Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01031819.1 TSA: Lytechinus variegatus AMR9006.33413.0.4 transcribed RNA sequence TCAACATTTAAGAGCTTGCTGTCGTCCCTCTAAACCATGGCTGAGCACATTCTTGAGGCTCTCTCTAGCA ACCAATCCACAGAATTATATGATGAAATCAAACATCTCCTTGATATTGTTGACAAGGAAAGTGACAATGA TAGCAAGATTTCTACTGCATTTGATGAAAATCTCTTCTCAGAGGTTTCAGAGCTACAACCCAAGATGGAC ACAATATTTGCAGATATTCAAGCTAGCATTCCTTCCCTTGACTTTGAAGCTTCAAGTGTGAGCTCTGATG AGGAACTTAGTGTCTTCAATCGTTCTATGAAAACACCACATTCGGACCGAGATCCGACTGAAGATACCTT GACACCTGAAGCATGGCGAAAGGCATTGGAACCCACTCAGGACCTGGAAGACATCCCAGTCCAGGCACCC ACCTATGAGTACATCAAAATCAGTCAGGATTCCAGCCCTTACAGAAATCCTGCTTCCTTCAAATCATCCA TGCCAAAGCTTGTTGAGACTGAAACCAGTGGAGAACCAACCAGTCCTAGGGTATTCAACCGGCGCTTGAT GTCCATGTCTTCGACAGGATCTGATGATGGGACTTTCCGCTCTCCTCTCCTTGCACAGGAACTTGTTCCT CGAGATATGATTCCATCCATCGATGACTTTGATGATGGAGAGGACATCCTTGGACACTCTGGCAGCAGTT TTGGTAACTCTGAAGGCAGCCTTGGACAATCCGGAAGTAGCCTTCAGACTGTTATTTCATCAGTTGTTGC TGAAAGCTTTGGACTGGATTTTGAGGATGACCTTGAGAACTTACCTCAGGACATTGATCCAGGTGACAGT AACATGGATGTTGCTCAGGAATCTGTGCCTGTAGAAACCATATTGGCTGAGCTGACCAAAGATCCATCAA GAATTGTAGATAATCGAGAGGTGTTCCAGGAGCAAAGCGAAAGTGATGCCATAATTGAAGCCATGCTTCC TGCAGAAGTTCCCACGTTGGCAATAGAGAAAGTGGATTTTATTGATCTTGACCTCTTGATTGATGCCTTT CCTGAGAGGTCAAATGTCATGGAGAGGTCAGGAGGTCAACCAGGAGGGAAAGGAGATGGAAGTAGCACGG ATAATACATGCCTGATGGACAAGCTAGCCCAGCTTTGTATTGACCAGTCTGGAGGGAAGATTAGCAAGGC AGACCTCACTCCATCCCACTCTCAGCAAGGCAGGAAGAAAAAGGGAAAAGGTCTAGCAGCTAAACCACCC AAACCACCTCCTAAAGTGGTCTGGGAAGAGAAGACTAGTCCTAAAAGCACCTCCCCTCCCAAGCCGAGTG AAAGAACCCAAAACAAGTCAGCTTCTACAGGGACCTCTACTGTCATGGACCATTCCATTTTGGATGTAGG AGAGCCCTCGAATATAGCTGGTAAAGGAAAAGTAATGAATCTTCAGAGGAGCAAGCAAACAGTCTATTTG GACTTGAGGCCTAAAAAAGAGGATGAAGATGAGCTGTCTAGCAATGCCCCATCCAAAGCAGTTCAAAGAA TCTTACAGCTACACTCTAAACAGAATGAAGGTAGTTCTAGTGATGACAGTAGTGATGATGAAGATTCTGC CCTTGGTTGGCATGAGAAGAGGAGGAAGATCATGCAGAAATTAGGTCAGGTCAAAGGTCAGTCATCTTTG ACCTCTGTAGGAAATCAAAGTGGTGACAATGAGAGAGCTGCTACCAGAGATAGAGAACCCATGAGAAACC TTGTTGCTAAGCAACACAGAGTCATACATATTGTACATGATGAAGGAAGGGCAGAAAGCAGCACACAGAC ATTACCAGTAGTAAAGCCAATACCAGTACCAAGGGAAACCTACAACCTTCAACTTCCTCCAACCCCTCCC CAGTCACCCTCTAGCCAGGGTAATCTTACCCCACAACGCAGGACTAGTCTTGGAGAGGACGAAGGGAACC ACAAGGACCAGATGCCAAACAAGAAGGACCAGGATCGGGACCATAACATGGTCTTGGCCAGGAAGCTCCG GGAAGAGAAGGAAAAAGAACGTCAGGAACATATGAAATTTCAGAAGAAACTTGAGACGTTACGTCCACAA ATGACTATGTCAGCAAAGCACAAGGAGATTGCAAAGGCAACTGATGTGATCTTTGATCTGGAAGCATCAT ACAAACCAGAATCTAACCTATTACCCTCGATCCTGAAGCCGACTCATGAAACAGCCCTCCTTACTGTCAC CATGACAACGGTTGGAAATATTCTCCTCCACAAGAGCTCTGGAAAGCAACCCTTAGAGAAGCTGGATAGC CAGATCTCTGGAACATATATAGTCCTTCTCTCTTGGTTCCTTTCCTTGGTTCCTAAGGACATGGACTACC TAAACGACCCTACTGTTCAGGCTACATGTGGTGCAAGTGGGATAGATAGTACTCCTTTCAGAGTCCTTGG TCTGCAACAGATATGGAAAAATGGAAAACTACAATTATTGGTGGCCATCACACCTCCTTGTATGGACTCC ACAAAGCACTCACCCATCAAAGCCAAGAAAGGCAAGCTGAGAAACGAGGTGCGGGACATGACCCCCTTCC AGCAGACTGTCTCCAAGTTCCTTACCAGCAAGAACCTTCATACCCTGGCCCCATGGATGCCCCTTGCCTT CAGGTTTGCTCAGGAGTTCTCAGGTGAACCTTTAGAGTTAAAACCCATTCCTATGGAGGCAACACGAGAG GGCGCTACAGACACTGGAACATATATCCCACCATACCCTCAAGTCAGCAGCAAACCCCTTGCTACTTACG TGTCACTGAGTACTTCTCCTTGCGCAGTAGAAGGTGCTTTCACATCCACTCCAGGCTTCTTCTGGAGAAC ATTGGATGCAGAGGAATTGGTATATGACCAGTTGACTAACGATGAATACAGTAATAATGGTGATATACAG AACACTTTGACTGTTTTTCATGATGCAATATATCACTTTCCGTCCAGACAAGCAGGGGTGTTATATCGTC TCCTTCAGGAAGGACTTGACATCTCTGGTCTCAGGCTTATGTACAACTCTAAAGATCTTCTATCAAGTCC TCGTGTCCTTCGACCAAAGCAGTGTGGTAATGAATCAGGTATGCCAGTAGTCGTTCTTGGTATCAGAGGC AACCTGGCCCGTACCCGATGGCTAGATGCAGTGGGGCCCTCTGATCCTCAACTTGCAAAAAGAACAGATC CATATTCCTTGATGGCCTTATATGGTGGGACCACTCGTGATGACCTTACTATTATCTGTCCTCGGAATCC AAGCCGTATCAATTATGAACTCTCACTTTGGTTTGGTGCAAGAGGTACTAATGATCGCTTAGTTGAAGCT ACAGACTCGGTACCATCACGGCTGGATAGGAGAGTAAGATCAGAGAGTCCTAAACAGAAGAAAAGCCGCA AGGGATCAAGGAAAGATTCTTGGTCAAGCAGTAGCAATGAAGACCTGGAATCTACAGGGTTGTCAGCTAG TACCTTAGTAGCCAGCACCACTGGTGATATGGTTCTATCGGTGTCTCCTCTGGTACCTCCTATGTGTCTT GGTGTGATCTTATCAAGCTGTCAGGAGAGAGGTTATCAATTGAGAGGAATCAAGAGAGTCAGACTCAACT CTAGAAGAGCTAATTCACTAGGTTTACAGGGCAAACAAGTTTCTGTCTTTAGTCCAATGTCGTGTTCTAC TCCAACCTCACCCAAGAATTGTGAAGAAGCATTGAGAAAGCGTCTAGAAGCTGGTTTACCTGCCTCCACT AACCCTCCTCTTCCATCAATCTTGATTCATTTAAGAGCAGAGAATACTATGAGGAATGCTGGTGGATTAA