Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038191690.1 PREDICTED: Patiria miniata uncharacterized LOC119721637 (LOC119721637), transcript variant X5, mRNA CCCATATCTCAACCGTTGATTCATTCAATGGAGTAGTATTCAACATGGCCGAAAGACTCCGTCGCGACCC CCTCCCCCCTCAGTGGTCTTACGGGGTCAAAGCGGACGGGAGAATCTTCTTCATCAACGAAGAGACCCGT TCAACCACTTGGCTACACCCCGTGACTGGCAAGGCAATCTCGTCTGGCTGGGACGACCGCGTCGATTTAC CGCCAGGATGGCAGGAAGGAATAACAAGGGAAGGTGCGGCATACTTCATGAACCATCACACGGGGGAGAC GACGTTTAATAATCCCATCACCCAACAGCCGGAAGCAGACGATGAGTTCTTCCTCATAGACAGGACACAC GAGACCCCGCCCTACCACCGCCCCAATCTGGCACCCCTCCAAATGCCCCCGAACAACTCCACCCCAGGCC CCGCCCAATCCGACCCCTCCCAATATGACCCCGCCCTCAGCCCATCCTCCCCGGTCTATGCCCAAGCAAC CGTGCCCGACAACCGGACCACGCCCAACCAGCCGACCACACCCACCTCGCCCACCTCAGGGGATCGGCCC AGCTTCCGGAAGCGGGTCGTGCCCAAGACATCGGCGCCCTCGTTGAAGCGGCGGCGGGACGCTGTGACGT CCATGGAAGGGTGGCTCTTCAAGCAGGACAGCGGGGCGCTGAAGGCGTGGCGCAAGCGCTGGTGTGTGCT GGCCGATTACTGCCTGTTCTACTACAAAGGGTCTGATCAAACAAGGTCTGAATCAGGCTCCATATTGCTT CCAAGCTATCAGATCAGTCCCATCGGACCGCAGGACAAAATCAACCGGAAATTTGCATTCAAGTGCGAGC ATGACAATATGAGAACTTACTATTTGGCGGCCGAGACCCAAGTGGACATGAATCAGTGGATCAGAGCATT GAAACTGGCCGCAAATGTACAACTCGACAGGAGTCAACAGTATGGCGAAGACGAAACCGGTGGATTCGGC GACTACCGCTCGCCATCCCAAAACGGCGGCCACAACGGACGAGATGACGAGGAAGAAGATTGGCTGTTCA AGAGCTCCAAGGACCTGAATGGCGCCCTCCCAGACGACTACGAGGACAACCGCGACGCGACGGCCCCGCC ACAGAACGGGTTTGACCCAGACGGGCGCTTGCCGCGCGAGCCTGACGAGGCCGACGGGCGTTACCATAAT GGGAATGATTACGTGGAGGGCGCCCCTGATGGTTACTGGGAAGCAAGGGAGAGGTACATCCAGAATCATG GACACTACCCGGAGGATAACAGGCCCGGACAGGACGAAATGGACCACGCAGTTCCGCCGGCAATATATGA CTACCCTCCAGACGAGGACATCGACGGGTACTCCTCTCCAGAGGAGGTAGTGAAGCGTGACCGTTTCCAT GACGATGATGACGACGACTTAGCCCATCGGTTGCCGCCCGACAGCGAACAAGTCGACAGGGACATGTCCG ACAGAGAGCAGTTTGGATCGGATCGCGGGAGAAACCCAGGCGACCGTCCCGACGACCGGAAACCGCGTCA ACCCCGCGACAACATTCGCGAACCCGAACCCGATCGCGGCGAGAGGGACCGATATGACTCGGACCGATCC CGGGAAGATTACCAAGGGTTGTCGAGTCCCGATGCCGGCGAGTACACCAAACTCCGGTTCTCCCCGCAGC AAGACCGCCGGGTACCGGGTGAACGCGGAGAGGACCGCGAACGCGACCAGTACAACTCCCTCTCGGAGAG CGACCAGGACCGACGTATCGTCCCCGTGGAGGAAAGGCTTGTCAGCGCAGCGGCGCCTGTCCAAGAAGCC GGTTACGACCCTCGGGAGACCTCGGATAGTAGTCATGGGAAGCAAGATTCCAAGTCAGCTTCCCTAGAGG ACGAGAGGGGCACAGCTCGGTCAAGAGATTCCCACTCCAGCCGGGCATCCCAGGACAAACATGGCGGCAG ACACGGTGACAGACAGGGTGGGGAACCCCGCCACAGCTGGGACCGCGGGAGCGAGTCGCTGTCCAGCCGG GACGAGGGCCAGCAGCGCGGCCGGTCCCCGGGAGGGCGAGGCCGGCGGGCAGGGGGAGGGGGTGGCAGGC CGCCTCCCCACTCCCCAGGCCAGTACCCAGAGTCTTACAACACCCTGCCCAGACCCAGGTCCAAGTCCCG GGAACGCAGTAACACAGATGAAGGCCGATTCCCAAATGACAACAGGGGCCAGAACCAAGATGGGTCGTTG GACCGTCGCCAGATGCCACATTACGATTCCTCCACGACCGACTCTTTACCTAGCCCGTCGGGCGACCCCA CTTCCCATCCGCTGGGTGGAGGAGGACGGAGACACCCACATGACGATCCCCGGAGAGTGCACTCGTTGGA TCATCGGCGCCAACGACCACACCGCGATTCCGACTCGCAGTCTGATTCCCGTCCCAGCCCCCGTGACGAA CGTTCACCCCAACCTCGGTCCTACCGGGACCTGGAGGGGCGCGTACACAACCCACGGGATATGCACGGCA CAAGGTCGCTGGATCGCAACCAGAGGCCGCCCCACCGGTCCTCCATGGATTCACCGCCGAGGGCGTCCCA GCAAAGTGCCACCCTCCCTCACGATTACCGAAGTGCGGACGCCCGACGCCGCGACTACGCTGGGGCCCAA GACCAGCCTGACGCGGACATCTCCAAGATGTCAACTCCGACCAGCTCAGCCCCTGGCTCTGTAGACGGAA GGGGTAGAAGGGATCCAGAGACTGGAAGCCTGAGACGAGAGGACCCTAGAGGGGACCCCAGAAGAAGTGA TCCAAGAGGTGACCCCAGGCGAGGTGATCCACAGAGCGATCCCCGGCATAACAGAAGGAGGGATCCCCGA GGTGACCCAAGACATCGGGACCCTGGAAGAGATGAGAGATTTGACCCAAGAAGAAGCGATCCGAGAATGG GTGACTCAAGGAGAGGAGACCCCAGGCAGGGCGATCCTCGAAAAGGCGACCCCAGAGAACGTGACCCAAG AGATGATCCCAGAGGTGAGCCAAGGAGAGGTGACCCCAGAGATGACCAAAGGGGACGCGACCCTAGAGAT GATCCAAGGCAACGTGACCCCAGAGGTGACCCAAGGCAACGTGACCCCAGAGGTGACCCAAGGCAACGTG ACCCTAGGAGAGGTGACCCACGAGATGATCCTAGGAGAGGCGATCCTAGACATGACCCGAGGAGAGGTGA CCCCAGAGGTGACCCAAGGCAACATGACCCCAGAGGCGACCCAAGGCAACGCGACCCCAGAGGCGACCCA AGGCAACGCGACCCCAGAGGCGACCCAAGGAGAAGCGACCCCAGAGGCGACCCAAGGCAGAGTGACCCCA GGCAGAGTGACCCAAGGGGTGACCCCAGAAGGAGTGACCCTCACAGGGGCGGGCCTAGGGACGACAGGAG GAGGGAGATGGAGGCAGTGCAGGGACGACGTCCGCCAGAGCCTCTGCATTTCAAGTTTCCCAAGACGGGG GAGATGTATCCTGGTGAAGTCACCCCGGAGCAGCGCTCCTTCCTGCAGAGTCCGTTGGCTCAGCCAAACC AGGAGCTCCTCACCCCCGAGCAGCGAGCAGATATCAACAGTCCTATGGTCTACCAGCGTAAGGAGGCAGA TTGGCCCACCAGCCGACCTGAGGCCTACTACAAGGCCAAGGAAAGACAAGCCGAAAGCGCGGAGCACCAG CCACATGCGGACTACATCCCGCAGCCGGTAGAGGCCGTCATTCAGCGCTCCACCCCCACCAATGCTACCT TTGCCTCCGCCCCTCCCCTGGAATCTCAGGACAGGTACCCCGAGGAGCAGAAGAGAACGTCAAACTACGA TCGGCCCAGGAGGTTCGCCTCGCCGATCACTGAGGAGGAAGTCGAAGGAACCACTGAGCCAGACATCGCC CCGAGACGAGCGAGGAACGCCGGCCACAAGCGCCGCTCGGACAGGAACACCTTGGAGAGGAACGAGTTTG ACACCGGGGATCAGCTGGCGCCCCTCACTGAAGGGAGTGGAATGAGCAAGGGGCCGAGGGAGCCAACAAG TCGATTCAAGAAGTGGCAGATGAAGGCCCAGCCTTACATCCTCCTGTCCACCGGGATCCGCCTGCGCCTC AGCATTGCTGCCGGAGACCTCCTTGGCAAATCGCACGAGGAGCTAGTGCTATTGCTGATCCAGCTGCGCA GGGACCAGTCCAACCTGGAGCGCTGGCTGGAGATGATTGACCAAGAGATGGCGCTGTTGATGGACCCCAC CAGCTCGCCGCCGGGCAGTCCGAGTCGCATCAGAGCCAGACATGGTGACTCCCTCCACCGTCGCTCCAAC CCCAACCTGAGCGAGGACCGCGAGTTCTTCGGGGAGCTGTCGCTTGAGCGCGAGGAAGTCGCTCGTGAGT TGGAGATCAGTCGCCCTTTAGTTCACCTGGTGGACAACCTGGTGCGCATGGGCAGCCTGTACGGCGGCGA GAACCAGATGATTGCGCAGGAGTTCTACAGGGACAAGGTTCAGAAGGATCTGAACTACATCCAGCCGAAG AAACTGATCGAGTTCTCCCGACGACTGGAAGAAGAGAAACTGGAGAGAGACCTGAAGGGAGAGCTGGAGC AGATACAGACGGCTGAAGATAGACTACTAGAGGACAAACTGAACCATCTCCACAAGCTGGACAAGAAACT TCAGGAATTGTCGGCCCAAGTCTCCCTCCTCAAGGAGGACAAGGACAAGATAGAAACCTCCCTGGACCGG CTAGGACGGGAGATGGAACGACACTGGGACGACGGGCCTGAGATCCTGGGGGGAATGGAGGACCAGCAAC GCAGGCTGGAACGGGACCTGGTGAAGGTCCGGACCCAGCTGGCTTATGGGACAAAGGAACTTGAGGAGAT TGCAGCCGAGAACGGGAAGATTGAGTACGAGGTGACGCTGCTCAGATCCAAACTCGATGGTCGTCACCAC AGAAACGCCAAGAGTCCACACGAGGGCGCTACAACCAAGGAGCGGCTTCAGATGGAGAACGAGGTGACCA GGGTGCAGTCCCTGCTGGACAGTCTGGGCAAACAGAGGAACCTACTGGTCAACCAGATGCAGACGCTCAG GACCGGACCAACGGAAGCTAACCGTGAGAAGTTCCCGCGTCGCCGTCACGAGCACTCACCCCGCACCCCC AAGCAGTACACCGTCACTGACCTGGATACCATGGTGTCACGTGACCTCAGCGCATCATCGCCTGCTCCCA TGGCAACGGCCAACGAGGGCATCTCCAAGTCGGCGCCACCACTGCGGCGGAGGGGGGACAGCATCAAGAA AGTCCGGCAAATCAAAGAGCAGCAAGTTCAACAATCCCCGGTCCTGGAATCCGTGGCCTCCTCCACGGCC CAGTCCTCCTACCACGCCTCCCCTCAGATCCTCCATCCCCAGCCCCGCTACCAGCAACTCCCTGCCAGAC AAGTGGAGCCGCCCCGGCTATCCCCCGATTGGGAGAATCAGTACTACTCGGGCCCTTCCACTGACCGCAG GAGGGGTGATGCGTCGCCACAGGAGAGGGTACGCAGTGGACCGACCCAATCTGGTTGGCATGACGAAGGT CACCGGGTCGACAAGAGACAGACATTCGGAGGCTATGGGAAAAGGAGTAAGGGGCCTAGGCCCGACTCCA AATACCACACTATCAGTCGTACTGGGGATGTCGTCCACCATTCCCCGATGCGGAGAACCAGGTCAGTGCC CGACCGCGAGGGACTAATGGCAGACGACGGGAAATCTTCAGCAATGGGTGCCCAAGACGATATTGCCATA CACGAACTGCAGAAAGCTCTGATAGACCCGGACGAGTTCAACGAACTTGTCATCCCTGAGCCGTCGGGTC CCCGCCCCTCGGACATTGTCAGTGGCAAGTACAAACCCATCGATGTGGACGAATCAACGGGCGGTGGACT TCTTGGGATGCCAGCCAAGATTGTCATCCCCGAACGCTACTTGCCTGATGAGGAGGACGAGGAGGAGCCA ACCATGACGGCTGAGGAAAGAGAGAAACATGAGGAGAGGGTGGATCGCATCACCAAGATGCTGTCAGCAC ACAGTCTTCAAGAGTGGAGTCCCAGCGAGATCCTATCCACGTGGGACCAGGCGGGGGGCTTCCCAGAAGC AGAGCAATTGAGGCAGAAAGTGGAAGAGGAGAAACAAGCTCGGCAGGAAGTGCTGACCATGAGACGAGCC TTAGCCCAGGAGGTCAAAGAGCAGAGCAAGGTCATGGCAGCTCGAAGCATGCGGATGACCACTGAGACTC AACAACTGGCAGCGAGATGATGTTGTTGATGCCACGGTTACCATGCCAACACCACCAGTTCGTCGTCAAG GCAACTCGGATCTCATACAAAATCTCAACTGTCAAAGCTTGTGTTAAGGAGACGCACCGTTCCCGTCTGT GAACGTCTCACTCCACAAGCAGAAAGTTTGAGGAATTCCTAAATTACTTTGTCAATGGGATAAAACCTTT GGAGTTGAATCAAATAGGTCTTGATCGAATCACCATTTTGTATCCAAACTGAATCCACACCCAACTTGAA CTTTGCATGGGGCCTGGGCCCGATTTTCTTGGCTCTGCTAACCACAGAATTCTGCGCTTACTACATGTAT CTCCCTTTTTGCTTAAAGCGCTAGCAGAAAACTACTGTGCTAAGCCTGGAAGCACAAAATCCTTAGCTAC GGGATGTACGCATGCGTACAAGCCAACATGCCTCGCAAACCAGCAAAATATGTTAACCATAAGCACAGAA TTCTTTACTACAGTAAGCAGGGATTTTTTTTGCTATTGGTAAGCAGAACCGTGATATTGGGCCCCGATGT CTAAATATTGTTTGACAAAGAATGTACCATTGTTATGTAAGCAGACGGCGTTCTTGCAAACAAATACTAA AAAGAGAGTTTGGGGATTTTTTTTTTTTTTGAAATCCATAATTTGAGGGCATTGACAATGACACCACTTC TTTTAGATTCGTTTGTATTTTGTATTCACATTTGCATTTTAATTCGTTGTTATTACCTGTATGCATACAA AAAAAATTGCAAATAAGAAATGTATAGATTTGTTTACCGATTGTATTTTCTAGTTTTTAAAATCTTTAAG CTGTATTTTGAATTTTTCGATCGCTTGATTTGTTTAGATTCGAAATCTGTTGCATTAACATTAATATTGT TACTACTACTGAAATCTGTAGCGATTAGTTTTTACATAGAGTTGGTGTCGCAGTTTGTCTAGGAAATTTT ACTAAAGTTTGAAAGACTATTTTTTAAGTGTAAATTGCGATATTTTTAGTTCTTTTTTTCATATGATTTG ACGGAATATTTGACATCACTTGTTAATTTTACCTTTTTTTAGAAGTTGCAAATGTTTTAGTAGTCTGTTG GCTGTTAACACAGACTTTTGTTTTGTTATTCACTGCCAGACAAAAAAATGTTCTCAATTCTCGGGAAGAT TTTGGAAGTTGAGCTGTTTTCCCAGTTCTGTTGAAATTGTTTAAAATGTTTGTTGAAGAACCAGGTTGAC AGAACAGTATGCATGCGTGCACTTTATGTAAATTCATTTGCTTAACCAATCATTTTACCTCTATCATTTG TACAAAAAATAAAAGTATAATTCATCGATGCCGATTGGTCAAATGCAAAATGTTAAGTCACTGATTTATT CATAATATGCGAATATTTAAATGATTATACTGCTTTCTTCATAAACTTTGCACATGCTCCAAGCGAAGCA AACTTTTGCCACCAAACTTCATTTTCAATTTTGTTGTCACAGTTTTTTTTTTATTATTCTAAGTTTTGTC ACATTGGTATTTTTTAAAATGGAAAACATATTTTCATTAATTCCAGTGAAATTTTCAAAATTATTTCCAA CAGTACAGCACTAATTGCATGAAAGTGCACTTCCGTTGTATATTATTTGAAAAAAAAAATTCATTTACAA GTACTAAGTGCAGACAATATTTTGTAGAATATTATATTTTACTTTGCTACTTTTGTTAATGTGTATATAG ACAGTTCATTTTACAGTTTGGTATTTTGGGCCAATTAATTTGTGTTAATTTAGAAAATAACAAATATATT TTACCTCACGTACTTCGCTCATAATGTACTTGCCATTAAAAATGGTTTGAAGGTTTGCTGTGGATTTGGT GAGTAGAGTACTAAAAATTTTCAGATTCAGATCAAATTTTAAAATGGGCTGGGTTTATTTCTTTTTCTTT TAAATTTGAAATACTAACAGAGTAATTTTATGTTGTGTATTCTTTTTTTGGAGAAGGGGTCTGATTGCCA GAACGGGGAAGGCATGCATTTAAAAACAGTTTGAACGAAGCAGACTGGTTTAAAATGGCAGGTTTTTTTT TTTTCAAGATGGCCGCCAAGTTGAACCATTCTACGCAGCAGCTTCATTTAATCATACTGATTCATTAGGC CCCATATCTGGTTTGTTAATGTAATGGCTAAGGGGCGTGGCTAACTCGCCCACGACGATTGGTCAATTAT TCAACCCTTTGCTTATGCGCCATGACTTAAAAAAGCAACTTCAGGTAATTTAGTCTTGATTGATTGCCTT TGGAGAAGAAAAAAATGAATTTAACATTGTAATACTTTGCCTTACTGTAGAACATCGTGTGGTGTTTATA CATTGCTTAAGAATGTAAATGTTGTCTGTGAAAAATCATACAAAGAAACTTAAAAAAACGAAAACTAAAA ACCCAGTTTTTTTTAAAGGTATATTTTGCAAAGTAGTATTCAAACTGTAACAATGAAATGAAAACATGCA CTCCCAAAGCAAAATAACTATGTTGGACAATTTGTGACTAAACAATCCGATAATATAGTTTTAAGTTTAT ACTTTTCTTAGTGACAGACAGTTAAATGTATGCAGATCTTTCTGTCATTGATTTGTTTTCCATCATAATT TGTTTTTAACAGTACACTCGAGTACTAGAAAGAGTAATAAAATCTGAGGTGTTTTGTAGAAGAAGAAAAA AGTGACATTGTAAATATAACTCTTTAGGTGCTTCCAGGTAACACAAATATTTTGATATAGAACAGAAATA TTAAAATGCTGTGGTTATTTTAGAGAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds