Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030993902.1 PREDICTED: Strongylocentrotus purpuratus serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like (LOC100889142), mRNA ATGGACAAGAGGATTTCCAAACAGTCGGTCAGTCGTAAAAGCAACACCAAAAGTCCGATCCACAGAGACA GTAAGAAGGGAAATGAACAAGATGGCAGTGTTGATGATTTGCAGAGTGCATTAAGCAGTGCTGTGCAAAA TGGACAACTTGACCTCATCCAAGAACTGATCGGTAGAGGAGCCGAGGTGAATAAAGTTGATAATAACGGT TTTACTGCATTACAGCGAGCTTCAGAGGAACTAATCAGTCAATGTGCTGAAGTGAGTAAAGTTGATAAGG AGGGTTGGACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACCAAATGTCTGATTAGTCA GGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAGCTGCATATAAAGGCCAT CTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATGATAAGAAGGGTTGGACCC CATTACTTTCAGCTGCATCTAATGGTCATCTAGATGTCACCAAATGTCTGATTAGTCAGGGAGCTGCAGT AAATGAGAGTAGCAATAATGGTAGGACCACCGAATGTCTGATTAGTCAAGGAGCTGAAGTGAGTAAAGAT GATAAGGAGGGTTGCACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACCAAATGTCTGA TTAGTGAGGGAGCTGCAGTAAATGAGAGGAGCAATAATGGTAGGACCCCATTACAACTAGATGCACAGAC TGCATCTAATGGTCATCTAGATGTCACCAAATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAGCAGC AATGATGGTAGGACCCCATTACACGTTGCTGCACAGAGTGGTCATCTCGATGTCACCAAATATCTGATGA GTCAAGGAGCTGAAGTAAATAAAGATGATAATGAGGGTCGGACCCCATTAAAACTAGCTGCACAGAGTGG TCATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGACGTGAGTAAAAATGATAAGAAGGGTAGG ACCCCATTACTTTCAGCTGCATCTAATGGTCATTTAGATGTCACCAAATGTCTGATTAGTCAGGGAGCTG CAGTAAATGAGAGCAGCAATGATGCTGCATCTAATGGTCATCTAGATGTCACCAAATGTCTGATTAGTCC GGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTCCACGTTGCTGCACAGAGTGGTCAT CTTGATGTCACCAAATATCTGATGTGTCAAGGAGCTGAAGTGAATAAAGATGATAATGAGGGTCGGACCC CATTAAAACTAGCTGCACAGAGTGGTCATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGT GAGTAAAAATGATAAGGAGGGTTGGACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACC AAATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAG CTGCATCTAAAGGCCATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATGA TAAGAAGGGTCGGACCCCATTAAAACTAGCTGCACAGAGTGGTCATCTTGATGTCATCAAATATCTCATC AGTCAAGGAGCTGAAGTGAGTAAAGATGATAAGGAGGGTTGGACCCCATTACTTTCAGCTGCATCTAATG GTCATCTTGATGTCACCAAATGTCTGATTAGTCAAGGGGCTGAAGTGAGTAAAGATGATAAGGAGGGTTG CACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACCAAATGTCTGATTAGTGAGGGAGCT GCAGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAGCTGCATCTAATGGCC ATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATAATAAGAAGGGTTGGAC CCCATTACTTTCAGCTGCATCTAATGGTCATCTAGATGTCACCAAATATCTGATTAGTCCGGGAGCTGCA GTAAATGAGAGCAGCAATGATGGTAGGACCCCATTCCACGTTGCTGCACAGAGTGGTCATCTTGATGTCA CCAAATATCTGATGAGTCAAGGAGCTGAAGTGAATAAAGATGATAATGAGGCTGCATCTAATGGTCATCT TGTTGTCACCAAATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCA TTACGACTAGCTGCATCTAAAGGCCATCTTGATATCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGA GTAAAGATGATAAGGAGGGTTGGACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACCAA ATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAGCT GCATCTAAAGGCCATATTGATGTCATCAACTATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATGATA AGAAGGGTCGGACCCCATTACTTTCAGCTGCATCTAATGGTTATCTTGTTGTCACCAAATGTCTGATTAG TCAGGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAGCTGCATCTAAAGGC CATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAAATGATGAGGAGGGTTGGA CCCCATTACTTTCAGCTGCATCTAATGGTCATCTTGTTGTCACCAAATGTCTGATTAGTCAGGGAGCTGC AGTAAATGAGAGCAGCAATGATGGTAGGACCCCATTACGACTAGCTGCATCTAAAGGCCATCTTGATGTC ATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATGATAAGAAGGGTTGGACCCCATTACTTT CAGCTGCATCTAATGGTCATCTAGATGTCACCAAATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAG CAGCAATGATGGTAGGACCCCATTACACGTTGCTGCACAGAGTGGTCATCTTGATGTCACCAAATATCTG ATGAGTCAAGGAGCTGAAGTGAATAAAGATGATAATGAGGGTCGGACCCCATTACAACTAGCTGCACAGA GTGGTCATCTTGATGTCATCAAATATCTCATCAGTCAAGGAGCTGAAGTGAGTAAAGATGATAAGGAGGG TTGGACCTCATTACTTTCAGCTGCATCTAATGGTCATCTTGATGTCACCAAATGTCTGATTAGTCAAGGA TCTGAAGTGAGTAAAGATGATAAGGAGGGTTGCACCCCATTACTTTCAGCTGCATCTAATGGTCATCTTG ATGTTACCAAATGTCTGATTAGTCCGGGAGCTGCAGTAAATGAGAGTAGCAATAATGCTGCATCTAATGG TCATCTAGATGTCACCAAATGTCTGATTAGTCAGGGAGCTGCAGTAAATGAGAGCAGCAATGATGGTAGG ACCCCATTACACGTTGCTGCACAGAGTGGTCATCTTGATGTCACCAAATATCTGATTAGTCAAGAAGCTG AAGTGAATAAAGATGATAATGATGGTTGGACCCCATTACATTCAGCTGCACAGAATTGTCATTTTGATGT CACCAAATATCTGATAAGTCAAGAAGCTGAAGTGAATAAAGATGATAATGATGGTAGGACCCCATTACAT TCAGCTGCACAGAATGGTCATCTTGATGTGACCAAATATCTAATCAGTCAATGTGCTGACTTTAAAAAGA CCGATCATGATGGCTGGACTGCATTACATTCAGCTGCTGCTGAAGGACATCTTGATGTTGCCACAGAATT AATCAGTCAAGGAGCTGATGTTGATAAGGCTAGTAACAAAGGATGGTCAGCCTTATACCTTGCCGCAGCT GCTGGTCACGTACGTGTTTCAAGTGCTTTGCTTAGTCAGCAAGCTGAGCTTGCCAAAGAAAATATAATTC ATTGGACGGAGTTTCATACCGCTGCAGAGAGGGGCGATCTTGATGCCATGAAAGATCAAGTCAGTCAAGG AGCCGAGCTGAATAAAGCTGGTTCTTTTGGTTGGACAGCCTTACAACTTGCAGCAAGTAACGGACACCTT GATATGATCAAATATTTGCTAAGTCAAGGAGCTGATGTGAATCCTAGCAATGACTTTGGTAGGTGTGCCT TGTATAATGCCTCAAAGAAAGGGAACTTGGATGTCGTGGAATATCTGATCGGTGAAGGGGCCGATATGAA TAAAAGAGATGACCTTGGATTGACTTCCCTTCATTTTGCATCACTTTTTGGCCATTTAGATATCGTCAAA TCCCTAATCAGTCATGGAGTGGAGGCAGATATTGGCAGCGCAGTTGGAACCACTGCTCTCCATTATGCTT TATGTAATCGTCAGATCGACATTACCAAGTATCTGCTCAGCCAAGGCTGTAAACTGAATAAGAGAAGCGT GTGGCACTCTGTTATCTTTCAATTTGATGGACAGTATGGTCACTATGATGGTGTGCGATGTGTGCATAGT CGTGTAGTTCAATCAGTTAGCAGACTAATAGATTCTCTCACTGTCTTTAGAGGTGCTACAGAAAGTGATC TTGGTAGAATCAAATATCAAGAAGGCGATGAGAAAAAGACAGTTCAAGGTGGAATGGTTATTGTGCATCG GCCAAGTATATTGTCTGATCTTGACATTCAAGATCTTCTTGCAAGTCAAGGAGGCAGAACAGTTAGTCGC ACATCATTACAATATGCTGTAGAAGGTGGCAGTTTAGCAGTTGTTCGGTATCTGGTCAGTCAAGGAGCTG AAGTGAACGAAAGCAACAATGCTGGCTGGACTGCCCTTCATTTAGCTGCGCAAATGGGTCATCTTGGTAT TGTAGATTATCTACTTGAACAAGGAGCTGAAGTAGCTAATGGGGATGTTGATGGTATCTCTCCTTTGCAT GTTGCTGCATTCATTGGCCGTTGCGGCGTTATCGAGCATTTGCTTAGGCGAGGAGCAGAGGTCAACGGAG CCACCAAGGAGAAAGGTTCTACAGCCCTACATGTGGGCGTGCAGAATGGTCATCTCGATATCACGAAAGG CTTGCTCAACCACGGATCCGAAATTGATGCGACAGACAATGACGGTTGGACTCCCTTGCACATTGCTGCT CAGAACGGTCACATCGATGTCATGAAGTGTCTACTTCAGCAACATGCTGATGTTACCAGGGTTACCAAGA AGGGATCATCTGCATTGCATTTTTCTGCTGCAAATGGACATACCGATATCACACGATATCTATTGGAGCA CGGAGCTGAAGTCAATCTGAGTAAACCTGGGAAGACTGCGTTGCAACCCGCAGCAGAGGGTTTAACAGAA GATGAGAAGAAGGTTGTTGGACAACATACTGAGAAAGGCTGCACACCAGTTCATTTAGCCACGCAAAATG GCTACACAGCCATCATCGAGACATTAGTTTCTCATGGCGCCGATCTCAACATCCAGTCCATAGACGGACA GACCTGTCTTCACGAAGCCGTCATACTTTCTGGTCGGAAGAACAGCAGGGTTGAAGCAACACCAGCACTC CAAAAGATCTCAGAAGAGTTCTATCAGAATGAATTATCTCCCAAGAAGGCCCTGGTCTTCTATCTCTTGG AGCATGGAGCAAAGCCGGACATCAAGGATAACCAAGGCAACCTACCAGTCCACTATGCCAAGGATGAAAT CATTCGCCAGATGATATTCTCAAGGTCTCCTGCCATGGACATCATCAGAGCTTATCGAGGTAACACTTTC TGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