TCTATGCTCTTATGATCCAACTATCTAGACAAGGTCTATTGTCATCCATCCAAGCGAATGCAGAAACCAA CCTCAAATCCAGCTTGTGTTTCCATGTAACGCCTTTCTCTGACAACCTCCTCTCCAATCTTGGTGGTGAT TTCAGTCGTATTCCTGAGCATGATGTGTATCATGGAGTGTCTGTACCATCTTCATTCTACTCTAATCCAG AGTTAGAGCAGATTGTTGTTGTTACATTTTCAGGAGCTAAGACATTAAAACTCCTTGGTAACACACTTGG GAAGCTGCTTGGTGTCTATCCAGTGACATCAACCAACAACCTGATGACACCTAGAGCCAATCCTGGTGAA GGTTTAGAACTCCTTGGTATCAAGTTCTTACCTTCCTTGACTGCTTTCCAAGCTAAAGAATTAACACCGT TTGAGGTCGGTGACCGTAGCTGGCAACCAAGTGTCCATACTCTGGTCTCTAACCCTGCTGTTATCTGTGT CTTGCGTGGGATTAATGCTTTCCACCATGTCCGATCTGTACTCAAGATCCCAACACATCCAAATGACTTC AGGCGTGGGGCCAAACTAGAGGTCTGCATGGAGAGGTTGATGTCAGCATCTGCTGAGATTGCTTTCCGTC AGGCATCAATGTTCTTCCGTGATCATGAACTTTTTGCTGATCCCAGTATGAGAGCTAACCTACCTTACCA GCCTCCATTACGTAGCCCTAGCCTTGAGGAACTCTCTAATGCAAGGTTTGCATGGGCTGAAGATCATGGC TTGAGTTCAAAGAAGACAAAGTATAAGGCCAATGCAGGAGAGACAAAAGGAACAGTGCTGGTTGAAGAAT CAATATTCAAGACAATGCTTGCAGGCCCAAGACCTATCACGACAACACTTGTGATCAAACCAGGAGCACT CAAAAACTTCTCCAAGATCCTCAAACGAGTTTGTCAAGAAGATTTCATCATTGTGGCCCTTCGTCTTCTT ACCCTTAATGATCGGCAGGCCATGGCTTTGGTACCAGAGAGGGAGGCAGAGAACTCAGTCATCTGTAACA TGCATCTGGACCACCTTACATCTGGTCCAGTCCTAGTCCTGGTCCTACAGAGGGAGAATGCTGTTAGGAA GCTATTGAGTCTTCTAGGACCAAACAATCCAAAAGAAGCAAAGAAGAAGAATGAGTTCCTTTGGAGAGGC ATGTTTGGTGCTGACCCAATCAACAATGCACTTCACGGTTCCATGACGTATGTGAAGGCAGTTGAGGAGC AGATTTTATTCTTCCCTGAAGGATTATGTTGTAGACTAACATCAGATCTCAAGGCTGATAAGATTGCCTG TCCAGCTATAGATACTGTTTTAGGAACCAGCCAAGCCTCTAAGAGAAGTTTCATGCTAAGGATAGGATCA CCTAGAGACACCAGTCTATCTTCATCTGAGAGTTTAATATCACACAATGGAGACACAAGCCCAAGGAGCA TAGGTGTTGGTACAAGTACTGCTGACCTTACCTTTCATTCCCATAGTGCATTGTGTCAGACAAATTGCAT CCTGTTGACCCCACCTCTTCAGCTTCTCAATGTCAGTGGTCATCGTAAGGGATATGTTGATGTCATTGAT TGTCTCCGTCATCGTGGGTTCATCATCGTTGGTGCTAGGATGCTATGGTTTACCCAGGCTCAGGCTAAGG AGTATGTCTCAATATACAGTGGGGCTTTCCCCAATCTGGGTCAACTTCTCTGTCATGGACCAAGCATTGT TCTAGCAATACAAAGAGATAATGCTGTTAGCTGTTTAGGTTCTCTTCTCGGAAACATGCTGGATAAAGAA TCTGTTATCAACAAATATGGGAAGCACATCATGAGACCTAAGGATACCAAAGAAGCAATCAAGCATCTTG AGTTCTTTTTTAATGAGTTGATACCAGGGAGTCAAGGAGAGATTGTATCAGACGATGCCTCATTGGGATT TCTCTCATCTTGATATTTGGGCTGAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds