Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_776395.5 PREDICTED: Strongylocentrotus purpuratus prickle planar cell polarity protein 3 (LOC576048), transcript variant X1, mRNA ATACTTTTGTTCCTTTGTTTCCTTTTGTTATGTGATAGTCTGGCATTGCCGCCTCATTCATCTTCGTATT CTTTGAAAATAAAACCTGATGAGCCAACATACGAGTCACCTTTAATCTGCTACGATTTGTTAGATAGTTC TTTTCATCATTTACAAGTCGGCATCGGCTGGGCAGTGTTTGTCAGAGAATTTGATGCAGGGATCTTATCA AACACAAGTGCGGAAGATTTGTTTGCACTGTAAGTGTCCACGGGAGGACCACATCGTGATGGCGGTGGAC CAAGAGAAAAATGTCAACCGGATGATGACGGACTTCCAGAGAAGCTCTGCATCTGATGATGATAGTGGGT GTGTCTTGGAGGAGTACACATGGATACCACCTGGGCTCAAACCGGATCAGGTTCATCGCTACTTCTGCAG CCTACCCGACGACAAGGTTCCATACGTGAACAGCACTGGGGAGAAGTTCCGCATCAAGTCGCTGCTGCAG CAGCTTCCGCCTCACGACAACGAGGTCCGGTACTGCAACGGTCTGGGAGAGGATGAGAAGAAAGAGTTAA GGATGTTCAGTAGCCAGAGGAAGAGGGAAGCACTCGGCAGAGGAGCAGCCAGACCCATACCTATCACCCT GTCAGCAAGTATTTGTAACCAGTGTGGTGGTGGGATCAGTGCGGGAGACATTGCTGTGTTTGCATCACGA GCCGGTCACAATGCATCATGGCATCCTGGTTGCTTCGCATGCTCTGTGTGTCAAGAGCTCCTGGTGGATC TCATCTATTTCTACAGGGAAGGCAAGGTCTACTGCGGAAGACATCATGCAGAGTCCCTCAAACCTAGGTG TGCTGCTTGTGATGAGATAATCTTTGCAGACGAGTGCACTGAGGCAGAGGGTCGTAGCTGGCATATGAAA CACTTCTGTTGCTTCGAATGTGACACACAGTTAGGAGGTCAACGTTATATCATGAGAGAAGGACACCCTT ATTGTTGTCATTGCTTTGAAAGTCTCTTTGCAGAGTACTGCGATTCTTGCGGAGAGGCCATCGGGGTCGA CCAAGGTCAAATGTCACACGAAGGCCAGCATTGGCATGCAACAGAGAAGTGCTTCTCATGCTGTACATGC CATAGGTCGTTGCTTGGGCGACCATTCTTGCCAAAACATGGACTCATATACTGCAGCAGTGCATGCAGTC GAGGAGAATTTGGAGGGAAAGACGGCAAAGAGACCCTGCATATCGCCAAGGATAGTAGGACTGATAATGA GAGTAGGAGTCGGAGACCGATTAATCTTGATGAATTGAACCTGGACAATTTGAGTGTTGTTGCTTCCGAT ACAGGCAGGGAAACATCCCTCAAGAGGAGCAAAGACATGTCGAGGAGATCATTACCAGATCTGAGAAATG GTTCTTCAACAGACTACAGTAGACCTAGGAGTGCAATGCAGGACAGACGAAGGAAAGCAAACAGTTCCTC TTCGCAAAATCTGTCCGTGCACAAAGGTCAGAGACTTGATCAGAAGGGTCGGCCACAACCTCCACCAAGA CATCCATCTCACACGCAGGTGGATGCCAGGATGCAGGGAGGTGCAGTGGATTTCAGAACAGCTACTAACA CGATCGGAGGTGCAAGGTCTATGCAGGCATCGACTGTGAGCACTCCTCAGCATAAGAGATATCAGACACC ATACACTGCACAGCAACAACAGCCGCATCAGAATGGAATGAGACCAGATGCTCTGAGACAGGATGCTCTT AGGTACGAACAGCAGCAACGGGGGCAGGTGCCACACCAACAGCAGAACCCACACCAGCAGCAGCAGCAGA ACCCACACTTTAATTCCTATGGGAGGAACGAGAGGCAAGGTTTTCCTGAACACAGGTACGAAGAACCACA CAAGAACAACCGGCTCCGCAGCGAGAGCCACCACACCAAACTTTGTGACAATTACGAAGAGCTTGAGCCT GTATCGCACCACAAGGACATGCAGAGGAGAGCTTCGATCAAGTCGGAAGGGGGCGATCGCTACAGTCCGA AGAGGAGGCCCAACGAGCATATGTCACGGTCAGCCTCTCACTTTGATCGTCGTGCTGATACCTATCACTC TGAGAGGGGTCGGGATGGTCAGTACGGATCTCAGAGGATGACAAGAACTGTCTCTTCTCATATGAAATAT GATAAATACAACAGGTATGAGGATGACGACTACTCCTCCTCTTCCTCTGATGATGATGATGACTACTTCA TCAGCTCCCGGAGTTCATTCATCAACGCAGGCCCCAAGATCCGATATGTTGAAAGGGGTCCTGCTAGGGT ACAGATCAACACCCTTCCCACTGTACATTATCCCAAAGATGGCAAAAAGAAGAAGTCCAGATCCAAGAAA AAAGGCAACTGTGCCGTCTCCTAAGTGTTAAGCTGAACAAAGATCCACTTCCAAATTTACGTTTTCCATT GTATTCCCAATTTTTATTGACCACCAAAATGACATGGGAGTTCTTTAAATGTAAAGTGTATTCGTAGAGT CAGTTCAAACTAGTATGAAGAGAAAGGATACATACATTTCATCTTGATAGTCATAGTGGTGTTTTAAAAA ATCTTTTCTTCTTCATACTTAAACATACATGTAAATCATGATTAAAGAATTATTATTGACTAAATTGTAA TCTTTGTTTCTTTTTCTAATGGGTCAATTGAAGAAGAGGGTCTTTCTTGGACAATGGGATCTTTCAAAAA TGCATGAAAGGCACCACTAAGTTTGCTCAATCCTTTTTTTTCTTCTTTCCAATTGACTTTTTAAACTGAA TTATACATGTATGGCTGAACTTTGGAGTAAAACCATCTCTGAATATAATTTTCTCTTTGGGGGGAAATAG GGGGCAGGGGAGGGGGCCAATACAAATTACATGTATGCAGAGTTTCTGTTGTCACGTATCTCTGCAAAAT TGATAACACTCCTATGTAAAATACTAATTAGTGTAGGGAGGTCTATTTGAAGAGGAAAAAACTCCAGAGA ATTCAACAAAGAGCAGTCATTTTATCATTTTTTAACAGACTTGCATATCTTGCATATTTCATGTGATACT TTTAATGAAATCATTGAAATTATCATTTTTCTACGCACATGATCATTGCTTTTAAGTGTTCAAATTTGTA CAAATCAAGAGAAAATTACCTTCATTTCATGAGTGCAATTTGAATCAGCGTCAATGGGATATTATTATGT TACATAGTTTGTCATTTTACGAGTTGAATGCCATTATGTCGTTATCTCATTGAAAAATTGTATTCTGTAA TTGTTTTGATGTTTCAGACAGAGTATTCATTGAGCCAGAAAAATGAAGGACATTTGTAGTTATGATCAGT ATCAAAATAAATATGTTATGATCCTGATCATCATTTTATGCTCAAATCACCTTCATGCAAATTTGTTGTA AAAATACAGACAAAATGAATACTTATCATATGGATACAAGATGATATTGATAATTTCACCCATAATTTGC TTATTGATTTATTTCTTGGAAAAAACAAACTGTGCTGTGAATATATTGCAATTTATTAACTGAAATTAGA GAAATCTGAAAAATTGATTGTTGTGTTACAATACTCGGCATAGACTTTATTGATATATTATTTTTCTCTT TTTTTATATCTTACAAAATTAATATGGGAGTAGTAAGCGATCATGGTTAGAATTCTCTTGCTTGCATACC TTATCATATTCAATCACTTTTGGTGGATATATGAAGGAATTCATGAACATTTAAAAATGTATTTCAAACA GGTAGGTTGATATCCGCCCTGTGTATTCCAGTCCTGTTTTTGTACTTAAGAACAGTACTATTACAGTTCC ATCCTTTATTAAAGCTACCACTGTCCATTCTTAGTATTTATTTCGGCAAATGCCGTCTAAACCTTGATGA ACATGAAATTCAAAACTAACGACTAAGATATATTGGCATCTGTTATATAGATGTATAGTTTGCTAGAATA GCATTTAATGTTTGAAGCTATTTGCTGTCATGTGCGAGTGCATCATATGGTATTTGTAAGTTTAATAGTA ACAACTTTCCATTCGTAAATTATCAACTCTTGTACATATATACATACAGAAGAATTATATAGTTCATGAT GTACATGTACATATACAATGATTTTATGGTAAATACATGTATCTGTTCTTGTAAATTAAGAGTATGTGGG AGCTTGGGATATTAAGTAAAATTTGAGATAAAATATTTGGCAGTATGATGTAGTTGAAAGTTATGGCAGC CAATATTAGGAATATTTACTATCAATATGTATTATGAACCAAAAGTAATTTATAATATATGTTCATATTG TTGATGATTTTAGAAGCTGTTTATGTTATTTTAGTGAAATATTGGTGCTTTTTTTAATGCTCCATCTTTT TCCATTTAGTTTTTCCAGAAGTATGCAGTCGGTGAAATGGCAAAAAAGAAAATAAATTCACAATTCATCA GTTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds