Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003729333.3 PREDICTED: Strongylocentrotus purpuratus pleckstrin homology-like domain family B member 1 (LOC577428), transcript variant X2, mRNA TCTTTGTGTGTAGTAAGGATGTATAAGTCGGTCACTGGAGGTCTTCGATCGTTACACCGCTGCGGCAGTG CGTAGGGAGTTCACTCACTGGTATCAGGTCACGCAGTAAGCCTCTACGAGTACACCGATACCAACCACAC AGTTTCTACTACCACTTCTCAACAATTACCACCAAGCCTACACAGCTCCAAGGGGGGATTCATACCAGTA CATAGTTACTACACGATCCACCCCTGTCTCTCCTACTCCCCGTAGGACAATGCAGAGTGTGGCAACTCTT CTGAAAACTTGATCAATAGGGGCATTGGAGTGTATCGGAGCAACAGTTAAAGGGGTCCCTTTTTGTCCTA GCCTGTCTGCCCGTGGTAGTAGGAGCATCGTTAATCTATTAGCGTACGCTTGAAGACTGCAGGTGTATTG AACTGATGTGGGGGTGGATAGTTGAGACTATTATACTCGCTATCTCCGCTGTTTGAACTTGCTGTTAGTC ATAATTGCGAAGGGAATAACAACTCCTTGACCATTGGTTGGAAGAGCTTTGTTCTGTGATTGTATAAAGA GGATTATTGTCATACCGAAGGAATGATACTGGGCAGTGATTCAGTGTGATCTCTCTACATTCAGGGGCCA TATTTGGAATATCACTACCGTTGCCACACATACCAAATATGCAAACAACTGAACTGATCGTGACGGATCA TGTTTTGACGAGCGAGGAACTCAATGAACTCAGGATGAGCAATAACTGGGAGGACAGTCTCAAACGGACC CAGAAGATTATCCAGGATGGGTCTCTTGAGCTGTCGGAGACGGGGCGTGCTCTCAAGGTCCAGTCAGAGC GCCCTCACCTTGTCAGTCTGGGTGGAAGTCGTATCAGCACTGCAGTGACCCTACTGCCTCTACCAGAAGG CAAGACAAACATTGGAACCAACGAAGCCAGCGTGAGGCAGGACGTCCTCATCACGGGCAGAGATGTACTA CCGCAGCACTGCTGCGTAGAGAACCTGAACGACACCGTCGTGCTCTACCCTATAGGGGCCTGCAGTGTGG ACGGGGATAGGATCACAAGTCCTACCAAACTAACTCAAGGAGCCATGTTGTGCTTTGGCAAATCCTGCTT CTTTCGCTTCAACAACCCCTCAGAGGCCAAACAACTCAAGCAAGACCTCATGGGAAGGAATGGCATCGAC AATGGTGTCAGGACAACGTACGGCTCAGATGCACAGAATGGAAATCATCAGGAAAATGGAGAGACGCACA ACAGCGTTGGTTTCACGGAAGCGATGACACCATCAGGTCGTCCAGTGCATCTCAGGTTGAACAATACAAA CAGTAATCACAATGCGATCGTGAAGAGCCCTCTGGAGGAGAGCATTGAAGCAGAGCTGAGAGAGATAATG CGACAGGTTTCTAGCGATGAGGATCTGTTATCGGAGACATACTGCAATAAGTACGCTCTGTCTGAATCGC CCGAGAAGCAAGACGAGAACGATGCCGTCTTTTCTCCCATCTCTGGCTTGTCAGCTAACCCGGATGTGTG GGCTGACACAGGAAAGAATAGTAGTGGTACTACGATGTTTCCCTTTGGGACTTCCATGGAGATGCGTGAG ACGGCAATATGTGATGATGACTTTGAGGAAAGTGATGGAACAAATGCCACAAATGATTACCAACCCCCTG TCAGTGCTATCAGGTCAAAGTTTGAGGACTCAGTGAGATACAGTGAAGGGGGATCTTCAAAGAAGCTTCA CGTGGGTGTTACAACAAGTCCCCATGGGACTCTAGAACACAAAAGAGGACCTCATTCACCAAGTCGGGTC AAACTTGGACAAAGCAGCCTGTATTCAAACAAAACACCTCCCAAGAAGTCGGATCAGATGGATCGTTCCT CAAGCGGATCCAGCCTTAGCTCAACATCCCTGACCACAGTCACAAGTAATGCAACGGAACGAGGGTCATC TGGGTCAGAACAGTCAGGAATAAGCCTAGCATCCTCATCAAGTTCTGAAATCATTGGACAAAACGTCATG TTGACTTCACAAAGTCAACTGCATACTCCTATAACTCAAGTAGGTACATCTGTGCCCAACTCGAAATTGA ACGGGGATGCAATCCTCAGGTTTAAAGCGGATACCCCTCCAGAGATAAGATCAGGGGTGTTACCACCGGA GCTAAGTAGGCTTGTGAATGAAGAAGAGCCACGGCATACACTGATCCTGGACCCTGATGAGTTTGAGGAT CCCGAGCAGAAGGAGCTTTGCATGCAGCACAAGATGGCTGTCGAGGATCGCAAACAGGAGCAGAAGATGG CCACCTTGGAGCGGCTTCGCATGGAGGAAATCCTCAACATCTGCGCGGAGTACGAGGAACAGATCAAACA CGAAAAGACAAGCGGAAAACCCAGCGAGAGTGAACTCAGCGACAGCACCATCGAGAGTGGCTCCTCGACG CCAAGGGATGTCCACACGCCCACTTTCCCGCTCGAAGCATTTCCAGCATTCCCGACTAATGTATCAGTAC TTGAAACAAACATGGATGAAGTTGATGCAGCACGTGACGCCATCCCTGCCCAGGTAGTGTCCGAGTCATC CACAGTGTCCGCTTCCTCTACGTTGTCTGTGACGGAGAACGAGCCTCCAAGGGTCTGGTTTGAGAAGCTG AAGGATCCAGACAGCAATGCTCCTGCAGACGTGGTCGCAGGAGCTGTCAAGGTAGAAGAAGCCAGAGCTG TAGAAGCCAAAGCAGAGGAAGCCAAAGCAGAAGTTTCCTCAGCGGTTAAAGCAGCAGCAGAAGACACCAG GAGTGGGGATGAAGGTTCACCACCGCCAAAGCCACCCCGAAGCCGGTCTAGTCTGGATGGCATCGAGGAT ATGAAAGCTGGGGATGAGATGCTGAGTACGGATGAGATATCAGTGGCAATGCAAAAGCTGGAGGAGGCAA GGGTGATGACCATCAAGAAAATAGAACAGCTAGAGATCGACGTTGAAGATTTAGAGATCCAGGAAACCGA AACACTCCAAGAGTTGGAGTTGGAAGCGGCCCTACTGGAGGGGGAACACAGAAGTGAGCTCAGTCAACTT CAAGAGAGGGAGGCCCATTTTAGCACTCTCAAACGCAAGAAGGATAAAATGTCATACGATGCCATAACAA AACGAGAAAGGGAGCGTCTGCGCGTCGAAGAAGCACGGCGGCGCCTCCAGAGCCTGGAGAGGCAGCACTT TGAGTTCAAGCAGAAGATCGAGACCTCGCCGCGGGAGGAGCAAGAGGAGCTCCTGTCCCTGGCCCGGAGA GACTCCATCCAGCTGGACTCGGAGAGGAAGAAGTTTGAGGATCTGGAGTTCAGGCAGCTGGAGATCGAGG CCAAGATAGAGGAGGAGAAGGAGATTCAGGAGAAGAGGCTGTCCCTGGAGGAAGACGAGGAGGAGGAGAA GATGAAGAACTCAAAGGAGACAGTATATGACATCAACAAGCAGATGAATTACATCATCAGCGATGCCAAG AGACAAGCAGAGACCATCGAGAAGAAGAAAGTAGCGGCCATAGGTCACTTAGAAAAGGAGAAGAAGATGT TACTAAGCATTGAGAAGCAGTACAACAACCTAGTCCTCTACTACTCAAGACACATCCTACCAAGCCAGAA AGACACTCCAGAAATGATGAAGATCAAAGACATGGCCGAGCGTCGCTTGAGACTGGCTCCGGAGCTCTCC CTGAGCGACGAGTACCTCGCCAGACGGAAGACCTCAGGAACTTTGACCCCTAACACAGGGGTCAAAGGCG AGGGAGGGTCACCATCGATGTCCCCAGCCTCTTCTAACAATGCTCTGAGCAGGGCGGGTACAACCATCTT GGATATTGAGAGGCATAGGAAGCTAACACTAGAGGAAACAGGTGAGCAAGTGATCGAGAAGGAGAAATCT CGCCTGATGGAGATGCGCAAGAAAGCCGCAGACGAGGTCAAACTCCAGTGGGAGGAGCAACGCAAGCAAC GAGAGCTCCTCAGATCCCCGACCTCCACCACCTCCTCCTCCTCGTCGCCCCACAACTCCATCAGCTCCCC CACGCACCTCGGCTCCCCCTCCCACCTCCCCTACCGTCTGGAGTCCCCCTCCTCGCTGGGGTACAGTGAC TGCACCAGCGTGTCGAGCTTCGAGAGCATCGAGGGGCATTTGGACTTCGGGGGCCGGTCGGGACACAGTA CTCCTTCGCGGACGTTCAGTGGGAGCTTTGTGAATATGTCGAGGGAGGAGAGGGATAAGCTACTCATAAT GGAGAAAGCTCTCAGGGACGCCCAGGTGGAGAAGATGGCGTTACTGGAGCAACAGGAGAGATTAAAACAA GTCGAAGAGAAAGCATTACAAGAGGAGATCATTAGGAGAGAGGAGCTGGAGAAGAAGCTGAAGGAGGAAA CCAACATGAGGGAAGAGCTTGTCGAGGAACAAGTCAAGCTGAGAGAGAAGGCACGCAATGTACAGTCTCG TCCACTCACAAGATACCTGCCCATCACGTCCGAGGACTTTGACCTCCGAGCGCACGTCGAGACCGCAGGT CACAGCGTCGACACCTGCCCCTACATCGCCATCACCAAAAACACCTGCCGCGGCTACGTGACCAAGATGG GCGGCCGCATCAAGACGTGGCGTAAGCGCTGGTTCGTCTTCAGCCGCACGAAGCGCTCCTTCCTCTACTA CTCTTCCGACAAGGACGAGACGAAGCCCAAAGGCGGCATGTACTTTCAGGCAGTTCAGGACGTTTATTTC GACCATCTCAGACCGTACAAGAGTCCCAATCCGACTTTGACGTTTTGCATCAAAACCAAAGAAAGGACTT ACTTCCTTGTTGCGCCATCGCCGGAAAGCATGAGGATATGGATGGACGTTATAGTGACTGGGGCGGAAGG CTATATGCAGTTTAAATCATGAAGTGGATATTATTCATCGAAACAACTGGGAGAAAAGCCTGGTATAGTG AAGGACGACGCAGTGACTGGCACGGAAGGCTATATGCAGTTTAAATCGTGAAGTGGATATTATTCATTGA AAAAACTGGGAGGAATGCCTGGTATACAGAAGGACGTTGCAGTGACTGGCACAGAAGGCTATATTGAGTT TAATTCATGAAGTGAATGTTTTTCATTACAACAACTAGGGGGAAGCCTAGTGAATGGATGGGTATTAGAG TGACTGGTGCAGAAGGCTATATGCAGTTATTTATCGATACAACTGGGAGGAAAGCCTAGTGAACAATCAA ATATACAAGCTGTGTCTTGTTGGATTAAAACAACTGGACCAGAAGACTACTACTTATTGAAACATTATCT TGCAATTTGAACAACAGGAAATGAGGTCCATACCTTTTTGCAAGTTATTGCTGGTTAACATACGATTTGT ACTTGATTTTCAAGTGGAATCAACATCATTCATTTTTATCATATCACAGAGAAATTTGCTATTTATGATA TTTTGATGTATGTTTCCCAGCTTTGATACAATTCATATAAAAGTTTCATGATCACTTTTGACATTCTGAA TATACCAGGATGCAGTCAGTTGTTTGTTCAAAAATTAGCATTTTTTTCTTCAAGATAGTATAAGTTAGAA GTTATTGGTTCTCTTAATAGATTTTTTTTAAATATTGGAGGGCCATCAGGCAGATCACACTAACATTCTC TAACAAGACCTTGAATCTCCACTTGGCACCCTCCACCCAGGTGAAGTAAAATGGGTACCCAGTAGGGGAA CTCCCTTAAATGATCTCACATTATAGAAGCTTGGCTATAGCGAGGGGGAAATAGAATCCAGTGCATTTTT ATTCCATGGAAAAGGAACTTCAAAATAATCATCTACCCACTCTTCACGTTACTGGTATAACCCTAATGCC AGAACTTTTACACGTACGAAACTGAATTTTGTGAATGGTCCACATTTGCAAAGTTTCTTGAGGTAAAATG GTTACTATTACCAATTCACAAAAGTTTGAGGTCTTAAAATGTCCTGGCGTTTCAGTAGTCCTTTAATAAA TGTGCCAGTGTCGTAATGCAACTCAGTTTTAACTTTGGGTGTTAATAGAGAAATGGCTACATTGTAGCAT TTCATCAGCTCTGCATAAATAAACATTCATTGGTTTTTAAAACAGCATACTATACCTTGCGCTGGAAAAA GGGAACTTATTTTTCTCTTTTCAGTCCATTATATTTGTCCACTAATAATTTCACCTTCATCTTTGGATTT TCAAGTATTTTCTCTTGTTTCTATGAAAAGACAAGTTGCCTTAAAAGTTGACACAAAACTGTGTTTTAGT TTTTATACAAAATTGTAACGCACACTAGTTTTATAAAGAGGTTGCACCGTGAGTTGTGAAGGAAATACTG CCATAAGTTATAGTAGCATGTAGCAATACATTTTCTTTTTCTTCTATCAAATTATACTTTGATTATTATA GAACTTGTAAATGTAATTGATTTATAGATCAATTTGTTAGTACTGCATTTGAGGAAAAGGTTTGGGTAGA CGATGCTATTTTTTTCTATCAATCTACACAAATTTCATGCATTCTGGGTGTATTGCCCAAACAAGGGCCC ATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds