Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198913.1 PREDICTED: Patiria miniata copper-transporting ATPase 2-like (LOC119727027), transcript variant X2, mRNA TTTGTAATTTGGAAAGATTTGAGGATTAGTAAAAGGGAACACGTTGAATTTGGAAGTTTATTTTTCAATA TGTTTTGAAACCATGAACATTTTCTCGGAACGCGATGACTACGTCATGCGCCACGCGTCATTTTTACAAC CGGATCCGTCAAAAAATCTAAATTCTCGTGTCGTCGTGATGCCTTTTGACTGAGTGAACCAAATAGATTT AGAAAAAAAAGACAAAGTACTACAGCATGGAGGGGGCTGATAAGCCAGAAACTAGTACAGCCGTGGAAGA GAACAAGCAACAAGTCGAGATGACAGATGCTACTGCTGTAGACAAAGACAATATGCAAGGAATCGTCCAT ACAACAAGTCCGCCAGAGGAAATCAAAATCAAGGTCCATGGAATGACCTGTGAGAATTGCACCGGGTCCA TCGAAGCCAACTTAGCCAAAGTCAAGGGGGTCGACAAGGTGTTTGTTTCCCTCCCAAAGGAAATGGCTGC CATCCACTTCTATCCTGAGGAAGTCAGCCCGCTGGAGTTGCGGGAAGCCATCGATGACATGGGATATGAG GCCGAATTACAAGGACGGGATACGTGTTTAGGACGGGAGGAGGATGTACGTCATACGAGGATGGAGGCTG AAGCAACTGAACTAGAATGTCTTTTGTCAGACATCGATGAACTTGTGTCGAGCAAGCAAGACGAAGGAAC TTCTGAGGACACAAAAGGAGCTTCTGATCCTACGTCTATCGAGATGGTGAGGTTTTCAAGCAGAAATGGT ACGAAGGAGGAGCAGGCGTCTCTCAGAGTCACAGGCCAGACCAAATACCAGGCGCTGAGCAGCCGAAGCG TGGAGGAGAAATGCGTGCTGCGGGTGACGGGAATGACCTGCGCGTCGTGCGTGGCTACCATAGAGAAGAC GCTGCTCAAACATCGAGGAATCAGTGCAGCCCTGGTTGCTCTCATGGCCCAGAAGGCTGAGGTGACCTAT GACCCAGATGTCGTGACCCCAGAGGAAATACGAGAGATGATCGATGACATGGGCTTTGACGCCGAAGTCC TTGAGGAAAAGAACCAGGGTGGAATTGAAACACTGAAATTAACGATTTCCGGCATGCACTGTGCATCATG TGTGAAGAACATAGAATCACTGGTAATGCGCATCAAGGGAGTGACGCATGCATCGGTGGCGCTCGCAACG TGTCGCGGGGAATTCAAGTACAAATCTGACGATGCAGGACCCAGGGCCATCATCAAAGCTATTGAGGAAG CTGGTTTTGAGTGCAAACTGGCAACAGACGAATCGCACGCCTCTACCGCCCTCCAGCAGCTGAAGACGGT CAAGAAATGGCGCGGCTCTTTCCTCGTCTCGCTCATCTTCGGTCTGCCCGTCATGGCAACCATGATCTTC TTCATGATCAAGGAGAACCACAAGTACAACATCATCCTGTTGCCAGGGCTCTCCTTGGAGAACCTCATCT ACTTTGTCTTATCCTCGATAGTTCAATTTGTTGGAGGCCGATACTTCTACGTCCAGGCCTACCGGGCCTT GCGTCACAAGACCGCCAACATGGATGTCCTGATCGTCATGGCAACCCTGATTGCCTACTTGTACTCGGTG GTGGTGGTGGCTTGGGCCATGATCAAGAAGGATGAGGGCAGCCCGGTCACGTTCTTTGAGACTCCGCCCA TGTTGCTGATGTTCATCAACTTGGGCAGATGGTTGGAGAGTATTGCCAAAATGAAGACATCAGATGCCCT CTCCAAACTGATGTCCCTCCAGCCGTCGGAAGCCAACCTGGTCACTGTGGGTGAGGACATGGAAGTGACC AGCGAGCGCTCCATCAGCGTGGAGCTCGTGGAGAGAGGAGACATTCTGAAGGTGGTGCCCGGGGGGAAGA TTCCGGTGGATGGGAAAGTAATCGACGGCTTGTCAGCCGCAGACGAATCGCTGATCACGGGGGAGTCCAT GCCTGTGTACAAGAAACCAGGTAGCATTATGATTGGTGGGTCCATCAATCAAACTGGCACCATCCTCATG GAAGCGACGCACGTCGGCGCCGACACGACCCTGGCACAGATTGTCAAGCTGGTTGAAGATGCGCAAACCT CTAAGGCTCCAATCCAGCAGATAGCTGACAAGATAGCTGGTGTGTTTGTCCCCGGTATCCTTGTACTGTC AACTCTGACGCTGGCCATCTGGATTGCTATTGGAATGACGCACCCAGAGCTGATCCCCACATACGTGTCC ACACCATTTGCTGCTAATCATACCATGGAGCTGACCATTGAGTTCTCCTTTCAAGTGGCCATCTCTGTCC TGGCCATAGCCTGCCCCTGTGCCCTGGGCCTTGCCACCCCCACGGCCGTAATGGTTGGCACCGGGATGGG GGCCCGCAGCGGCATCTTGATCAAGGGAGGGGAGCCCCTTGAACTCGCTCGCAGGCTGAAGACCATAATT TTCGATAAGACGGGCACGATAACCTACGGCGTCCCTCGTGTCATGCGTACCAAGGTCCTCGTACCTACCA CGGAGATTAGCGAGGAGGAGTTCTTAGCGATAGTGGGTACAGCCGAGGCGAGCAGTGAGCATCCACTGGG GGCTGCTGTGACCAGACATGCCAAGGAGATGCTGGAGTCAGAGGTGGTGGGCAAGTGCTCCAATTTCAGT GCTGAGCCTGGCTACGGCCTCCAGTGCACGGTCACTAAGATCAACGCCATGCTGAATGCAGGCATGAATG AACAGAATGCGAAAATCAGCTCTGACGTAATCATCGCACCAACTGAAGTCACTGACCCTGAGGAGATAAC TAAAGAAGAGGATTCCAGCATCTATGAGGTACTCATCGGCAACAGGGAATGGATGAAGAAGAACAACCTG GAAGTTACTGATGAGGCAGATCACACCATGGCGCAGTATGAAGCACTGGGACAAACAGCCGTCCTTGTTG CCATCAATGGTGTTGTAGCGGGGATGATCACCATTGCCGACGCAGTCAAGGAAGAGGCCAAGCTTGCAGT GAAAGTCCTGAAGGACATGGGGCTGGACGTTGTGCTGCTGACAGGCGATAACAAGAAGACTGCGGATGCT ATTGCCAAACAGGTTGGCATCACCAAGGTCTTTGCCCAAGTCCTGCCCAGGAACAAAGTGGAGAAGGTGG AAGAGCTCCAGCAGCTTGGGCACAAGGTTGCAATGGTGGGGGACGGGGTGAACGACTCGCCGGCCCTGGT CAAGGCTGATGTGGGTATCGCCATAGGAACGGGCACGGACGTTGCTATGGAGGCTGGGGATATTGTGCTT ATCAAGAATAATCTGTTGGATGTGGCAACTGCCATTGACTTGTCCAAGCGCACCGTTCGCCGAATCCACA TCAATTTCTTCTTTGCCATTATCTACAATGCTCTGGGCATCCCCATCGCTGCTGGTGTACTGTCGCCCGT TGGCATATTCCTGAGACCCTGGATGGCCTCTGCTGCCATGGCGATGTCCTCCGTCTCCGTGGTGCTGTCG TCTCTCTTCCTGAAGTTTTACAAGAAGCCAACATACACTGCAAAGAAAGTGGAAGAAAGAGACAATATGC TTGAGAGCGTCTAAAGCCGTGGAACTGAATTGACAAGGTACCCATTTACTCCTGGGTGGAGAGAAGCAGT TAGTGACAAAGTGCCTTGCCCAAGGGCACACGCACCACAGCCAAGCTGGACTCGAACCCACAACCTGCAG AATTGCCCGCAGACCATGAACTCAATGCCCCAGACCACGAGGCCATGGCACTCCACAAAAAGTTTGGGTT TGTCTCAGTTTCACAATCTGCCATTTTCTAGTTGTATTTAAACCTAAAAGATCTGCATGCTGTATAAAGA GTAAACAAATATATAAAGTGGCCATTTTGAATCGTATGTTGTTATTCATGTATACTCTTGAGAAACAGTC ATATTAATTTCAAAGGAACTCAACTTGCATTTGATGTATCGTCACTATAGGAATTATCTCTTTTAACTTT AAGTCATGTGGCTGTCATGCACAAAACATTTCATATTTTGTTCTATTTTTGTATTTTCTTTATATTTAGT TTGTATAGAGTTGCTGAAACGTCACTAAAAAGACCTTCAAATGTGATACACTGAATGAAATATTTTGTGT AATTCAATCGATTATTGTGATTTCATTTATCTAATAGTGTATAAAATATATCAAACCTTCATTAAATGTA TGAAATAAATGTTGAATGTGTATAAAATATATACAACCTGCATTAAATGTATTAAATAAATATTGAATTT ATATAGAAACGAATTTTAGAGACAATCAATATGCCCCTCTATCCAGCTATTTATGCTTTTTCACATTCAG TTTTGAAATGATTATTTCCATTAGTTATGTATAGGCCTAAATATAATATATCGCAAGATGCAATGTTCTC AGTAAAAACAAACAAAAGAAGATACAAGTGTAACTTCCAAATGAGAGCATTGAAGGACTGTGACCAAACA AGTTCACATTGTGCAGTTCACTATTTGTGTACCTAGTGCAGTGCCCATTCAAAACATGACTGTTTGGAAC AGGCAAATTGCTTGGCCTTCGGTAGACCCGCAAACGTGGCAGTATCAAGAGTGCAGTGCCCGTATAACAG CGCGCCATATCTACGCCTCACCGTTGCGTGATCGTGCCCTTCATAAAGTGGTCGAGGCCCACCTCATCGT AATGTGATCATCCCCTTCAAAAATGGTCAAAGCCCACCTCACCGTTGCGTGATCGTCCCCTTCAAAAAAT GGTTGAGGCCTACCTCACCATTGCGCGATCATCCCCTTCAAAAAATGGGCGAGGCCCACCTCACCATTGC GCGATCGTCCCCTTCAAAAATGGTTGAGGCCCACCTCACCGTTCTGCGATCGTCCCCTGCAAAAAATGGG CGAGGCCCACCTCACCGTTGCGCGATCGTCCCCTTCAAAAAATGGTTGAGGCCCACCTCACCGTTCTGCG ATCTTCCCCTGCAAAAAATGGGCGACGCCCACCTCACCGTTGCGCGATCGTCCCCTTCAAAAAATGGTTG AGGCCCACCTCACCGTTCTGCGATCGTCCCCTGCAAAAAATGGGCGAGGCCCACCTCACCATTGCGCGAT CGTCCCCTTCAAAAAATGGTTGAGGCCCACCTCACCGTTCTGCGATCGTCCCCTGCAAAAAATGGGCGAG GCCAACCTCACCATTGCGAGATCGTGCCCTTCAAAAAATAGTCGAGCCCATACAGCCAACCACCATTTGC ACGTATGTTAACCTGTTCCCTTGGTGCGGTATAGAGTGCATGTGTTCTTTCAAAATGTGCAGCAGTGCGT GGCGCAGTGTATATATGCACGATCTGATACACCGTGGCCTCTGGAGACATGTGTACAATAGGGAACAAAA GATTGTATACGTCCCCACAGGGCAATTTCTATAGGTGAATACGTCTCTGGCTGAATTAAATATGTGATAG CTTGTATATTGCTATAAAGTATTGCAAAATTTGTCACGGCATTTGCATGATGTAAAATATGCAGTGTTTA ATTACCATGAAAATGTACATTAAACATAAAACAGAATTTCAACTTTTAAACTATTGCTGCTAAATCATAT TTCATTACAACTGTACCGAGACAGTGACACGCATGTAAACTGTATTCCTTCTATTTTATGTATGTATAAT AATGAGTCCGTGCCAACTTTAATCTTAGCGGCAGGAAATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds