Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XP_038054836.1 probable E3 ubiquitin-protein ligase HECTD4 isoform X3 [Patiria miniata] MASGTTDSTQWMCVNEESLFLHDGLIRVTDLVQLPRDVTTSSEADRENEVVSFDTKDPAELTERLLSVCG TNNNAYAYSRLMEYRLNALKGLWNAHRQINSNIEQIEKEASSHEESISLLKKQGLWQQPEQVSFSSRVGL LLVFPLLKSQKKQDPELCAETAKLLLNCLRDCPPLSLTKEPGDCLLGLENLLCSWLIEGSKLLQESDADD VKKEELKSQQQDLAAALVALGCARGSTSTIIHTVHLLQQLQASLESLPVADILHKLLRLEGGPGCTSSLL GSKHMVCWGFEDMLSEGSKDGEEKEKEKDTTDIGRSLTCDGKFLYTTSSHGKGLAKFGSGLAGTLRGFIY AKRQDLGQGWVAYGDRQLVHRALESDGHPEQLCTILDPQTLKTRTEVEVPQSLQIPANRVTITLQSDGTY LYWIWCIVGADKSGKGQPVCMDVLRLEENDGTIIAHPISTRIVLSRKDESLKVVGDPLLTRLRTYRYSTA ATLAMLTGQSTTSTSTKEDASTTSCGLTLKLLRKTPVFTCGNSVVMLTAPPGGNNNSSSRSIFNAGSALG TNLCFSAKDGSFNTRVDFVDAPTCSVARGSPIVGLGVCYDATNNVIWTCSNDWVDQWHNPGLRAAHHIEQ QMGMGSALEPVPEGSLISIPDIFKMLLHHVGSNCCHRIHSDILQSSLGQMLMRQRTLDVIHLRRVGDILD KALKEGDRPAAQCMFIVLQVLFKCHTFRSTKKEDVECLQQAGSLAWQVLVDGNYSTEHEGLQREACNTII AGLTVLYSTEEEQNALMHKLLLEGESKPALGRLRDLILGVMGQLLRLEGNDTDLSGRLKDDLVQLILKIS VKEACVLLRRCQQASNKEFENIISTVPIASPCLQYMMALQINLLRDGALCKPKPEEGTTPPAGESSSSLE ELQQSILNLAASVFRGCEEVLESLVQVCQFIINASSPADWDTRFQGLERVVKGTILGHLLPVLITALTHE NLQSLSLAEALIPQVVKLIILTSQVSQMLLKCYQIRDSLAIEDPTSPGPDSTPTIRATPETPDPGFLAGL KIPAPWATGKTVECIHPVRDNYKFRETVHIPGARCLYLRFDPRCASQYDYDKVIVYAGPNSSSRKVAEYG GNTFGFGSRSVLGSGWPKDLVKVEGNTVTFTFEMRSGREHNTPDKAMWGFACTVRAQQESTEDASGGMPF LADLALGLSVLGCTMLRRLYKGPEKSLQEEQSEHLLKSKLLQRCVWHPQAMKQAPKLPAASAGKKATDSD STDHCKTLPRIKLSADIMQRLQALSGRMAPHLRPSIREVIQPAALEEAVVSAALKHLDIEGAVLLLGDGT ISDQQRGSYDFLCQVMNGVYRRIYAIQRQLQLLAELEQKWDHDLDEMRNGSLESGSSFFALHHHQENKMR ELELLAYLKDVDFESADQEEAIKLLREKLEQEASLKPSDEPKLSMPKTRSLVQAILERVELLLHVTIATE SLQSHPASLSRSVSQHPSNQQRGFVFEPSVPPPSPPFTRSVSLPMELEGGKQTNKETNKSTRTRWQSRRK GPLSLLQDLAQGEGKQTDKQAHTVLLEELFSFIGTNPEQAVSLESFLSAARVRWRRGNTRKQALVHIKQL LLAASKVGGAMHLLTAVTAVIQNGPRVNELACGGMVDDVQQTFSETMTSVVTLAGAHPVACANSIGLLCT IPYTRREEQCLVDSGLVQVLDQLCSLGSSSGGSGGIGAGSSESQTTRQLVSALAWAGFQVLASRCVSWEA DETSHDALGYAGLARQVSSLLTNHLARATETSGNEAAGSEALQEVLSLLNELSRSRMGKAILSQPACVSK LLSLLLDQRPSPKLVLIILQLCRVALPLMSAEDCASVQLPCWGQEEVTTLLRGADGGGEGEREVEGEGQL GDPPAKIASLLLAKLGDYVVPGCQTTASSDVPSSTNGDGTQATAPSSGDRDKGEESEAQDGRISVFILKR DDQSSHEVIQQLLSSDGRPFRLGSGANMERVVRMDREMTKYGKAEVFTEDANTAIRKASKWAQSGLVVST GPPVENNNDSSNENGKEKKKVVTEVVCREKNAELARTDPVRPFISGHVANSMASEVIALLHSLLTAPETH TALIWASAVERVLSHALTMVTQLTSHQTSHIGLLNSQPQGESVTRLMSVCRQVVAAFCALGGFKESVKVG SKVQVTGEGSRPLLGHVISISEPQGVATVEFNITKDMSIPRANSTLEVPLSRLQPPRSETLPLQQLSMTE RVVSALHSLLLPRNERGMSPLTVALPAVGDGSSLAMAACRVLAEIRSRACAVLALHMKEPSFATEFVKQS SLPVEVLKSLAQQCSSGERVSVVEAQCQRLRMLYRDCARPPPPPAKITSRMSQDISWNPSRSFPPPRACF FSHNQTAVTFLGDANAGTGLPRGVMCYATQPVPSQAPSFYWELEICSNGDSGDEAGPSVSFGFAPSAEKK EGAWTNPVGTVLFHNSGRGVHYSGASLLQWKSLRLDMTLNIGDIAGIGWERDADWGNHGPGQQARGRVFL TYNGRRLSATLDGVAGGMWPVVHVQKRNTRVRANFGARPFCYAEGRQHHDAAVEAIDPREEILANFSLLP FHAALDESNGEGENSGGAVDVPLMEAVGETVPTGPPCRLVVPPKPLTEYDTDESVNYKLRQSYNSFTTMG ADVRILNAGQDDTRDDEEEGEQDTHEDFHALLVKAWESKVFPVIRRRFRNEAERRSGLEQIKGALQLGMT DIARQTVEFLYEENGGMPRDLHLPTIEDIKTEAAKFTIDKVRKGTTVVIRQPENTGSAGSTVVPKFAVRA MLKTFGLTGMVLDIESRVELVQVETYLRSEGVLVRYWYPLDMLERPQSGYRRGALTGLAALDISNINIHR ELLHCESTSARMSCRTALMEFLGHCQSPEVIEVIPCSLTSGQASASPEQDISHLQLLSNQLLESPQPDGA LQASSLLTAQWLHQCLASNTRCLADIFYQDTQILRRELFIAMATAAHMGESRLLELTNQLCGVLQVAPHH FPCEITTVTETKVNTDLQFPGAAAVIVSCQQDPKTARKEASLYQAPWARVFCYGIGHRVKKTGQTVLLEV VSYPADAAINSSAGLSAPPSHNIDPYPTMVLPCNRVHVRHGVSPVPGYVVSLHGLPSEFPLAMAFIETLV GCEHQIGSQKVEGMEEIVIDRLKDIPTERQEILKDRPAHIPPRVISRAAELLSHYLMTTKVPPLIKEYLF HMLAQLLRMLYKRESSGDSITAAATTFPFVVITQLLHLNVELRKLFEHESTSGVLSSITPGQQSTYFQAL MELCLALAEVTSPPGLGAQLAPSAHATPSVQLSPQAAAKRKKVKIRRTGAAVKRSPRPSESDSGETSAST SSKPEEMLWFHRALTVSLILRYLIDGNPQGSTVTRDAILDAHQSNSIPSTHSRLLAISGIPKTLEEQTVR KAIERACSSHGGLYKQELWIPVQDQKPPEDSPDEPNTTNTTPVNLPQPDPPLGASISSPDPSPLAEASAT TTLENQSSDTQHSAMAAPLSDQHAELLTPPPESEATPDVEQNKETSDNLEELKQCVKGYAVLEVRCKAKI DSIENALLTSKEVTEAMQVETAAILDVSPEDFLTVSAVNSSLQTELTDSSEFQEYLKHKLLMEKPPRELR TLAVQSLEQVFYSCLAAEQGFKLLSELEEKDMDTAEVTLSKEQMLSLAPGNLLVPFFGEVKGSKHTAQEE VTQVLEKYGVNRLSTTRPKKPSAKPSKEQSRTVNRRGSKTSKEKLAAADVSFKGKSASPSDKKSKRPEKV ARDFPEKRQSEDGRAKQEMAQERALSLGGFLQYVTDRAQEDATPVWKALMACGFDFHFDRFASLNHSDTP SYFKHWTHDMDAALVCYVDRLCRKFSITPARLHPHEVYFTEDDLVNPKFAPLQGVPLEVLRLRFALLQSL SNNLEAYFLPLVDLRPSQTLSLSTAALISRARRILFYDTKIKFFNAILDATAQRNLDQAAPEITLDPLEI VGADAQDCLATQFCQAARQLSIVPSSKLCVKIASGGDPTYAFNVRLTGEEVHGTSGSFRHFLGQVTRELQ SSTLGLLVLCPSAGTGRNKGRYLMRPGAITFPEEKLLEFFGLLLGIALRADIPLALDLLPSFWKCLVGAP LDPERDLEEADCITYSYLKRLTEVQSEAEFDALCAEVSSHHAPELESPDPDPAPGPSTGPSSSQTDTPSH NLTFVYNSLGGAEVELCTEGRTRRVGWKNRQQYISAIRDLRLRELASPERMLAVRCGLASVIPIHLLCMM TPHDLELRTCGLPTVDLDFLKAHTMYQVGLVETDTHIQYFWSALESFSQEEIARFIKFACNQDRIPCTCP CRDGEADTSHVPPYPMKIAPPDGTGGSPDTRFIRVETCMFMVKLPQYTSQEIMTRRLLYAINCREDPMSG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds