Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT120350.1 TSA: Strongylocentrotus purpuratus WHL22.77417.2 mRNA sequence TAACGGGATATAGCAGAATGCCTAAGGCAAAGCAGCCACGTGATCGTCATTTGACTTTTAATGCTAGCCA TGAACTTGCCGAAGAAGATCGATCATTCCTGAGAGTTGCATCCTTGGGAAACTTTGCAAAGGTCCGAGAA ATCATGGAGAATAGTAGTGATCCGAAGAAATTGATGCAGTTGACAGATTTTAAAGATTGCACGGCACTCG AGATTGCGACTGAAGCAGAGCACTTTGAGATCGTGGAATACTTGGTGCAAGAATTTGGCGATCTTATGGA TGAAATACACCTCCATGAATGTCTTATGCTGGCTATTAGCAAGGGATATCTTCGCATTACTCAAGTTATC CTGAACCATCCTCTTTCTGATGTCAAATTGAAAGGTACCTGTGGTCGCCAAGATAGATTTCATTTCTACT TGACGAAAAACAACTCGAAGTTTGATCGCGATTTGACGCCACTGATGCTTGCTGCACAGTGCAACGAAGC GGAAATCATCCGGCTCTTACTTGATCGAGGAGAGTACATTCAAGAACCACACGCTATCTTCTGTAGCTGT AAAGATTGTACAGAAGCTAAAGAAAACGACCCCTTATTACGGTCGTTAGCTGGTTTGCATACATACCAGG CCCTGGGGAGTGAGGCGTATATCTGTTTGACGAGTCATGATCCTATACTCACAGCTTTCCTGCTCAGTGA AAAACTCACAGAATTAGCTTCCATCGAAAAGGAATTCAAGAATGAATACCGTGAGCTTGTGAAACGATGC AAACAATTCGCTTCAGATCTGCTCGATATGTGTCAGACGACTGCAGAGGTTCAGACTATACTCAAACAGG AAGCAACTACACAGGGAGAAGTCTTTGCTGCAGAAGGCGCCAATACTCTTCGGAAGAGAAGGGGGGCAAA ACCAATATTGCCTGAAAACGACTCGGACTTTTCCCTCCCGAGGTTGGAGCTAGCTATCAAATTTCGTCAA AAACAATTCGTAGCACACCCTCACTGTCAGCATCACCTATCGACATTGTGGTATAAAGGCTTTCCTTCCA AGACCCGTCAATGGCATCCTCTTATCAAATGTTTGGCTACAGTATGCATGATTGCTGCTATACCATTCCT AACGCTGGCTTACTGGATCTGCCCTAACAAAGTCGGAGACTTTATGCGAAGTCCAAGGACCAAGTTCATG TTACATGCAGCGATGTACGTGACATTCTTACTCATCCTCTTCTTGGAGTCAGTGGTCTCTAAAGGATTCC GGAATGATGATCATCAGGATGAATTCATTAAATCACATATGAATTGCACTTACCTGTCACAAGCTGTTCG CAACCAGACATTTCATGAAGATACCGCACCTAGAGTCCGACCTGACTGTTTTTCACCCCTTCAGATTTTG ATCGTTGTCTTTGTAATGGGTATGTTGTGGGCAGAGATCAAGCAGATCTTCCGGGAAGGATACAAGATTT ATCTTCAGTCACTATGGAACTGGATCGACATCGCAATGCTCAACATTCTCATCTCCTCAATCTCCATTCG AGCTATTGTGGTCTACAAGGTTACCAACTCGATGGCATATTTCGATGAAAATGTCGATGCATGTGAAGAT GAAAATGGTCAGGCAACAAAACATCTCCGCTGGCTCTTAGCAGACCGAACGCTTTGGGACCAGTACGACC CAACACTAATCGCCGAAGCACTGTACGCTATTGCAAACGTGTTGAGTTTCTCTCGTCTCCTGTACATCCT ACCCGTCAATGAATTCCTTGGCCCTCTCAATATCTCACTTCAGAAGATGGTTGGTCAGATTCTTCGGTTC TTCTCTGTCTTCATCGTCGTCTTCTTGGCCTTTTTCTGCGCTCTCACCAATCTCTACCGAAACTACCCAC AAGAATCAAACTTTAGAGGGTATGTGAACGCCATCCAGACATTAATCTGGGCTCTCTTCGGTCTCAGTGA TGCTGCAGACGTTTCTTATCCTAGTGATGCCCCATGTGATCAGGAGTCATGTGGTCAGAAGACCACTGAG TTAGTCGGTGTTTGTTTATACATGGCCTATCATTTAGTCATGGCATTAGTCATGCTCAATATGCTTATTG CCATGATGTCAACCTCTTTTCAAGAGATCCACGATGATGAAGATGTTGAATGGAAGTTTGCACGCTCTCA GCTTTGGATGTCATATTTTGAACGGGGTGCTACTCTGCCTCTTCCTATGAATATTATTCCTAGTCCCAAG TCTATCTACTACTTCTTCAAGTGGTTAAAGAAAACCCTCTGCCCTAACTGCGGCAAAAAGAATATTACTA TGACACAGGATTTACAGCAATTGCCAAGGCGACCCGGAATCCGCAAACAAGTGAGCACTCATGAAAGCCT TATGAAGACAGTTATCAAGAGGTACCTCTTCAAACTCCAGAACGATAAAGAGGGTGAAGAAGGAGCAGAA GGTGAACTAGAAGAAATCAAAAATGACATCTCTAGCTTTCGCTTTGAGGTGATGGAAAGGATGAAACACC TGGACCCGCACGGTGGTGGTGGTGGTGGTGGTGGCAGTCCGAATGTGACTTTCTCTCCAACATCAGCTCC AGTGTTTCAGGAAAGAAATCGAACAGATTCAACGGCTAGCAACAAGCAAGATATCATGTTTCGTAAAATG TACATGCTAGAAAACCGTGTTGAAAAAATGATGGACTCTCTGGCAAACTTTTTTGCGCAAACCAACGAGG CTTTGAGATCGGATGTGATGGCAGACGAGACCGTTTATAAGTCACTCCGAAGACAGTCGGATGAGGGAAC AAAGGTTGATTCATGTAAGACACATTAAATAATGGCCAACTGTGTATACAAGCCCAGGCTTATTAGATAT ATGTGTATCTATAATTTTCCAAACAAATTGATGGCAGAATGTCGGCCATTTTCGCAAATTTGATGATGTG ACTGTTATTGGACCAACATGGGAAACTAAGCATTGAGCAAAAGCAACAATTATCATTATCTTCCCCTTTA AATCCCACAACAAAACATGAAAATATATTGTAACCATTATTTTAGGAAGTAAAAAAACATGGGCTCACGA GCAGAAATTGCCCAGAGCTATCATCCCTTCTCGAATCAACTTCAGAAACGATTTTTAAAAACTAAGAAAT GGTATCCTCTGCAGTACCCAAGGGCCCCAGCTCCATTGGCCAAAGAGCCTAACTGGATATTGCCTGTGCA AGGGAGAGAGAGAGAGGGAAAGGGAGAGATCAATGTCTTTGCATTATTTATCATTATGTAGCGTTTAAAG TTTATTTAAATTAATGAAAATTGACTACCTCGCTGGCCGAATATTTGGTGACGTTCGGGGGGGGGGGGGG GGGGGTACGCGCCTGATATGAGATGTGATGGTGAGTGTCTGTACATTTATTCTTGTATGTTCAATGATAC TGTACTAGTGTTAAACCCGAATGAAAGCTAAGGTTTTCCCCCTTGTTTCCTTCGTCTTCTATTTCTTCTT CAACTACAACCACAACAACAATTACTACTACTATTACTATTTCTACTATTGATTATGATAAGAGTAATGA TGATACATGTTTGTAATAAAACAACAAAATCAAGTACACACTATAAAGGGGGATATTTGCTGCTGTTCAT AGATTATGTATATATGAAGAATTCTTCATTTAATTCCTATATATTTATTCAAAATAATTCATGATTTGCC TTATATAACATAAAACATACTTAAATGTATGCTATTGATTATTTCTTGCTAAAAAAACAATCCAATCTTT GCACGACTGGAATGGAATCGTTTTATCTTTTTTATTCTGTTTTTCTTTATGAGAGAAGAGAATAAAAATC GATGAAAACAAAAAAAGAGAACATCTGATAGGTTCAATGATTTGGTTACTGTTTAGGCCTACATAGTTGA ATGCTGCTATTATAGTACGTATTTGTTTAACTATTTTGAACAATCATGTAATGTTTTTTTCTTCACATGT GGAATATCTTATATTTCATGTAAATATATTATATACAATGCTTGTTAAAACGTTTCTTGCCAATGTATGT AGCAAATGTAAAGATCAGTGAGAAAAGGATTTGTTACACCCTGTGTATTGGTATAGTAACATTAGTTTTC CTTCCTCGGTACACTATAGCGTACTAAGCTGTGTTTACAAACTTACTATCTTGTGCATGTAGATTACGCC TGATTCCTATCGGCCTTAATTGACAAGAAACCGCATTTCGCTCAATGTATTTATTTAAATATCATTTGAT AAGATCCAAATTTCAAATATGAAAGCAATATCAACAAATTAAATATGATATCATATTAATTTTGATTACA GTATAAATCCCAGCTTTATAACGAGGTGTAAACATGATTGATAGTTCAATTATAAAATGTTAATCGATGT GGAATATGTGTAACAATCATATAATTTCAATATGTTCCAATTCGTGATTGTTCTTAAAGGGTAAAGGTTG TTGGCTGGTATATTTAATACAGGGGTTAACAAAAGCAACAACAACTACTACTACTTATACTGCTACTAAT GATTATAATGTTATATCATATTCAGTTTTATTACATTATAAATCCCAGTTTCATAATGAGGTGTAAACAT GATTGATAGTTCAATAATAAAATGTTAATCAATGTGGAATATATGTAATAATCATAATTTCAGTGTGTTT CTTCCAATTCGCGATTGTCCTTAAAGTGCAGAGGTTCTTGGCTGGTACTAATACAGGGGTTAACTGGCTG CATAATTGTCTTGAAGATTGAATAGGTTTCCAGGGTGAGTTTGCTGACATTGTTCACCGAAATGATGAAA GCATAATCCATATAGTTTTGGTTCTACGAAACATGTTCCCACAAAAATTCCTCCGCAGTTAGTTTTCTGC ACTACACTGTATCTGAATTCCTATAATTTTAACTTGAACCAAACACTATACCTAACCCTAACCCCAACTT CAGTCCTGTACACTCAACCTAACTTCAGTCCTTGACCAAACACTTTGACTATATCTAAGGTAGTTCAGGG ATGAGACAGGGAAATTACCAAAAAGGAGAAAGATTAAATGGGGGTCCGGTGGTTTGGGTTATGCTTAGGA AAAACAAAACGGTTTTGAAATCTCGAAATCGGCGGAGGAATCCCATCCCTGGTAATTGAAGCTGAAGTTA ATTTCCACGTCCAAATATTGATGATAGAAAGATTAAATTAATAGAGCATTCTTGCTGGAGTAGTTCACTG AAATCTGACGATGATGGGTAAGATTAAGATTTTCCTGGGTTTCCAGGATATTTGAATCATTCTAGCTTCC ATTCCAAGATAATCTGGGCTTAATATTATGCCTCACCTCATACATTAAAATCTTAGCTTTCTACTTTGGG TTCACTCAAAGAATGAATAAATGTATAAATGAATGACTGAATAAATAATCACTCTTGAATAAAGATCAAT TATAGAGGTATGTCTCTGAATAAATGAAAGTCTTCATGTGCAAAAGTCATTCCAGGGTTATATAATAAAT GTATCAAATGTATATACATATAGTATGTTTCTTGTATCAAGCTCTCTTTGTGTTGACTGCTACTGGTATG GTGATTAATGTAAAGCAATCATGTTCAATCATACAGAAGACTGGCACAAGCAGTACAAACAAAGGAGTCT GAACATGACATTTCATCCACCGACATCTATTAACTTCATATAAATAGACAATCTCTGTATATCACATTAC AAGACGTACCATTAACATCCTTAGGGGAAGTCAGGATAATGTATTAAAGGGAGTGTACCACAACGAGACT ATGTGTCTTTCCCGTGGCCTGACTCAGGGGCCAATCGGGTATAATACGACTACAGACTACGCGATAGCAG TATTCATGTGCGTGCAAAGTACACGAAAGGGAAGTGTGAGGAGAACTTCCGTCTGTTTCGCGAATGCTGG CTGACAATAAAGTCTGTTCGTTCATGTGCAGTTGTCCAAAAGAAGTCGTAGATGGCGTTAACAGTTTTTG CCATGCTACACCCCTTTAACATAATTAGTATAGATACACTTTAGGCTAGGTACAAATGAAATACATTGTA TTGTAACTTTTTCATGAAAGCATGAAATGTTTGTAAATATATTATGAGTAGTTTAGAGTAATGACAGTTA CTGATTTTCCAGTAGTCTCTCATTCATTACATGCAGTATCAATAGTAATCTTATCCATTGCATACAAATA ACTAAAGTCATGTAACCAATGAGTTAGATACATAATTTCCTTTTTATTTGTACCATTAATGACATCTGAT GATCTACATTATAGCCTATATATGCCATATAATATATATCATAGGCAAGAAACTGAAAAATAATTTCAAC TTCGCATAACTTATTTCATGTTCTAAAATCTCCAATGATATTGACTGTATACAGTGAACATCATCATATA AAATAAACAAGCCTAGGGACCAGGGAAAGAACCTCGTTATACTGAATCTTGTTTTATCAGGGCTAAAATG CGATAGAAAACAAAAAAATTGTACATGCAAAAGATTTGTTAAAACAAGGGTTCCTTATAAGTTATAACTA TGTTCTCTATAGTGAAGTTCACTATACTCCATACACCTAATCTTATCTCCAAGAAAGTGACTAAAGTTTC TAGTAAATGAAGATTTACATTCCCATTGCAGAAAAAATCCCACTAGGTATAAAAGCAGCCATCTTGAATT TTAAAAATAAAATTCAATCATTAGTATACATTTGAAATAGACATCATACAATGTCATACTTGAACATTCT TCAGAATAGTATTCATAAGATGAGATGAATAAAACCATGGATCTGATGCTGAATAGAATATGATGGCATT TCCATGTGCTATGCTTTATGTGTTCCTACACTTTTTTGTGTGTATATGTTTCTGATTATGAGAAGCATCT AACACAACATCTCAACATGGAATTTTTTTTTGTAATCAGTCAGTAGCATGGCGAAAAGAGTACTAAGGCC AATTCCCTCTCAAATCCAATGGTCAAAAAAGAAAAAAGAAGAAAAAGGGATTCAAAATAAAGGGAATAAA GAGCAACTAAATGTATAAAAATGCAGCTCCAATATGCCTCTCCCCATATGAAGGTAATTCATAATTACCC TTTTCCAGTACAAATGTTTTCAGTAATACATACAAGGTGTTTGGAATGAGAAAAAATGATTCCATTAAAA ATTCATGCTTTAATCTAATGAACTTTAATGGAACAATTCAATCACAAAATAATGATTTACACAACTATCA AGGAGACATCTATTATAAATACTGCACATAAATCATTTATCTAATGACCTGTCTCTAAATAATATATTGA AATAATATTGAGTATTTATAATATAAGTTCATTAAAAACAATATGTACAATAGCACTTACTTAACTACTG TAAACTCTGCTCACTTTGCTACCCTATTGAGTTTACTACTTCAAACAAACTCATTTACAGCACTAATATG TCATAACTATCATTGATTAAATGTTGTGATCTTTGACCTAAATCCTCCACCTCTACTTAGTTTGTCTCCC TATATTGATGCATACTATTACTAAGTTTGAAGTTCACAGCTCAGATGGTTATCAAGATGGTTATCAAGAT GGTTAACAATGCTAGAAATGTTTGATTTGATGTATATGGATCTATATGACCTTCAGCCTTTTCATCTCAA AATATACTTAGTTCATCTCACTGTCATGACACACAGACACTAAGACAAAGTTAAAGTTCACAGCTAAAAT GGTTCTTGAGATATCATGATAATGGTGCTGAAAAATAAAAGCTGAAAAAGAGAGGGTATGCAACATACAA AGAGACGCTACAAATCCCTTCTCAAACTCTCCCTTTACTGAGTAGCCTTGTTCTCTTGTATTTTATGATC TATCTTACGTCTTCAAGGGTGACTTCAGATGGATAAATGAGTACATGTAGCAGTCTTGATGCACAATCAT TGACTGTGTACAATTAGGTTAGTTCCAATGTTACTGCAAGAGCATTACCGAAAAACAAGGCACCAGAGCA CACTGGAACTTCCTCGTCCTGCTACTCATTCTAAGAAAGGTGCTCATGCCTGCTCCTACAGGCTGGCAAG CTGAAGGTCATGTTGGAATCAGAAACAGAGCTCTGCACATATGCCCTTACTTAGCACATGCATGCATGCT GTGGAACCCTCCTTATCACCGATACATGCTGTGCATCTTACTGCTTCCACATGGTCCAGGATGTAGTGAA AGAAGTTTTGGTTGGTGACACTCAAAGGACCGCTGAGGAGGTACCGGCAGGGAAGAAGGACACGTTCTTG ACACTCAAAGGACTGCTGAGGAGGTACCGGCAGGGGAAAAGGACACGTTCTTGACACTCAAAGGACAGCT GAAGAGGTACCGGCAGGGAAGAAGGACACATTCTTGACACTCAAAGGACTGCTGAGGAGGTACCGGCAGG GAAGAAGGACACGTTCTTGACATTCAAAGGACAGCTGAAGAGGTACCGGCAGGGAAGAAGGACACGTTCT TGACACTCAAAGGACTGCTGAGGAGGTACCGGCAGGGAAGAAGGACACGTTCTTGACGCTCAAAGGACAG CTGAAGAGGTACCGGCAGGGAAGAAGGACACATTCTTGTCTGTGATTTTGAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds