Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030987245.1 PREDICTED: Strongylocentrotus purpuratus E3 ubiquitin-protein ligase TRAIP (LOC763774), mRNA AATGCCGACACGGTTACACTTACAGTGAACCTTTTGTCTGGTTATTCTGTTGGGCTTTCTTATTGTAACA TCGGCGAAATTCAAGCAAACAAGACTAGATTTTTGTGACATATAATGCCTGGCAATATTTGCCAGCTATG ATGAGCAGGCTCCCCCCAGGACATCATGATACCTGCAGTATGTTCAATCTGTGCTGACTACTTTGAGTCT GATCAAACCTGTGTCTCCTGTCCATGTGGACATGTCTTCCATGAACACTGCTTGTTGCAGTGGCTCGAGA CCTCCACCACGTGCCCTCAATGCAGACGTCATACCACATCAAGGAAACTCATCAAATTATATTTTGAAGT ACAGCCACCTGAAGATGGTCACCTGGATGCGGCGTCACTCAAGAACGAGGTGGGTACACTTGAAGTTGAT ATCTGCAGGAAGAAGAAGGAGATATCTGATCTTATAGCCGAGAATGCTCATAACAGTGACAGGGTAGTCA CATTGAACAAGAACAACAAGAAAATCTTAAAGAAGCTTTCGGATGAACAGTCTACAAATGAAGCGCTCAA GAAGCAACTTGATTTGATGAGCTACAGAATGGACGAGGCTAAAGAAGCAAAGCGAGAGACTAAAAGGCTA AGGGAAAAATTAAAATTTTTGGAGAGATTTGAGCTTGTAATGTCGATGAATGCTGACGTGGTTGATAATA TGCTGCGTGAGTTTGGAGAAGGACCCAAATCAGCCAGAGAATTAGCCACATATTGTGCATCTTTGAAAAG GGAATTTGAGAACATCAAAGACTCAAGGAAGCAGCTCAAAGAAGAAAATAGCAGTCTCAGGAAAGATCTC AACCAAAAAACAAGAGTGCTGGAAGTGAAGTCTAAAGATTTAGAGGCTGTTCAGCATTCTCTGGTCTCAT TACAAGATGATGTTCAGAGCTTAGAGAAGGAGAAGAAAGAACTCAGGGAAAGGTATGAGATGCTACAAGC AGCACTCAACTCACCGATGGATGGTGCCATGTCATCATCCCTCAAACAAGTCTTCACGCCCAGTAACATG ACTAAGAGGCCCAGACTAAGTGGTCCTGATGGAGATGATGATGATAGTATCCTCTTGGCTGCACCTGGTG ACCCTCAAACACCAGACCTAAGTCTACCTAGTCCCAGCTTAGAAACAAGAAACACCTGCAAAGACCTCGG CATTCGCTTTGTCAAAACTACCTCCCTAGCTGCCAAGATGAAAAGGCCTGAAAACATGGTGTCTGAGTCT GCAGTGTGGAAGAACACATTAGCTTCGTCTAGTCTGTTCAACAAGAGAAGAGCCCTCTCTGGTCGTAACG AGGGAAGTCTCAGGAAAGGTTACGACGGCATGGGTGGTCATGACAGATTTTCGGAAGTCGATCCAATCAT CATCAGACCAAACATGAAGAAAGTACCTCGAGGAGTGAAGAGGAAACCTTCAGGGAAGCCTTGTACCCAC GCTTTACCAACCTTGGACAGGTTCTTACCATCGTGAACAGGCGTCCTAATCTTACGATCCATGAGAGGAA ACCTTTAAGCAAAACCTTATACCCACGCTTTACCAACCTTGGACAGGTTCTTACCGTGGTGAACAGCCGT CATCTTATGGTTCATGAGAGGAAACCTTTAGGGAAGCCTTGTTCCTAACTCTTACCAACACTGGAAAGGT TTTCTTACCATCACAAACAGGCACATTGTGCACTTGAGATTTGTGAGTGGAAACTCTCAAGGTAACCTTC AGGGAAACTGTGTTTGCAACCTGTACCAACCCTGGACAGGTTCTTACCATCGTGAACAGCCATCATCATC TTACGATCCATGAGAGGGAACCTTCAAGCAAACTCTTAAGGAAACGATCAAGGAAACCTTCTCTTAAACC TTGTTCTCAACCTTTCCCAATCATTGACAGGTTCTTACCATCATGAACAGGCACAGTGTACACGTGTGAT CAATAAGATGAAACCTTTAAGGAAACCTTGTTCCTAACCCTACCAACTGGACAGGTTTTCTTACCATTAT GAACAGGCGTGTTGTCCACTTGAGATTCGTTAGAGGAAACGTTCAATGAAACCTATTTGAATACCTTGGA AACTTGTAAGGAACGTTAGCAGAAACCCTATTTTCTAAGGTACTTGGGGGCTCTTTGTGTAAAGTATCCT GATTATACTCCAGAAATTGATGCCAATCTTTTTTTCAACAAATGAGAATTATTTATTGAGGCTCTTGACT CTCATATAAATTGTTCTTAGTTTGATCCTTTCTCACATACATTGACAAGTTTTCTTACCCTTGTCCCTTT TGACCCAGGTGAATTAGATGAGTACCTGGCTATACTGGGGCAATACAAATTACAGGGCCTAAAGGAAAAC CAGTATCAATACTGATGATGCTAAACTGGGTAAATTAGACCATTTATTCTTATTATTATCAATATGATTA TTGTTGATAAGTAGAATAATGTTTGTCATGATAGTATATGCATGAAAGGATCATGAATTATGAGAGATAA TGATTGTGTAAAAGTACTTCAGGTGAAAATTCAGGAAAACATTCGTACATGTAGTTGATAGTTTTCAGCA CTGCAGATAACAAGTATAGGCAGAAATGCTCTTCTGGTTTTTGTAACTTTTTCCAAGTTCAAAATTATAG GTAATATTCAGTCCTAAAACCTTGGCAGTTAGAATATTAGAAACAGGCTCTTGAGTTTAAAGGACTTGCA TGCCTTTAAAACTTGAAATGAAAAAGGCTGATAAAACAAGGTTTAGTTTGATGTTCCTTGAGACTACTGC ACATCTTATGATCTAACTATGACTGACTGAAAAATATTTTTAAGAAGTATTAGATATATACATGGAATTC CAAAATGTAATTCTTCCTGAATTTGTTTTACAAAAAGAAATATTGAAAGTGCAGGGTGTCATGAGATGTC AAGTCAAAGGAAAAATGCCCAACTGCTGAGATTCCAGTGATGTTATATCATTACACAACCAGCTATGGAC TACTGGACAGTCTGGACTAGTAGTTGATTTGGCTTTTCTGGAATATTAATGCTTAAAAGATTGGACTTTA ATTGGAAACAATTTCCATTTTTGAATTACCGTATCAAATCCTTCTATATATTTTTTATATATCGTTAATG ATCGAGGCCTTGTACAAATGATTTATATTTTGCTTCAGGTCCAAATTCAAGCATTCTTTAAAATTAGAGA TAAAAGATGGTGCACATAAGGTGGTAGAAAAAATTGGCTATTTTTACTGACCGGTACTATATGTATGTTA TGAAATTGCAATTCTGTCAGAAAATTTGTCTTTGATGTAGATTTGTGTGTATGATATCCTGTACAAAGAA TGTTAATATAAAAAAATCTTTTGAAAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds