Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041628031.1 PREDICTED: Lytechinus variegatus RB1-inducible coiled-coil protein 1-like (LOC121430686), transcript variant X2, mRNA GAAGATCAAGATTCGAATTGCTAACTTCACGTTTTTGATCGTCATTGTTGAAGACCCGGAAAGAAATTCG GTATATTTTCTCTCCTTGCATCAGTGTATTCTGAATCGTCATCACATCTTTGATCTTTGATTACGCAGTT CAGGAGAGAGTAAATTTTCACTGAAAATTTGATTTAAAAAGTTGATTTCCAGTGCAGGATGGCTGGCGTA TGGAAACTCACACGGTTTACGTAGAAAAGACGAGTCCTCAGTCCCGTGTCAGTAAGGAGACTAAAGAATC GTGGCAGATCCCATCGTCATTTTTTTGTTTTACTGCTACTTGTGTGAGACTGCTTGGCTGCAACTATGCT GTATGTTTTTCTTGTGAACACGGGAGAGATGCTGACTCTTGATATGGCTCTCACGATGGAGAGCGTTCAG CAGCTTCATGATACTCTATCAGATGACTATCAGATCCCTTATGAGAAGCAAGTCTTATTGATCAGCGGAG GGCAGAGTTTAGATCCGCAGATGAGAGTATGCAGTTACAGTGCTGGCACAGACACTAACCCCATCTTCCT GTTCAGTAAAGGGACCATAGAATCGGCAAATCCGCCAGTGACTACCAGCATGTCACAGACAAAGGAAGAC AACCTCAAGCTTCAGGTCGAAGGACTCAAGAACCTGCCTCCTAGCTACAGTGCTGTAGTGGCACGCACCC AACTAGCCCTGCAATTCCATGAAGTAGCCAAGGAGAAATTGAGGGTCTGCGAGGGATTGATACACAATCA ACATTTACAACAACAAGGTTGGATGGCTGTTATAGCTAACTTGGATGACATTACTAGTGCCTTTCAACAA AGAGCACTCGTCTTCCAGCAGAACATAGCAGACTTCCTCACTGACAGACCCAACTTTCTTCAGCGCCTTG AAGAGTTTGGAGACATCATTCACATCCTTGAGAAGACGCCTCTTCTACCTTGCCTCAGGGATGGTGATCG GTCTCCATGCGACCATGAGGAGAGGGATGTATCCCTTATGATGTGGATCAGTAGACAGGACCAGAGGAGT ACTCTACAACAAATGGCTGTGCAGTGTAGTAAAGTACTTGACCAGTTCAATCAACCAGTCCTTGATGCCT TGGGCAGTGATATTAAATCATGCTTAGAGGCTGTGAGTAACCCAGGAATGAAAGAAATCAAAGGTCTTGG AGAAAGACTATTTGGTCTAGAGCAGCTGTTATTACAAGCTCGTAAACTCCTCAATGAACAGGCTGAAATG GCTCAGGGGCTTGTTCAGAACCAGACCCGCGCTAGTAATGTGAAAGACCCCTCAGTGCTACCGGACCTAT GCCTGAGTCATCAGCAGCAGCTAACGGTCATGTACAAGAAGCATCTACAACTCATAGACATGAGCAGGAG ATGTGAGATAGCAAAGGAGGAGCTCTGTCAAAACCTACATGTCAGATTAAGATGGGTAATGTATGTAGAG CAGCAGGTCAGCAGTGTCCATGGTAAGATGTTGGTATACCATGAGAACCTGAAGAGACTACGCAAACGTT TGGAGATAATCCGTCAGGTCTGCATGACGCCAAAGCTCTACGCTTCTGCTGTAGTAGAGGTGTGCAGGAG ACGCCGTTACAACACACAGTATCAAGAGTGGTCTGGGAGGATAAGTGAGACATCAGTGTGTGAACATGCA GAAGAATTGAAGAGGAGAAAAGAGTTTGCTTCACTCATGCATAACCACTTCCTCAATGCACTCTTCCCTG GGTTCTATGAACTGCCTCCAACGTTTGCAACAACACCCCCTGGTAACTATGACAACTCCTTACCTAATAT CATGGACAAAGATATTCTTCTACTCAGGGAAAAGGTGCCTGAATTAGCTGAAAGTCTAGAGCTTCCATCC AATCAACACTTCTCATGTGTTACCTCACTACATACTAAGCAGCTGCCATCTCGTCCACTCTCGATAGAGA TTGAAACTCAGACCGAACTCCTTTCGGAGGAACTTTCATGCCATCCTCCGCCCTCACCGCCTCCACAGCC TCTTACTGAAAACAATGCTGAAGCGATCTCTGATCAAACATCAAAAGATGATGACTCTGATGGTGCAATT ACACTCGAGGATGGCAAGGATCCAAGGGATAGACCGGGTTTAGAAAGTCAACTCAGCCAGCCAAGACTGT TATCTCTTGACATGCCTCAGACGAATGATATTATTCTGTCTCCAGACACGCCAGAGCTTGACGCAAAGTT TGAGTCCGTTTACAGGGATGCTCCCTTCTCGTCTCTGCTTCCTGAAGTCGACAGTGAGTTTCATTCGGCG ATCGGTAGCCCCATGGATGAAGGTTTGGTGAAGAAGGCCAAGATGGATCAGATCCTGCCGGTTCTTAGAC CCATGGAGGAGAATCAGACCCTGAAACAACAGCTCCAAGAGAGAGAAAAGATACTTGAAGAGCTTGAAGA GAGGAAGATGGTCCTTGAGAAAAAGCTCAGCGATTCAGAATCCATGATTGGTGACCTGCAGGAAAGCGTA AGCACTCGGTCGCAACGTCTTGAGGAATCTCAGAACACCGTTGACTGCCTGAATGAGGTTGTTCAAGCAC ATGTTACAGAGCTTAGAACAAAGTGTGAGAGTATCAAGAAGTCTGTTGTAGACACCAGGCAACAGATGAA AAAAGAGGTTCTAGAAGCAGTGGCTAAAATCACAGAATATTCACACCAGGTCAGCAAAGATTCTGAGAGA AGACATGTAATCGTCATTCAAAAAGCCGTTGATCAAACGCAAGCAGGACTTGAAAAAGAGAAGGAGGTGC TCAGCAAACAGATCTCTGATCTTAATGGACAGTTAGAGGTGGCTAATCAAAAATTGATGGACCTTGAATG CAAAGTCAGGGAGAAGGAGAGCAGTTCTGAGATGCTCAAGTCTAAATACCAACAAGACCTTGAGGAGGTA AAGACAAAGATGGAAGAGGATGAGAAGCAGATGATTGCATCCATGAAGATGGAATTAGAGATGGAGATCA CAGACTTGGAAGCAAACATAGAGGAGAAAGAGAAAGAAATAAGGCAGCTCCAAATAGAATCTGTTCAGAG GCAGCAGGAAACGACTGCAAAGCTCCAAGAAGAGAAGCTGCAGGAACTTGATAACCTGAGGAAGGAGATG GGGGCATTGCACAAGAGTGAGTTGAATAAACTTGAAATGGCATTGCACAGCAGACATGTTGACGAGTTTG CTGACTTTAAGAGATCCAGTACATTGCAGACGGAGAGTGAGTTAGAAAAACAGAGGAAGCATTTGATGGA GGAGCGCAGTGAAGTCATTAAAACGATGGAGAAAGAAGCCGAGGAGAGATTGAGGACAGCTAGGGAAGAG ATGCAGGCATCTTGTCAGAAGACACTGGAAGAAGAACAGAAGCAAGGTCTAGATGCAATGGAAAAGCAGA AGAAAGAGATGGAGGAGAGAACCAAAGAAATTAATGATCAAAAGAAGAAGCATGAGGAAGAGATGAGGAA AATAGAAGACGAATGGAAGGAAAAGTTCCTGAAGGAGTTCCGTGAGTTAGAGGAATTGAATGAGAGGAGG ATGGAAGAAGCAAGAAGGCAACATGAAGTGGAGATGGAAAGAAGACGGACGGAAGAAACAGAAGGTATTG AGAGGATAAAAAAGGAGATGCAGAGCCAATTTGAGACAAGACTTGCTGAGGTGACATCCTCAAGGGACAA ACATGAAGCTCAAGTGCAGAACCTTCAAGAAGTTCTATCACGACTCAAGGCGGAAACTTGTCAGAAGGAG GAGGAGCTTAATGCTAAGTGGGCGGAGTCTATCGCCGTGGAGAAAAGCAGTTGTGTGGAGGCTGCTGTGG AAGAGGAGAGGAAAGAGGGAGAGAAACGGTTAAGAGCTTTGAGGGAGAGACTGGAGGAGGAGAAACAAGA AGGTATCAGGATTGCAGTAGAGATGGCCAAGTTTGAACAAAGCCAGAATGATGCAGAACAGACTGCATCC AGTTCTTCTACCGAGAGCACATCTTCCATGGCTTCCACCAGTCTATCGGCTAGCCAACAACAGGTGTCTT TCAACAAGGCTATTGCAAAGGTGGCTGCCACAAAGGATAAACGTATTGCAGAACTAGAGGCTAGAGAGAG GGAATTGGTGGAGGAGCAGCACAGATCTAAAGACACTATTGAGAAGCTATTGATGGACAAGACTGACCTT GATACGGAACTAAGAGCTGCCGTACTCAAGGCTCAAGAAAGGGAATGGCAGGCCATCAGGGAGAAAGAGA GACTTGAAGAAAGGATGAGGAAGAGCGGGGATCTTGCTGCAGGGAACGAAGATGACAGGGGTAGTCCAGC TGAGATGGTAGTTTCTACACAAAGTGATGGTCTGATGGAGGTTACTGAAACCAGAGACCAACTCAAAGCT TTACTTCATACCAAGGAACAAGAATGCAGCACCCTCAAAAGACAACTGATCCACATGAGAACATCATCAC CGGGTGGTAGGATGGAGAAAGTTGCTATCTCAGATATCAGTCTTGGAGATTTGGTGTTCATCTTTTTTCA AGAAGGACAGGAGAACTTCATGGTGTACAGTCTAGAACCAACCCTGTATTTCCTACACACTGAATCACTG AGTGCTCTAGGTCTCAGATCAAAGGGACAAGCTGTAGCAAAGTTCAGTTGGATCATTGCTCGTATTACTG ATAAGGAATACTGCCAAGCTAAGAAGGCCCAGAATAGATTCAAGGTTGCAGTAGGTACCAAGTTCTACCG CGTCAAGGCAATACGCTACGACCCGAAAGTGGAGCATGTCCCTCGGAAGTGATCAATATACGTTGTTAGT CTATTCACTCCAAGAATCTTAATACCCTCTCACAGGCAAAATTTTCCTTAACCCCATAATATAGGTGGGG TCAATTGGCAAGTTAGCCCTACCTATATAGTACAGGGTTAAGCTTAGCCCTCTTTCTATTCCTGTAACCT TTATGCAAAGTGGGCCTACCCCACTTAAAGTATGGGATTGTTTGGTCCTGGAAAATATCAGGGTTAGCCA AGCAAATTTAGCCGGGCAGTTGTGGCATTAAGTTTTGGGTTAAGAGTCATCATGAGAAAAGAAACCCGGC CAAGGCAAGGACAGTGTTTGATGTATGCCATCAGGGCAACTGAGCCAGCACTATCGTCAGAGATAAGAGC TCATTAATAGCTACTGCTAATAATAGCTGGTTTATGTAACGCTTTTTGCCTTTGAGGATACAAAGAACTG CTATTATTACCCCGGCTTTAGCTCGAGCTACCATCATCAGCGCTCAGTGCATTCAAGGAATTAATCCTTA CGGTTACCCATTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds