Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030994893.1 PREDICTED: Strongylocentrotus purpuratus phosphatidylinositol-binding clathrin assembly protein LAP (LOC592380), transcript variant X3, mRNA TGGTATATGAGGATATTCGGGTTACGATTGGTGAATAAAGGATTTCTAATATCTGGTGACTTGCAATAAT ATTTATAACGAGACTCAGCAAAGAGATTTTTCACGGATTTCATTGATAGTGCTTACAATAATTATCATCT TCAATACCACTGGACCACAAAGAAATTCCCATGCAGCTCTATAATAATGTTTTGGGGAAAGCGTTCGAGT GAGTTCTGCGACGTCATAATGTCTTCAAGACGGGTAATACCAGTTTGTTAATATATACCAGACATAATTT TATAAATAGAATTTCATCATTGAAAAGTTGTCACATTTCAGAACGTGCTATGCATGCAGGTCCACTTTGG AAGGCGAATACAGCATAGAGTCAATCCGCAAGAAGTGAGTTAATATCTCACCTAGATGACAGTGTGCAGG GTCCGTATAGATGCAGCTGGCGTCCAAACTTGAAACCAAGACTCGTCTAAAATAATACACGGAGATACTG TGACGTAAACGTGCTCAAATGAGAGCCGGGTGATAAGGGAATAAATCAAGAGCACGAGAAGATTTGAAGA TGGATAAATCGAAGCAGGCTATGCAGTACACAGTGGAGGCTATGCAGTATCTCGTTGGAGGCAGAGCACG TCATCCAATCAGCATGTCTGGACGACAAAGCGTTGTGGATCGCATGCAGGCGGCCCGTCATACGATATCG GGATCAGACCTGGCGAAGTCGGTATGCAAAGCCACGACCGAGGAGATGATGGGACCGAAGAAAAAACACT TGGATTATCTACTGCAGTGCACTGCTGCAGAACATATCAGCATTCCAGACCTAGCAGACCAGATTGTACA TAGATCAACCAATGGCAACTGGGTCGTCGTTTTCAAAACGTTAATAACAACACACCAACTCATGGTCTAT GGCAATGATCGCTTCATGTGGAATCTAGCAACGAGAGCCAGTGTTTTCAGTTTGGATGATTTCACAGACA AAACAAATGTGCAAGGATATGACATGTCAACATACATCAGGCGGTACGCCAAGTACCTCAACTGCAAGGC TCTAGCATTCAGACAAATGGCATTTGATTTCTGTCGGGCTAAAAGAGGGAAGGAAGAAGGAGTACTAAGA ACAATGTGTGCAGAAAAACTCCTGAAAACCCTTCCCCCTTTGCAAGACCTAATGGATGCCCTACTAGACT TTGAGGTCACGTCCAATAATCTGTCCAATGGTGTAATAAATAGTGCATTCATGCTCCTGTTCAAAGACAG CATACGGCTGTTTGCATGCTACAACGATGGAATCATCAATCTCTTAGAGAAGTACTTTGACATGGGCAAG AAAGACTGCCGTACGGCACTGGACATCTACAAGAAATTCCTGATTCGCATGGAGAGGATAGGAGAGTTCC TCAAAGTAGCCGAGCAAGTGGGGATCGACAAGGGAGAAATTCCAGATTTAGCGAAGTTTGGTGATGTGCC ACCTGAATATAAAACAGCCCCAAGTAGTCTGTTAGAAGCCCTTGAGCAGCATCTGGCATCCATCGAAAGC AGCAAAAAGTCAAACTGGAACAAAGCCAATACAGTCCAGACAGTTTTAAACGCTTTCTCATCATCAGCAG CATCCATCGACGATAACGACAAGAAGAAGGCCCTCGAGGACGAGAAGGCAAGATTAGCAGCACTCAAGAG TTTTAGCCACACCTCTCAGAGTTTTAGCCACACCTCCCAGAGTTACAATGAAGTGGGAACAACCATCCTG TTTGACTTTAATGATCAGGAGCAAAGATTGAAAGAGACCCAGCAGTCGGAGCAGTCCATCACTTTCACGC CGGAGCCTGTAGTCCAGAGCACCCCACAGATGGCAGCAGCACCAGCAGCAGCTCCAGCTCAAACTTCAAA CCCCTTCATCACCGCCCCAGCGCCAGCGGCACCCCAACCTGTCGCAGCATCAACATCCGGCCAGGATCTG TTTGCCGCCCCCGCAGTGAACAACAACAATCAACCAGGCATGAAGCCCTCACAGGACCTGATGTTCCTCC AGTCCAACCAGATGACCACCATTCTACATGCTCAGATGGCCACTCAGGCCATGACCTCCAACCAACCTCC GCAATGGGGGGGATCACCAAATGGTTTTGCAAATAATAATGACATTGGGGCAAACTTTGACAAGGCATTC GGAAGCAGTGTACAGCCAGCAGCCCAAACCACCGCACCCATCATGGGAGATGTCCTCCAGCCCATGAACC AACAATATGTACCCCCCTCACAGGCAGAGGTCATGGCCGCCAACGGGGGCAAGAATCTCGACACAACACT CGTCAAATTGGCAACAAATCTTGATATTAAAGGTGTAGCCTCTCCTAAAAAAACTGCTGGAGCTGGGAGT GGAAGTGGTGCACTTGATTTTGATCTTCATGGAATGGGCCGTTTGAAGACGGAACATCAGTGGACCAAGA ACTCACCATCACAGAGGACCGGAGGGGCCGGTTGGTCACCCCAGAAGGGCCCCATCGGGTCATCGGCTGC CCCTGCATGGGGTGTTGCAGCAGCAGCCCCTATGGGAGGTTACATGGAGCTTGAGTCTGCACCAACACCT CCACCACCAAATACTACCATGAGCGGTCAAACGGCCGATTGGAGGGGTCAAGCATTCTCAGGACAATTTG GTGCTCAACAAGCAGGGATGGCCCAACCTGGAATGGGCATGGGTGTAAGACCGATGGGCATGGCACCCGC GGGCATGTTTGGACAACCTGTTGGAGGTATGGGTCAACCTATGTATAATCAACCAACGAGACCACCTACA CAAACCCAAGCACCCGCAGATCCATTCGGTAATCTCATCTAGCTCCACAGATGTCAGTCATCTCCACAGA GATATATGGATATATGAATATATATATAAATAGATAAATATATAAATATATATATATTATGATATGAGTG CACATTTTCAAAGTGGAGAAAAGAAGCTGTTTGTGACCAATTATGTAGAAACCAGCCCCACGAATCAAGA ATTTTTTTTCTCGATGGCGTCCACTCTCATACGTTATATTTTGTGATTGAGCGATTCCAGTTATCCATGT TTATGTTAGTGCAAGTGGGCTCAAACATCAAAGATACATATCTTTGTATTTTCAAAGTGTCATTTACATG GACTGATTCAATAGTGCTATACCCTGAAGATTTAACCCTTTGCCTTTGTCAATTTATTGTTCCTGTATTA TGCATAGGAAATGAGATAACTTAGTAGTGAACAGGTTAAGTGAATTTTCATGTTGGATTTGTGAACTACT CTTGCACACAACCTACAAGTTCTTTGTCATGATGAATACATGTGTATGAAGTCCTATGTCCATAAACACA AACACAAAGGACAAAGTCTTTATCTTGAACTTCAGTATAAGTCATTGGTTTATGATGATGGAAGCAACAA AAAGGGCCTGTTTTTTAAGGCAAAGCGTGTTACGCTGTGAGACAAACAGTGTGCTTATATAGGTCAGTTA TGGATGGTATGGCCAGTTCTAACATATGGAGCTTTCAGCTTTGTTAGACCACTAAACATCAGCTGTGTCT CTGCACCTCTTACAGACGCTGGGCAGTTCCAGGTATGATAAGATCCCAGAAGTACATCGTAGTATGTAGT TACATCTAAGGCTTGTCAACATAGGACATGGTACACTGCCACAACAAACCAAAGTTTCTGTGCTTAACTA AAAACACTCTGAATGCCTCGTTCAGATGTCATGCTGCAAAACTGTAGTGTTTTTAAAAAGTTTTGTTACG ATGACGTACACAGAGCTTAGTGAACACGGGCAGGACCTTTATGGTGCCCAGTTACCATTCATTGACGTGT ACAAAAAAACTGAGGCGGCTTTTTTGCGACGGTTTACTGTGTCATATCTAATCGAACCTTAATTGTTCTT ACATTTGGTTTTGCTGCGGTAGTTTTGTGGTTGTTATTTAATGTGGGAGCCTTGCGTTATTGTGTAGGGC TGCTGAAAGATCTATACCATATCAATCTTGTGTGGGTTTTTACGTTAACTTAACTTCTAAACCCTAGGAT ACCTTAGGTTGAAACCCACTGAAAAAAAAGTATTTTCAAGCTAATATTGAGTTCTATTAATGAAATTTAA TTTCAAGAGAAAGTTTGATTTATTATGATGCAATAGATGAGCTTCTGGGAAATAGATGGATGAAAAAATA TGTGCTCTATATCACATTGAAATGCACACTTCAGATCATGTTCTGGTTTCTTAAGTGTACAAACCTATGA TTATTCAAGAAATTTCTGCACCATTTGGAGCACACACACACAAAACAAAAATCATTCAATAATCACCAAT CATTTTGTACATATGAATGATCATCTTTTTGTCAAATTAATATTTTATAATATGGAAAGCAATGTGTTAA ACATGTAACATATTAGGAAGACATCCTTTTTCAATGTCTACCTTTTGATCTTTAATATATACTCTAATCA TGACCCTACTGCCAACGAATATTAAGTAGCGTAAGGTTTGATGTAATGAACACCTTCATCATTGGAGCAG TGTTAATTGCTCACTTGAATGGAGACAATTTACATATATACTACCTTAAGAATAATAGGATATAGTAGGA TAAGTGTAGGACCATGATTATGAAACTTCATCTTTGCGCGACTCAAATCTTGTACATCATCATCTACCTG AATTTTGGCGTTTCCATTTATAGATTTTACTTTTTCTTAAATATAATATTGATGTAAGAAATATGTCATG GATATTTCAAATACATGTATGAATTTATTAGGTGTGCATATGTATTTTTTGTACCCTCGCCTTGTATGGA TATAGAAGGCATTATGAATTTTGGACCAGCATTAATAAGAAGTACTTTGTTTAGTGGATACTGTGCTCGA CCATGTATATCTCCAATTGTCCAGAGCTGTGGTATTTAGGGAAAATGATAACTTAGAAATCATCATCTGA AAGCTGAAACCAAAATTTAAGTCAAATCTTAGATGAACTTTGATTCGGGAAATAGATGAAGTTCTACAAC TTTGAGATTAGTTTATATTTTAATTGCCACAACACGCATCAAAATTGTTGTTTTTAAATTTATTTTGCAA TGATGTTTGAGGGGTTATAATATGCACATGAAGATTGAGCATTTGTATGTCCCAAACTAAAATGGAAGTT GACTGTGTACAGATGATGATTTGGTTGGGAGTTGGTTACAATTTCATGTGTAACATGCATTTTGTGATGT GTAATTCAAGACATTTTTCTTAATCAATATGATTATGTTGAAAAGTTATTGGATTGCATAGAAGATTTAT CACGGATTAGACATAGAATGTGTATATTTGTAGAAAATTACTTGTTTGATAAAAAGGGGGAAAGTTATGT TATTTCTTAATGTTTATTGTGTGTTGGGTGAGTGTCTGTGTGCATATTATATATTGGAAAAATGAATTGA TGCAGGTATGTAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds