Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038194124.1 PREDICTED: Patiria miniata uncharacterized LOC119723459 (LOC119723459), mRNA TTTTGAATATTTTTAATCGCCTGGCAGCGAAGTAAACTTCCGATCGCTGACCGTGAAAAGGGGCATATTG TCCACATCTGTAAAGTTGAATGAGTGTATGACGAACCTTAAGCAACATGGCGAGCCTCCGGCCATTCAAT ACGTCCACCAAGGATGCAAAATCCTTCAAACTCAGGAATCCTCAACTATCTTCCAAAGACACGGAGCGTC TGGACACCGATAACTACAAGATGGAGGCCAGACTGAGGGAGCTGAAACTGAGCATGAGGCGACAGAAGGA GGAGAGGGAAAATATGAATTCGGATGGGTCTATCTGGTCATCCGGTAAGCCGGGAGCTGTCACAACGCAC GGAACGGACCTCATGAAGAAAGAACCCAGCAAGCCAACACAGTCTAAAGGAAAGGCAAGAAAGATTAAGG TCCTCAAAGATACACCGTTGGATCTGCCAAAGCGCGCCCCAATTGCTAGGTCTTTCACCGAAGCTAGTCC ACCGAAGTTTAAAGGACCGGCCTGCGGCCAGTGCGAACAGAAAGCTGTAGCCTTGACGTGTATGGAGTGT GTGGAGAATTACTGCACGACATGCTTTGCCAAATTCCACATGAAAGGTGCCCTGAAAAACCACCGCTCCG TACCATTCCAGACTAACCGTAGCTCATCCAACTCCAGTTCCCTCGATCTAAGTAACGGAATGACGTCATC CCCAAATAGTTCAATAGAAGGCCTACCCCCAAGGCCTTCCAGTGCAAGCCGAAGGACCACGACGTCAACA GACACCGCCTCTGAACAGGTCAAAACTGTCTCCATCAAACTCAAGGATCCAAGCGAGATGGAAGGAGGAG CCTTTCTTCAAGGCACATTCAGTGAGGAAGAGAGTGCTCAATCCTTTGCTCAGGCCCTGGCAGAGTGGAG ATCTGGCAAACAGAACGGCCCGACTGAGGCTAGTCAGAAACAGGAAGTCAAGAAAGAGAGCATTGCAAGT GGCACCACAACTGAAGAGCCCCCGCCCATCGAGATCAAATTCCAGCAAGATACGTCCATCACCTACGCCG ACAAACTCCTCATCAAGAAGCATCGACGCACTGAGCTGTCCCCCTTGCCTTCACCTCGACTCTCTAGCGA TGGTGAAGAGGAGAAACGCTCACCGAGGCAGGGAAAAGAGACGCTGACAAACGGCCATGTGGACAACTTA TCAGATGATGAGAACGAACTGCAAGAAGAGCATCAACGTTACGTTGGCATCTTCAGTAAATCCATATCCC CGAGCGAACCAAGACTGGCTAGTGCCCTGTCCATTGTTGAAGTCACCGAGGCTCAACCAAATGAAGCAAT GGCAATGGAAGTCGAGTCGGTGTACAGTGTCCAGGAGGTGGATGACTCCAAATCACAAGGTCTGGACCAG TCTGCAAGGGGGGATCGTATCCACACATCTAGCAACCGGTACAGCCCAGAGATGCCACAGGAAACTCAAA ACACGCAGTCAAAATCCCTGACAAGCCCTGGCAAGCCCAAGACTCCTGGTCCGTTACCTGCGAAAGAGAA GCAGCAGCAGGGTCCAAAAAGCGGCAACAAACCAACAAAGACTGTATCAACTCCGATAAGAGGCACACCA GATGCCAAGCACCCCAAACAGCAGCGCTCGACGCCCCAACGACTGGACGCCTCATCGCGACTCGCATCAG CGCACTCCACTGCAGCGAAACCAGAGAAAATCCCATCAAAGCCAAAATCCAAAAGCGCAAGTGGGACGAT ACAGCGTAAGCCGCTAACCAAGTCCTCAGAATCCAGAGATGTCCATGAAAGCATAACGCCAATTGCTTCT GACGATGCGTCAGGACGGGTTTCTGGACTGACAAGCACCCCATCGGGGGAGCTAATGACAGCCAGTCATC TCGTCAGACAAACGCAGCATCACTACAAGGCCGGTCTCGGAGATTTCTTCCTGGCGGGCCTTGGAAATGA GGAAGGCGAACCAAAGAATGAGGTGGATGATAATCGGGAATCGACACCCGTCAACAGGCTACCAGACTGC TCCTATAAAGGTGCCTTATCAGCATGGCGCCCAGACAGCAGCCTGGCAAACCCCGCCCTCCAACAATCCC TCAAACCCTTCTCCCCCTCACCCCCGCCCAAGAGCGGTCGCCAGGCCCACCGCAGCGCTGCCAAGTCCCG CCTCGTTAAGTCCATCAACCAAGACAACTCAGATACTGGGGTCCGAGGTCAAAGTGCAAAGGTCAAGGAG GAGAGGTCAAGTGCCAAGCCTCGCCCAGACGCTGATAACACTATCTCTTGGATGCTAAGTGAGGAACTGT CGAAGAGGGGAAAGGGATGGAACAATAACAACAATGAGAGGAAGGGAGATGGAGCACCTGGGGCTGAGCA GGCTAAAGAACCTGATCGAAGCAGCAGCCGCATAGAGGTCGATGGTGATGACATGACCGTCTACGACAAC GTGGGCAGAGACGATACAGAGATGGCAGATCAGGAGACCCTGGAGCAACTGACCTGGGAATTGGCCTCTC ACTCTGGTGGCGTCACAGCTGATGGTCGCCTGACTAGCATGAGCCTTCCCGACCCAGACGATGACCACAA CGATGACATCTACCGGGACAACAGCTTCAGCCAAGACACAGAGCTGGGCATCTTAGAAGATGACGGCATG GGATCGGGGCTGAGCACACCTTTTGACTTTGTGACGGGAGAGAGTATCAGCCCGGAGGATAAGAAGGAGG ATGCTGATTTCTTGGAGATGCAGAGATACACGGCCGAGGTGCAGGCTCTGATTTAGCCCTACCACTCCTT GATCCAAACAAGAGGTTGGGAAGATTTTGAAGGATGACCGCAACATTTTAGAACTGAGCACTATCTATGA TCTCTCTGAAGGACTGAAGAGGAAGGTGTGGATAACCTTGGAGGTGCTGAGATGCAGGTCCTGACTAATC TCCAACACTCCTGAACCGTCAAAAGCCGCCAGGACATTTAGAGCAGCGTGTAGCATCACAGTGGGGGATA GGTGCCGAGTACACCTCAGAATTTTCCGACGGGAGAGCATCGGAGGATGCTGGTTCCTTGGAGATGCAGA AGTACACAACTACGGTGTAACCCAAACTTTGCTTTAACTTTCCTTTATCCTTCAAAATTATGTAGGACAT TGGCTTGGTTACAAGGCAGAGGATACCTTTTTATCACTTTGAAAGGAATGGAGGTATTAGGATACAATGG ACAAAGTAGGGCCAACTGAACTACTTGTACAGGTATGGTATTCATTTGGACATGTATCACAGTGGACTAC CTGCAGGAAGTTCAAACTGGAAATATAATTAGTTTATTGCAATATGCACTTGGTTTTCCAAATTAAATAA AATGTACATAGGTGTTTATAGATTGTATTTGTTTAACATGTTGATGAAATTTATAGTCGGATTCCATCCA TTTTAATTATGTTTTTCTTTTCATTCCGTCCAATTTGTTTTCCAAGGATCAGCTGTATTATTGAATGGTT GCTATAACATGTATTGTTTATGAAAAATTGTGTTATTACATTTACAAATTAAACATAACAAAGAGTAATG TTATGTATTATTCTTCCATGTTGTGAAAAAAATGGTCTAGAAAGTACAGCACATGTATGTGCTCTAGGTA TGCAATTAGAAATGAATTTAAAAAAAGAAAGAAAAATATGTGAAAAAAGACAACTGGACTCAAACTTAGA GATAGAGAACACTCCACTCTGAACCGTTTCCAAACTTATCTGGGTTGCTTCCTGATTTATAATGAACATA CATGTACTTAGTAATGAACGTATTTGTTTATTGTACAAGACAATCCTATGAATGAATATTCATAGCAAAA TAGTTTGAACAATGTATGTTTTTAACAAAAAAGGTTTTGAGTCGTAAAATTTATCTTGACGCTGATTAAT GTTAATGGTGAATAGAAAGAAAAAGTATCAATTTCTCAAAGTTTGTTATTAATGCATATCATTGTCATGT ATGGATAAAATATTGCACATGACCTATAAATATGTACACCTAAGTTACTTGCTAGTGATAACATGTTTAA AGTACATGTGCATGTAAAAGTAGGAGACCAATATAAATGTTAATCTTCCAGTTAATTCCTTTAGCAATGT ACACGTAGGAAATTGAATTCTATACAAATATAATAATCAAATCCTGTGCTTCGTTAAAATAAAAGTGTTG TATTTCGTGCGTGAATATAAACATACTCAACATAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds