Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990492.1 PREDICTED: Strongylocentrotus purpuratus 5'-AMP-activated protein kinase subunit gamma-2 (LOC756927), transcript variant X7, mRNA CAATGCAAATAGTCCATCTCTTGGCAAACACAAACAAGGCATACAAATAATCACAATCCAGAATCCCTAA TAGGACAGCGTGTAGTATCAGATTCTAACTGAGCCTGACTCGATAAACGCCGCCAATAGGGGTCCATTGA GTATGCTCATTGAACTGAGACGTAACATAGAACTATAGGGTCATGTACATAGTGTGTGAGCAATGCAGAG CAAAGGTTTGTGCAGTGCGGTATCACACGGCTGGAATCCCACTACCGGTGCTATATATTATCATAGGCTA GCTGTACGCCAGCCATCACACAGCACATGTAGAGGCGTTATTGGCTTGGGGATGGTAAATTGAGTATATG CTCTCGGTTGGATTGCTGGCGGCTGGCAGGACTCAGAGCGTAGCATTGTTGTGTTCACTGCGATGGTAAT GGTGGTGTACTTATATGTGGGAAGCTAGCCAGAACCGGGTCAGTTCAGGTCTCTGACAGCTCAAGCTCAG TCTCTTTAGCATAACGCTGGTTCACGTTACTCTCTCTCTCTCCGACCCATCTCACTGTCTTCTTGCTCAG CCAGGCTACACTGGTGATTCTACCCATCGGAGATCAAGGAATACAGCTCTTCATTTGTCCTGTGTCTTGG AATATATACTGCAGCTCATTAATGTCTATGTGTATCATCGTCAACCAGGAAATATACAACAATTTTTGAC GTATAGCTGCTTTTCCTCTATACCGGACTGTAATCCATCAATGAACCGAGGTCACACATAGTTGCTCGCT GTGTAACAAGGACAGGTTTATCTCATAATGATATTTCATCGTAATTATTGAGGTATATATCTTCAGACTA TTGAAACCCTTCAATGGGCAGTTTGATGTGAATATCAGCTGTGAGCTATTCCTGGTATTCTATCTTTATT CAGAAAGTGCTTGCTAACGTGTGTGACTACATCATACCCACAGAACATTGTAGGTTGGCTCATCACACGG TGTAATATAATTGCATTCAATCAATTTATAATGCATGAAAATATCAAGGTACCTGCATGCTGAATACGAG CTCGTCAAGTCTATGCTTTCAACTGCAGGATTCATTCATTTATATAGTGGAAGCCATAACTCATCAGGAT TCACATTTGTTGCCAACTTACGGAGACAGTCGGCAGCAAAGTGATTAATCACCAAGCGGTAGATATGTTG CATTCCTTGATCAGACCATAAGCGGATTTGTTTTTGTCTTTATAATTTTCCTTGGAAATGAAAACTGATG TGTTGAATGTCGTTTGGTGGCTTTGAGCAAATTTACCTCATGTGAAATCTACAAGCTACAGTACATGAGG ATTGTTTTTACTGGAATCCCTGTATCGTATGAATAAACCATTGATTTCTAACATTTTATTATCAAAGTAC TGATGAGGATTAATTGTTACGCTGAAACTAATTCATGAATGAAATAGCTTTCCATTGGTAGCCAGGATCT GCATGATGATAACTTTTGACTACAACCTGTGAATATTTGCAACTCGAGTGCTGTGGAATATAATTTATTG GCTTGCATTCTGCTCGGCTACGCTTTGCGGACTATACTCTACTGGCACTACCAGGCTTGTCAACATTTGG ATTTTAATAGTCCTTGAAGCGGAAAGCAAAGTACATTAGAGGAATATCAATTACAATCAAACCAAACAAC TTGGCGTGATACTGTTTCACCACCTCAAGCTCTCTTTCTTACATTTTTCACTACTTGTGATTGCCATGGC AACTGCTCATTAGAGGAATAACATTTCAGACAACTCATCGTCACTGATATAGATGTTGTTATCACCAAGC