Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT098368.1 TSA: Strongylocentrotus purpuratus WHL22.331559.0 mRNA sequence TGGATGGGGACTGAGATACGCAGGGGACTTTAGAGATGGTGCACTGATCACTAGCAGTGGGGACATCAAG ACATCTCTTGTGGCCATCGACGCATCCTGCAATCCCGGAGACACCCAGTACAGGGACCCGACCCTCCTGA GGGAACTCAACAAGGCCTATGTGGGCTTCCTGCAGACGGAGCTGTCCTTGAGCAGTCAGATGGGAGGGGA GGGGCTCAGCGAGAGCATCTATCTCGATGCCATGGACCAATCGCAGATGTCGACTGAAGGGGACTTTGAG ACGGCCTCCGAAGGCCTTGACAGCCTGAGCCATCCGAGATCCGTAACACCCTCCATCTCAACCATATCAG ACTACAGCAACTCTCTGAGCAGAGCAATCACTGACATCGCAGTCAAGGACTACTGCCAGGGCAAGCGTGA TCAGGCAACCCAAAGTGAGCCCTCTCTTGACCTAGAAATCACGGAAAAGGGTGATGCGGGATGCCGCCAT GAGGGCTTGAACAGCTTTGCTTCTTCGATTGCCGGTGATGCAGTGAGGGAGGGATACGTGCATGCCTCCA AGAGATCTGCATCAAAGAGAGCGGAGCCTGCTAAATGTCGACGTGGACAATCTGTTGAAGATACTGCTGA AGATATCATAACAGATGCCATCGACTCTCGCCAAGGTGATGGGCAGTCTCATGAGCATGTTATATGGAAG AACGGCCATGGCTATCCTGATGGGAATAGAGACGGTATCGCTCAGGATCTTAGTGCAATCATTGACGACA TCGTTGGTGTCGTCATCAAGGAAGCCCTTGCGGAGATCGCTGGGATGTGCGTGTCTGAAACGAGCAGCCA CCGAGGCCCAAGCTTGGAAGGCTACAGTGTGATATCCACATGGTCATCGTCCAAGTCGGACAGCTTTGTC CGGATTGACATGGACAGTGACTTTAGCGCTAGTGGCACTCGAAGCGTAGGCAGTCTGTCGAGTGTTGGCT CTGAGAAGGTTGGCATGACTGTTGAGGCATACGTGTCTAATGTTGTAGCAGGGGCTGTGCAAAAGATGAA GAAGGGGGAGGTCGATACGGAAGGACAAAGAACTCGAAATGGGGGACAGAGTGTATCAGGATCTGATATT AAGACTGTTGCAGAAAGTATAGTTGGCGGGGTAATGGAGGATGTCAAGAAAAGGTTTCAAAAGGATGAGG AGGATGGGATGAGAAACTCCTACTTCAGACCGGTAGTGTCAGCAGGACTTGATGCTTTTGCTACAAGTGT CACTGACTCTGCTGTTAAGGATGCTATCAAAGAGTTTTCTGCATCAGATCAAGGGTTTCTGTACTCGCAA TACTCGACCATTCCATCCACCCCTCCTCCGTCCCCTTCCAATGCATCCACAGGGAGCTCTAAGCGATTCA GTCTAGAGGATCCTTCGCAGTTGGAGGAGTTTGCTGAAAAGCTCCTCAACTCTATTACCCCTTCTTCAAG ACATCACAGCACCAGAGGATGTGACGGGGAGGTTGGTTATTCAAGGTTCCAGGAGATTGAAAGCTTTGCC AGCAGCCTGGTATCCAGGGCAGTCACTGATTCTACCCAGATAGTCAGCTCATGTGGTTTGTTTAGAAGAG AGAGTAGTTCAGGCTGCATCAGTTCCAGAAGTTCCTTGACGGTCCCTTCAGGCAGTTCCAAGCGATCCAG TATGGACAGCTTCACAGAGGATCTCCTGCGTATCGGAAACATTGACCCCACTGGGAGGAGGCCAAGCAAG ACAGAAGAGAACATAGCCTACTTTTCTCAAGAACTGACTCGTGTTGCAGAAGTGGAAGAGAAATTGGGTC AGAGAAGAAAGTCAGACCTGGAAGATTTCCAGCAAGAACTGTGCCAAAGTTCTATATTAGGTAACGTTTC TCATAAGAATGAACCTACCCAGTCCAAAATTCATGCTGCCAGCCGACTTGCCAACCGACTATCTGATGAC ATCATCTGCGATGCCTTCTTGCAGCTATACGGTGCGACTCCTTTCCGAGAACTCATACGCCTGGACTCTC TGTCAGACCTTGATTCTGGTGGAGGGAATAGGCGAAGGAGCTACCCCCGCCGTGGCTTCAGAACATCATC AGTATCCTCCTGTTCCCTTTCGGTCAGGAGTACCATCTCTGAAATGGATCTGGTCACCCTAGCCTCCAAC CTGGCCAACTCGATCATTGAATCAGCGCTACAGACATACAAGGACGAATACCTGACAGCACAGCGACTAG CAGCTGAGAGCATCACTGAGGACAGTCAGCTTCAGGACACGATGGACGAAGCCTCCATCTTGGCTACCTA TGATGGCTCCAACCTTGATCGCCAGGAGACAGCGTGTACAAGTCTCGCAGGAGAACTGCCGCCTGTACTC TCCATCCACGAGACGGCCGGGTGCATCGTAGAGAAGGCTGTCCAAGATGCAGTAGTCATGTACCAGGCTT CCTTATCGAGCACCGCAAGGGTCGCTAGGCACCCCGTGGGGACTCCTGCCAGGAGGCCTATAGCTACGGG AAACTGGGGATGCGGTGTGTTTGGTGGTGACCCGCAGCTCAAGTCTCTCCTCCAGTGGGTGGCTGCGTCA CAGTGCAGGGCGCCATCATTGTTCTACTACAGCTTCAACGATGAAAGAGTTCGGCAGCTTGAACAGGTAA CACTGAAGATCCAAACCAAGCGTTGGAGCGTCGGCGACCTTATGCGCATCGTCCATGAATACTGCCATCT GGTGACAACGTCTTCGGAGCAGTCGGGACACGGCCTCTTTGACTACATCTTGGGTTTGCAATGTTGATTG ATTGATATGCGTGTGATGTCGTGAATATACGTCCTTTTTCTTCCTCTCTCTCTCGTGTGATATATAAAAC GCAATGATTTTCTTGATTATACACCAACTAAGCAATCACTACTTAATTTTTTTTTTCATGGAATGAATTC GCAACATTTTATTACTATGAAAATATTGTAATGTGGAGTGATTGTGTAATGTGTATGAATAATCAAGACG CAACACTTGGTTGTAATTCTGCAGAATGATGTGTGTTTTATACTACTTGCCGTAACGGGATTACGTATAG TTACGTAATCTTTTGTTCGCAAACTTCTATATGGTATTTACATGTATGTGAATGTAAATTGCAAAGGGAG TAAAGTTATTTGAAAAATGTCAATACCAGTTTGTTGTTAGCACATGGTACAAATGACCATCAATATAACA GATCTTTTACACATGAACAAGTCTTACTTTGTTAATTTTGAAATTGTCACTCCAAGCTTGATGGAGGTGA TACATAAATCAATGATTTGTTTCCCATTTTTTTTTTTTTTTTAAAGGAAACTTCCATTTTTGTACCATGG ACTGTAATGTAGGTGCATAAATAAATAATTAATTAATTCCTTAAGCCTGTTTCCTGTATCTTTCCTGGGT GGCTTTTGCTAGTAGTCACAAATGTCCTTTATCTGCTCATGCGCAAATATAACAGAGTCCCTACGGTCAT GGAAAAAACCCGGAAAATCGTGGGTAAATTCTTCTGGAAAGTCGTGGAAAATGAAGGAAAAAAAGTCTCC CAAACACAGATACAACACAGATGAATACATTTTCTATTGAAATGTAATTCATGGAGAAAAGGTCTGCAAT AGCATAATGCAAAACATTACCACGGCAAAGCATTTCATCATCACGGACTCTCTTTACCCAGGAATGGAAA GGATCATGGAGTTATCACCTGAAGTGTATTCCACACATCGTGTGTCCAGACAGGTTGGTTATCTGAACAG TTGATTTAGAGCAGTAATTTGAAGAAATTTGTTGCGGCAGTTGACTGCGTCATATCTGAATGAACCTTTA ATGTACATGCACCACACTTTACAAAGTAAAATATACATATGTGTGTGGTCTAACTGCAGCTAAACAAATT TAAAACATTTCCTTCTACTGTAATTAACGGTGTATAAACCGCCGTCGTGTATTAACCGCACCCCTCTCTT TCGCCCTGTCGGCAGCAAGCCAGGTCCCTGTTAAAAAACCCACGCGGGAAGGTCTTTCATTTAACTGCAA GGTGCAGCTGAATGTGTAAGATCATTAATGTAAATTAAAAAACAGTAGCGGACCTAGGATAGAACCTTGT GGTACACCATGTAATAGAAGAAAAATTGGAGGAATTATTATTATAAACTACATATTGAGATCTATCAGAA AGATTACTTTCAAACCAAGATGACAGACAAATTTGAGTGTTGTTCTAGTTTCCAAGTGGTGAATCAACAC ACCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCACTGTGTATAAGCCGCACCCCCGACTTTGA ATTTTTTTCGACAGCAAAAAGGTGCGGTTAATACACCGTTAATTACGGCATACAATAGAATTAATGTTAC CGGATGTATTCCTTGCCATACTGAAGTGCTATATCACCAACTGCTACAAAATGTCGCTAGATAAAATATG AAGCTTTGGGTAAATGCTGTGTGTTAAAGTGTATTTACATTGATGTGATGACTGGTGAGATGGTATAGCG CCATCTTGTGATGAAGTTTTTTCACGGGTTTGGCTGAGTGGTCTTTGGGAAACCATTGATGTCTATTGAG AATTGAATAGTCCACTGATGTATGTGTGTTTGTGTGACCAGGTGAAGCATCCCCGGTCCATCTGAGAAGG TCATGTATAGTATTTACTTAAATGGTGTAGCGCCATCATGTGGTAGAGTTTTGCCATGGCATAGGGCTGT GTAGTCTATGATAATCGACTGAAGCCATTGATCTCTATATGAATGGATAGGGCACAGGCTCATGCAGGTG AAGCAATCGCAATCCAGTGAGTAGGCCATGTATGGTATTCCATTGAAATACATGGTATAGCGCCATCTTG TGGTAAAGTTTGGTGATGGGATTTGTTGATTGGTGTCTGGTAATGACAATAAAATGTTTTCTTATATAGG ATTAGTGCTCTTACACAATTGGTTTCACAGCGCTTTACAAGGTATGGAGGTGGGAAAGTCAGATAAATAA AGTGCTTTTTAAAGGTGTCTGGTGTGGGTGCTGTACGGATAATTACTTGAAACCATTGATCACTATTAAG AATGGAGTAGTCCCCTGATCTATATTTTGTTTTTATGAACTGGTAAAGCAATTTACAATCCATTTGAATG AGGATAAGGATTAGAATAATATAGATCTACATGTACATGTAGATTCTGATCATGTAGTGGAATACAGACA AAAAATCCTCGCCCAAATTTCTCTGAAAGAAATTTAAATGGTAATATTAAAAAAAAAATGATAGTGTTAT CATTATTAGTGGGTCTTTGTTCAGCATTCATGTCTGTCAGACTTGACACTCCTAGCGCTCCACAATTATT ACCCTGATATAAGCATGGCTGCCATTATGGTGCCCTAGCCATGCCAGGTACCCATTTACTTCACCTGGGT TGAGAGTGTCAAATGTAGATTAATACCTTGCCAAAGGACATCGGTGTCGCTGCAGGACTCGAACCGCAAA GCACTCGATCAAAAGTCCGGTGAAGAATCCGTGAGCCCACGATACCTCCACAAGGGCATCATCTTCATGC ACCAATAAACTTGTTTGTTGTAAAGATATCATTTGTTGAAACCTACAGTATACCGTACAAAATGACATGG TTTAATATGATGGTGGCGTCTGATATATAGCGCGCATGTCCATCATACTGTGCCGGAGAATGGCAAATGT GGATCAATGTTTCACAAAACGGCGTTAAAGTGCAGGGCTTGGATTTGAACCCTCAAACCTCGGATTGGGA GTCAAATGATTGAACCACTATACCATGACACCTCCACATGCAGTGCGTATCTTTTTTATCGAAATGCATA TAATTTTAGTTGATTAATTACTCATTTCTATTCCCTTTGAACCTTTGTAAAGATTATGCTATCTACAGCA GTATTCAAGGCAATGTCTACTCTAGCAAGGTCTTCTGTATTATTATGATTATTATAATTCTCTATGCAAA AATAAGAATTATATTATAATACTTTATTAGAAGAGGAATGTAAATATGTATTTCCATAAATAAAAATTTA AAAATCAGATCATGATGTAATTTTAATCTCATTTCGATCACATAAGTCAAATCTCAACTACCAAACAGGA CAAATGATTCTGATATATTCTGAAATACATAAATTTTAATATCTTTTCTATCTCAATTCTATAATTCTAC GCACAGTTGTCATACGGGTCGTGAAACTTCAGCATTGTTAGTTATTAAGGTTGGATACTCTTAAGAGGTG CTGGCTCAAATTTACCAATTTTGCTATATTGGATGTGCTCTGGTTTAAGATCCATGTTTATTTATGATGG CTAAATAAATAAACTATTATATATATTTTCATTTTCATAAATGGTAAATAATATATATATGACTTCAATG TTATTTACTTGTAGGTGTTATACATACCAGTATACATGTACCTGCTAATATGTGAGTTTCATTCTGAGAG ATTTACCAGAAATATTTTCAAGTTTTATAATCTCTCAAAAATTATTTCTATCTGCATGTATAGAACATGT ATTTCCAATTTCACGTTGTTTAAAACGATTTTCATTTATAGGTGTAAAACAAATACTTTGTATAAGACAT TCAGTTGCCTCCAGTTGCACCCTAATCTAGCATATTATCCGTAGGCTATGTTTTGACATACATAAAATTA AAAGACATGGTATTATATGAAAGATCGGACAGGAAATCTCTGATAGTCTGGTTTCAAACATAAATTAGTC ATCATAATGATAATCATTTCTGTGTTTGATGACAGAGTTAAGTTTTTCGGTGTGTGAGTGTTTAAGATGT ATTTTCTGTACCTCAAATATTCATGTATTGTTTCATGTGCAATGTTTATCCATGCATTGAGAATGCAGTA AAATGTTGAAAGTGATGTCTGATATACTGTATGAGGATGTATACAGTTAGCAACTAAATAACGGTATTCA TTCCCTTTACCTAGTTTTGTAATTTTTGAAGTATGTGAAAAATAAAAGTGTCCCGATTTATATATCTGGA CAATGTGACTTCTTACATCTCAAAGTATTCAACCAAGGCCCTAATTCAACCAAGTCTACCTTTCATTCGT GAGCTTTGAAAAAAGGGGAAAAAACATCAGATTTTGCGGGGGTATGAATAATTTAGTCATTAACTATAGT TGTTGAAAGTGATGTCTGTTATACGTCTGTTATACTGTATGAGAATATATACAATTAAGCAACTAAATTA TTCATATGAGTTACGGTGTCTATGCCAATTATGGTTGTCTCTCTTTTTAGATATTGTTGATGAAGATGTA CATGTATGTACAGTTTTTGGAATGATGGGTGATGGCTCTCTTGTTCGACACTCATAAAACAAAGTGGCAA GGCGTAGCCAGGGAGGATGTCAATTCGTGGGCAGGAGATAGGGGAAGGTCTCCTCTAATATTTCAGTTAC ATGTAACTGTGTATCTTTTTTATAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
