGAAACATTGTGCAATGAGGGCTGTAATAGTTTTAGTATGGTTGTGTTAAA CTCTACAAATACGCCAATTCTGTGTTTGGCATGAGACATCAGTATTGTCATACAATGAGAAACAGAAGGA CGTTAAATCAGTTTCATTTTTTTTTCTTCCAATCAGTGTATATATCACAATACATTTTGTCTTACAGTGA CATACAGAAAGGCATTAACTCAAGTTTGAGATTTTTGAAGTATCATTCCCATCGTGCCCATCTGATTTTA GTAATATAATGTTAAGAATGATTTGCTCATTTCTATATCGTCAGTTTTGGGCTAGAATGGTGTTACTTCA TAGCATTCAATGCCAACTTAATGACAAAGGATAAAGGTAAGGCTTTGAAAGGCTTCAGCTACAAAAGTGA TCCATTTGTCTGTTGGTATTCAAGATCCAATCCAATCCAGGAATTAATAAAGCGCCAATATCTAGTTGCC TAATCAAAGGCGCTGATGAGACTGAAAAACTACCAAAAATTTCTGTTCATGATTCTAACTTGGAAAGACA ATTAAGATCATCCAACCATTTTCATATCAAATTACTTCAATGATAATCTTCCTTAAGGAAGAAGAAAAAA TAAATTTGAAGCTCTCAGTTATTTGTCAGCTTTATCAGTACTCACATGTCTCTTAATAAAAGGAATATTT TCACTTCAGCAGCCACAAAATTACAAAGATGATTCCCACGGCTTTCTTGCATGACAAGACATTGTACCCT TTCAGCTCCCGCAAAGGTCTTCAGAGGCGGGTTTGCTCAATTGCTAAACCATCTACCCGTCAAACCAAAG ATCATTGGTTCACATCAAGCAGAGGCAGAGGATTGAAAACCTTTGGGGTGTGTGAAGCTGCCCCAACATT TGTTCATAGACACACGCTAGGTTGCAGTGGGAACAGGCTCTGTCCCTCGGATAGGACTTTAAATGGAGGC AACGTGCGGGAGAAGTGTCACCACCCTAAATACATGAAGAAGTGAAGAACTCACTCACTCCCTAGAATTG GGGAAACCTGGGACACATTTCACAAAGCCTTTTTTTCAAGGACAAATGACAAAACTCAGTGACAAATCTG CTGATAACCAATTAGAAGCAAGGATTTCAGTAGCTTATAACAAAAACTGTCATTTGTCACTGATGACAAG TTTTGTGAAACACTCCCTGGTGTAGCGGTACACCTGCACATCCCAATCAGCTGTACAGGGAGGAAAGACC TTGGGGTCTCAGTGATTAAAAGATGAAAGTTGAGTTTAGGGCCCCGTCTTACAAAGAGTTGCGATTGATC CCAATCAATTGCATTCCTACAATCAATCGCAAGTTTGCAGTCTCCTATCTCTTATGTACATAGTTGAGAT TGATATCAATTGCAAAGAAGTTTTGATTGATATCAACTCTTTGTAAGACAGGACCCTGGTCAAGCAATTT CTATGTGAAAGAAGCAATTGGGACATTGCAACATTATATAGCACATAGAGATATGTGTAGATTGTGAAGT TTTGAAATGGTCAAAATGACCAGAAACTTACTCACTCCTCCTGAAAGCTCTGTGCACTGCACACAGGAAT GCATCTATGGGACTACACAAACTTGTGGCATTGAAGTTTGGTCCAAAGCTTTCAGCTGTTTCTCGTAATA TATCGTACAGCTCCTTCTTCTGGATTCAGGACTTTGTAATATGTGACCTCATGGTTTTCACTGTGCGTTA CGTTATCTTCAAGCCTAAGTTCAAGGCTAAGTACAAGGTCAGTACTGTACTATACAGTAAAGGTGAATCA AGTATCAATCAAATATAAAGTGTCTTCAGGGACGTTGTGGTAACTTGTTGGAGTTTTTCTGTAAATCTAT ATAAATCTATGAGAGAAATTTATCTGTGAATAATAGTTTATGGAGGTAGAAAAAGTTTAAATGTACTTCT AGCTCATGAATGTAGACTCATTTTTGGTCTAGACTTTGTTTTAAATCTTAATGACTTTTTACTCTATGTC GTCAGTGAAGCTTTGGAGTAACATTTTGTTTGTTTTGTCTAATGTCGGGTTATTGTTGGAAACTAGTAGT CTTATTGATCAGTAATAATACTTGTCTTTACTACAGGGTAGATTCTAGTGCTGATGTTGATGTTCACAGT AGGAAATTGGATCTTCGTTGATAACAATGAGTTGGCAGAGTTGTCCAGTCAGCTAATTTTGGAAAAAGAT ATGATATAGGAGGCAGTTGTTCTTCTTAAAATGACTATCAAGCTTATTGGCACATGCTTTCAGAGAGTCC TGAACAAGCGAAGATCGCTAGATATGGTAAAAATAATTATCCTAAATTTGTAAGTTTGTTGACTCGGTTT TGTCGATAGTGTTTAAAGCAGGAGGACTTCATATTGACATGTAGACAGAGAAACCGAGATGATTACCGCA CAAGAAAGTTCATCTTTAATCAATGTATCTTCATGTTCATGTTATGTCAGTGTGGTGTCTAAGACGTATT CACCCACCTTATATATTCACGCTTGCTATGCTATAGCATGCAAGTTGACAATGTAACAAATGTACAATCC ATCTTGTAATGCATTTGTCACTGCCCTGTAGTCATGCGTTATCTTCATCCTTTTTTCTCTGTGTGTCTTA TCATCTCCTATTAAATTGAGCAGTTTCTTGCCAAATTCCTATTTAAAGTCATTACATGGCCTTATTGTAC ATACATGTATATGTATCTATACTTTATTTACCAAATAAGGTTCCCTGATCTGTTGGGCAACATAGTTTAT CCATTTTTAAAATTAGAGAATCTTATACATAATACACTTAATAGATGACGTTTCAAATGCATTACAATAT AACATTCAAAGGTGTAGTGTTTAAAATGTGAAACTAGGAAGTTGAAAGAAATTTTAATCATAATAAGCAA GAGAAATTGATCATTTAATCCAGGAGTGTAATTGATTGCAATTGCATCAGCTAAGGTGAGAGATGAGTTA GATGGATGGGTCTGTGGTTATTGAGGGGTTATATGAGAACGTGTTAATTAAGAATAGGGGATGTTTCACA AAACCTTTTTTCAATGACAAATGATACAAATCAGTGACAAATCTTCTGATAACCAATCGGAAGCAAGGAT TTCACTAGCTAATAACAAAAGTTGTCATTTGTCACTGATGACAGGTGTTGTGAAATGGGGTCCATGTCTA TGGGCAATTCCACATTATTTTGTTCTATACGTTGCAGACCACATCCAAGAGGTTTACGTGTGTGATGATC GTGTTGTGTACAGTGTTGATTTAGAAACCATACAAGAGCTTGGATCAGGGACCCATTTCACAAAGCCTTT TTCAAATGACAAATGACAAAAATCAGTGACAAATCTGTTGATAATCAATCAGAAGCAAGGATTTCAGTAG CTTATAATAATAACTGTCATATGTCACTTGTGACAAGTTTTGTGAAACGCCCCCCAGGACCTAAGGCTAA GGTCAAGTGAAATGATACTTTTGATAACAAAAAACCTTGGATATGCCCCTTTAGATGTTGTCGGTTTGGA GCCAGAAGGGTGCTAACTCATCTTATCTACTTTAACACAGAGTTAACATCCTTCTGGCTTTGAACAGACG GGAGACACTGCATAAGATACGGTTAAGGTTAAAGTTGAAGATATCAACAGAAGGTTATTAAACTCCAACC TACCTGCACATATCCCCCTATACTCAACTCATGTATGCTCTTCATCATATCATATATAATTGTATTCAAT TATCTATTTAGTTATTCAATTATTCAATAACCAAGCATGCTACATGGACTGGTTTAACCATATTTGATAC GAAGTCGGCAACAATTCGCTGATATATGACTCTCAAAATATGGATATTAATCATCTTATGCGCAATCACA GAGACCAATGTAAATCTGAATTATTTAACCTCATATGTTTAATGACATGATACCAAATTGACAAATGTGT AATCAATTTTTGCTTATTTCAACCCAGTAGTACTACGTTGTTATACATTTTTATTTATCTTAGTTGTGAG TAGTATGTTGTCTTTCATTGTGCTATGTGATACTTAGATGTGATTTGTAAAAACGGAGGTTCTGCTAGGG TACATGATCAAGGGCCTATGATGGAAATTGTGCCAAATGGCAAAAAAATTGAGAAAATTTGAAGAGGAAG CTTGTAGATTACTTTGGTAAATGAAGCTTTTTTGTAGAGCTAGAATACTTTCCTTACATTCTTATACCCT TGGGATTGTTCATATTTGAGTGGATTACCGTGTACTTTCTATAATGAAGTGCTGAATTATTTTGTTTATC GTTGCAAAACCAATTTTTAATTCTGGCATGCCCCCAGGATCCCTTGTTCCCTGTTTTGCTATGTAATATG CATCCAGCCACTGGGTTCAGAGGGTGGGGGGGGGGGG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds