Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111565.1 TSA: Strongylocentrotus purpuratus WHL22.435066.0 mRNA sequence TTTTCGAGTTTACATTTGAGCGTGAGTTCAAAGTGGAGGAGACTATTGAATTTTCTGAGTTTTTGACGAT GGTAGCAGAGCAGACAACGTATACTGCTACAATGAGACCATACTACACAGCTTTCTTTGCCGTTGACACG AATCGCGACCGAGCCCTCAGTGAAGCCGAGTTGCGTAAAGCGCTTTCAACCACTGATCCACCGATGAAGG AGGAGGATATCGATGCATTGATCAAGAAAGCCGGCCTTAATGAGGCCGGTAAAATCGATCTAACAGCATT CGTTCGTGTGATTCAGGATTCTTTTCTGCCACAATGATGAGTGCTTCTACTTTAACATCGACAACTTGTC CTTTTTATTCTTCTTGAGGAATATGTGGGAGAGGGCCATATAATCGTCTCGCATCATTTTTCTTCTCTTG ATTTCATTATGTTCCGATGATTTTTTTTTTTTGAGCCGTCACTTTTTGTTTTGTTTTGTTTGTCTTTTTT CAAAGCTTGGTTCGAATTCCACTTCAATTTATTTCTTTACATTTTTTCATAATACCGAGGGTGTTTTTAA AATGTTTGTGTACTCCTTCCAGGAATAAATGTTGCGTTTTTCCTCATCTGAAAGCCAACTATTGGTATCG CATTATTTGATACCTTTGACATCATGATTTTGTTTATTGTTTTTTAATTGTATCATCGTGACCATGGTTA GAATGGAGGTCGACTAAACACCAAAGAATATGCATGTCCGAAAAGTGACATGGTATACAAGGGATAAGAG GAATTTAACTTTCTTAAATCTTGATAGGCGGTAAAAGCACTTATCTAACATTACTTTAATGATGTGGAGG TGTCGTGAGTGATTCACTTGACTCATTGAATTAAATTGAATGGTCTATTGAGCATACTTCAATAGATTGT TATTGATTGTTATACATGTACTTATTTTAATCTTACAGTTACAGGTACAGCTTAGAGTTAGTTTATTATG CTTTTATCAACCTTGCAGGTTACATGTTACTCTTAGAGTTTAGATTGTTTGTACGTACTGTAGGCCTAGT ATAGTTTAGTTATACTCTTTGTAAGATTTGTTGTTATTATACTCATCATGTTTATACTCCCTATATATCT ATGTAACATATGTTTTATGGACCTCTGCCTTGTGTAGTTGAGTCTGAAATAAAGTTCTGAATTGAATTGA ATACTGAAAATGGCAGCACGAAGGCTGTTTTACAGTAAAGCACATGAAACAAAAAGCAAAGTTAAAATAA TTACTACATAACACTTGCGAGAATACAGTCAAAGATTTAATTAATAAGATAAAACGTTATGACAAAAACC CCTCTTAATCTGGACCTCTAGGAAGATAAGAGCCATTAACTTAATGACTCTAAATATAGCTATTCATCCG TATTATTTTTTAAGTAATTAATTTTTGTATTAATGTTCAGTATATGTATTGTGTTTGTTTATACGGAAAA TCAAACCAAACCAAACCAATCAAAGGCTTAAGAGCCCGACACTAACGTCCTTTGGCAAGGTATTAATATA CATTTGCCACTCTCCACCCAGGTATAAATGTGTACCCGGTAATTGCTAGGGTAATGGTAATTGCAGGGCC CGTAGGAAGAGCATTATTAATACTGATGTTGCTACCCTGAGTTAACAAAATTAATATTTATATTATTATT ATTATTATTATTATTATTATTATTATTATTATTATACGGCAATATCACTTACAGTAAAGTGGAGAAAATG GGTATATGTAAACAATTATATATGGGGCAATTTATAATCATGCAATGTTCACTAAATAAAAATCGGCTAA ATAATACTCTGATATTACTACCCTCCATTTTGTATGTTGTCTTTGAAAATTAATTTTCATAGTAGTTTTG GGAAATGTACATCCTTAATTCATGTAATTTATTTGCTGTGAAGAATAAATCATGTATTTAAACAAATATA TCACAAACGTTACTCGCTTCGTTGACAAAATGGTAATGACAGCGATGATGATGATAATGACGATGATAAT GATGATTATGACCGTCCTCCTCAAGGTTTGCGATTCAATCATTGTGATATATTATTATAAATATGATATA AAATTTACACAAATAAATTATCTAATATCCATTAGTAGTAGTCACTCTATGCAGAGCGAATTTATTTCAT TTTACACATAATATAAACAATGACAATATAATCCAAATAAACAACATATAAAACAGGAAATTAGCATTGA AATATCTTTGACAATTCTTTTTTTAGTCTTGTAAAGTAAAATTAATTAGTTACAGGAAATGAAAAATGAA CTTTCTTTGAAGCAATGCTAGTTTAAGGTGTAAGTTCGCACAATAATAATTTAAACTTTATACATTCATA ACTGATTTTTGACAGATTACGAAGTCAAAGAAATATGACGGATAAATACAACGAAACAAAAACAAATAAG AACAGTGACAGGATGACAAGATGAGGATGGTATATAGATGAAGAAAATAGGAGTGAGAGAGTAACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