TTTTAACGTTTCTATTACTATCGCCATCCGCAATCTGATATAGATGTTGTAACACCAAGCTTTTAACATT ACTATCGCCATCTGCAATCAGCAAGGGAGATAGAGAGTACATTAGAGAATTTAAGTTCCCAGTAGATTGA ATCTGATCCTCGCGGGAGTGATTTGATCATATCTCCGCGGGAGTGATTTGATCATATCTTCAAGATGATT GATATCGATGAGGCGATGGCTCTGGAGACGGAGGTGGAGGAGAGCCAAGGGGATAAGAAAAGATTGGAGC CACTTAGAGTTCGATCCTACTCAGAGTCCTACGTTAAAAAGAAAGCTTCCCCGTAAGGCCAGTGATCCTA TAGGGACAAGGGATTATTACAAGGAAGAGGAGGAAGATATGACCTTCGTAAGGTTTATGAAGAATCACAA ATGTTATGAGATCATCCCGACCAGCTCCAAACTAGTCGTCTTTGATGCAGAGTTATTGGTGAAGAAGGCT TTCTATGCCTTGGTGTACAATGGTGTCAGAGCAGCTCCACTATGGGACAGCTCAAAGCAAGACTTTGTGG GTATGCTGACAATAACAGACTTCATCAACATCCTTCAGTACTATTACAAATCACCATTGGTCAAGATGGA TGAGTTAGAGGAACACAAGATAGCAACATGGAGAGAGGTGTTAAAAGAGAAAGCCAGACCGCTTGTGTGG ATCAATCCAGATCAAAGTTTGTTTGAAGCCGTCAAGATGCTCATCCAACAGAAGATTCATAGGTTACCAG TCATAGACAACGCTACAGGCAACGTCATCTACATCCTAACTCACAAACGTATACTGAAGTTCCTTGCTCT ACTGCAAAAGACTGAAATAAAGAGTCCCTCCTTCCTGAAGAAGACCCTTAAAGAACTCAACATCGGGACG TACACCAACATTGCCACAGCTCGACCGGACACCCCTCTGATAACAGCTCTCAATATGTTCATAAACAAGA GAGTTTCAGCCTTACCCATCGTAGACGAGAACAACAAGATTGTGGACATCTATGCCAAGTTTGATGTCAT CAATCTTGCTGCTGAGAAGACGTATAACAACCTAGACATCACCATTCAACAAGCGCTCCAGTTCCGTCAG ACATACTTTGAGGGTGTGAGTACATGCAAGGCTTCAGAGACATTAGAAACCATCATGGAAAGGATCATCA AAGCTGGGGTCCATAGGTTAGTTGTGACTGACGATGAGAAGCATGTGATAGGCGTCATCTCACTTTCAGA CATCCTTAATAGTTTAGTGCTCAAACCAGCAGGTGTACCCAGTAGAAAGAGCAGCTCATCATCGTCAACA CAAGGGTCGCCGCGGGTATAGCAGGGTCACCAGCAGAGGGCAGTATTTCCTACAAGTACTAGCAGTTGGG TATCAGTTCTTATGTTCCTCAGAGATCGTACAAGGAGGGCTACGTGGTTTAGAAGAACCATCATGAGCAC AATAACATACGGTCGCTTGATGTATCGGGTTCCAGGCCATGGATTGCCTGCTAGTGCATCCTGCTGTATT GGAGATCATGCAAAGTCATCTCATCGCCAAAGATATTCCCTGACTTATTTTCTCTGTCATTTTTTCATTG TCACCAATGTCTTCATGATGTTATAAAGATATTATATTTTTATTTTATTTGAGAATTATAGTAGAATCAC CACAGGCACACAGGGATCATAAATAGAAATAATTTTCTTTGTGGTATACAGTCAATAGTTCTACAGAGCT TACACGTTTGCAAAGAGTTACATGTACATGTATTATAATTGCACTTTTCAAAGTAAACCTTTTGGCAACA TTTATATCTTTTTGAGACACAAGTCGAATTATAAGTGTTTGGGAAATCCAAGCTTTGAGATTCGTAGCAG AGTTAAACACAAAGAAATTGCTTTATCTGTGATATTCCACCTTGTGTTAGCTTTGGTCAGGCATGTCATT TGAGCAGCTCGCTAGAACAGCTGAAGACAGGAAGATATGGAGAACCTGTGTCTCAAAGTCCATTTCATTG TAGCCTTAACGGCCTCCAACCAAGCTATGGGACATAGATACCTGTAGCTAGATTTGGTTAGTTAGTTTGG GTTGCTGGGCTAAAATGTTTAAAGAATTCACAAATCACTCATTAACCAATTGAATACTAGATTATCTAAT TCCCATAGGCTTAACACATGGACCAACAGGTTCCAGTAAGCAAAGGGTTAAAATCTTCCAGGAAGAATCT CAAGTTTTCGATGATTCAGATGATTTCGAAGATCGGGTGGAACGGAATGACTGGAGTTGCAAGGACAGAC ATTTCAAATGTTGTGTCTCTACTCTAGGTGTTTTCTTATATGATGCTGTAAACATATGGATTGTAGGAAT CAAAATGGGAAAAGTTGGTGGCCAGTATACCACTTGTATCTACTACAACTCGCTTTACTTACCTATCTGT TTCATAGTTGCCAATCTCCAATTAGAATTGCCCCAATACCTGAGATTAAGAAAGTTTTTTGAACTTTCAA AGAACTTTTTCAGCTACGGGGCGCAATTCTAATTGGCTTTAGAATGGCAATTATGAAGTAGATAGGTAAG TAAAGCCGACTCATAGATAAAATGTTAGGTCACAAACATACAGATATGCTTTAGAAAAGAGTTCTGTGAC ACATCCAACATTATTCACCTGTGTGACAGTTTGGGTGTCTAAGTTGAGACATATACTGGCGGACTGAAGC TAGCTGCCAGTTTTAAAAACTTTAGTCTGCTTCAGTCTGTCAGCACAAATCTAAGGAAGTTATGTGGACT GACGATACAAAAACTGTCACACAGGTCGATAAATTGTAATGTGTCTTGGAATTCTTATCTAAATTATTTA AACCATCTTTTCTAAATTATTCAAACCATCCTGATCAAATTGTTTGTCACTTATATAAGGTTCTGTAACA CTGCTATTCTTTCTCCTGTCTTGACAATGTAAGTGTCCTTTCTGCATGTGTTACACGGAATCGAGAGTTA ATACTTTGATAATTTTTTATCAAGCTTTTGATTATTTATTTTGATTACATTGTGATTTTCTACTGAAATA TTGGAACATGAATTTATGTTTGCTTTTGCATGATATTCTTTTCCGTGAGAAAAAAATGGAACATATCCCC TTTTCCTTGGAAATTTGAAGATCAAGCTCACATATTATTCAAAGTGATGCTCACATAGTAGGATATGCAG AGTAAAGAGAAACACATGGCAAGGAATGGTTGTATACTTTAATAACTTCATGCATAGGGACTTGCTGGTA GAATTTATGAAACTGTACATGTAACTATATCATTATAGAAGGAATATCTAAGTACTGAGAATGTTCCTTT GAACTTTGTAGCATTGAAAATCTTTACAAAGGAAAGTCCTTTATTTTAAGCTATCATCCCTATATGATAT TGTTAGAAGTATATTTTTGAACCCCAATCGAGTTCAAGATTGTACAACAACTTGGAAAGGGCTTCATGGT GTCAATATATTCAGGACTTCCAGATTTGTTCAAGTTATTAAAACAAATATTTCCCCAACCACCATCATTA AAAATTGTATACCCAGTTACCTGTACTTTATGAACAAATGTTTGTTCAATTTGTTTTTTCTTGACTTACT TTTTATTTCTTGTGGTTTTAACAAACTTGGGAACCTATGTGAAGACAAGTATGTTTTCTTTGCAATAATT TTTATTTTAACTCATATTTTGTGAATGGACTATGATTGCATGTATACTTCATTTTTTTTTCTTTTGGTGA TTTTTTGTTTGTTGCCAAAAACCTGTATAAATGTAAATAGAAAGCAAAATGAAATAATTTGTAGCAAATT GTTTTTGAAATATTTAATATTGATATCACTAATGATCACTTTGATTTGTTGCTTGTTATCTCGTGGATAT GATTCAAGTGTGTTGTCATTGTTAACAAATGAACATCACAACAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds