Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041617924.1 PREDICTED: Lytechinus variegatus speract receptor-like (LOC121422745), transcript variant X1, mRNA TACCTGATATTTTCGACGACTGTCAAAAAACAGTCACGTGTGGTCGCCGTTACGTCGGGTGTACACTTTA GCCAAGACTTCTGTCCCAATTGCATTTTCGAAAGAATTGAAGGATGGATACATATACAAACTTGGGACAG AGATTTTAAGAGGTAAAACGTAGAGTGAACATGACTTGTGCCGAAGCTAAACTGAGCGATAAGAGCATAT ACCCGACCTTTGCCAGGACGATTCCAACAGACGACCTCTTGACCGAAGCCGTAGCCGTTCTCCTAGAGCA CTTCAACTGGTACAACGTCAGTATCGTGTCTTCGTCGGCATCCAACAAGATCAGTGTAAGCGAGAGCCTG CAATCGAAGCTGCCAACCAAGAATATATATATCAGCGACGTCAAGGTGTACACAAGCCCTTACATCCCTC CTCAGTTTGAAGAAGATAAAGAGGAACCAGAGATGCGTAAGATTGTAAAGGAGACCTACGAACACACTAG AATCTACATATTTTTTGGTGAGATCTGGGAAGTTTACGAACTGCTGAACGAGATGAATTTCCATGGGCTT TTGGAAAACGGTGAATACATGGTGATCTATGCCAACCAAGAGAACTACGATGACAAACAACTTCATCTAT TTCAAGGAGATCCTTACCTGCGTCAACCTTCTTCGAAGGTAATGATGTATTACCGGACGTTGTTGGCGCT CTTCCTTTCACCTGCTACGGACCCGAGCTACAAAGATTTCAAACGGAGAGCATATCAACAACTTCAGGAA GAGCCCTTCAAATTCCCATTCGGAGATGAAAAAGACCCTTTGGGAATTCCTATCGAGGCTGCCTACCTCT ATGATAACGTGTATAATGTGTATGCCCCGGCACTCAACGAGACCTTAGCCGAGGGTTACAGCATGAGGAA TGGTACAGAGATCCTCAAAAGGATACTATGCAGGAAACACGCCAGTATTACGGGGAGACCGAAGTATATT GATGCACGTGGTGATGCCTACGCTGATATCACTGTCATTGGTGTCAAGCTCGGTGAAGAAGTTGATGAAA AATTTGGATATATCATGCATCCAGTGGCCACCATCAAAATCACCAACAGTACACCGGCAGTTGAAAGATC ATGTCTAGGAAATGGTACATCGTTTCAATGGGTTTACGAGCCGATCAATGGCACCTTTATCCCATGGATC AGCGGTGGTGTTCCCCTGGCTGTCCCCAAGTGTGGGTTCTATGGTGAATTCTGTGATACGCCATACAGAC CCGTTGTCGAGATCGTATCGGGGGTCGTCGGCGGTCTCCTCCTCATCATCCTCATCGTCGCCATCGCTGT GTATCGAAATTGGAAATACGAACAAGAGCTTGCAAGTCTTCTGTGGAAGATTGACTATGCAGATATTCAA ACTAAACGCCATAATGGTTCAACTATCTCAGCGATTAGTAAGCTAAGTCTTATGACAACAGACAGTAAGA ACTCAATAGATCCTTACAGATGTCAGATCTTCACTGAAGTAGGAACATATAAGAACATGCTGGTCGCCAT CAAAAAGATTCACAAGAGACACGTGGACCTCACCAGATCCGTGAGAAAAGAACTGAAAATCATGAGGGAC TTACGTCATCCTCACCTAAATCAGTTCATCGGCGCATGCGTGGATCCACCCAACATATGCACCATCACAG AGTATTGTCCTAAAGGAAGTTTACAGGATATCTTGGAAAATGATGAAGTCAAGCTGGACAGTATGTTCAT TGCATCTTTAATCGGAGACATCTTAAAAGGTTTGAGCTGCCTGCACGCTAGTGAAACACATTCACATGGG AACCTTAAATCCAGCAATTGTGTGGTGGATAGTCGATGGGTGCTGAAGATAACGGACTTCGGTTTACACC AGTTTAGGAGCGGTAGCAACCCGCCGGAGATTGGTGAACATGCGAAATACGAAAAACTTCTTTGGCGGTC CCCCGAGCTTCTCCGAGACCCTGCACCAAGACCAGAGGGTACCCAGAAAGGAGATATGTATGCACTAGGT ATCATCCTTTATGAGATGGCTACGAGACAAGGACCGTACGGCAAGTGCGTCTTGGGACCAAAGGAAATAG TTGACAAAGTGACACACCCATTGGACCCTAACACACCGTTCAGACCTAATGTAATGGAGGTGGAGGATTG TCCTAGCTGTATGCTGACTGGTATGCAGGAATGCTGGCGGGAAAACCCTGATGATAGACCGGATGTCAAA GCCCTTACGACACGACTGAAACCCCTCCAAAAGGGAATGAAACCAAATATCTTGGATAACATGATAGTCA TCATGGAGAAATACGCAAATAACCTAGAAGACATTGTAGAAGATAGGACCCATCAACTTATTGAAGAGAA GAAGAAGACAGATAATCTACTCCACCAGATGTTACCGAAACCTGTGGCGAATCAGCTAAAACGTGGAATG CAGGTTGTTCCAGAATCGTTCGAATGTGTGACAATTTTCTTCAGTGATATAGTGGGCTTTACAAGCTTGT CCTCAGAGAGTACACCATTTGAGGTGGTTGACATGCTGAACGACCTCTACACACTCTTCGACGAGATCAT CAGCTACTACGATGTGTACAAAGTGGAGACCATCGGCGACGCTTACATGCTGGTCTCTGGACTTCCTCTC CGGAACGAGAACAAGCACGCAGCCGAGATAGCTTCGACATCACTCCACCTGCTGGATGCTGTAAAGGCCT TCAAGGTTCGACATCGGCCTGACGTCAACCTGAAGCTGAGGATCGGCATCCATTCGGGGTCGACTGTTGC CGGAGTTGTCGGGTTGACTATGCCTAGATATTGTCTCTTTGGAGATACCGTCAATACTGCATCAAGAATG GAGTCGAACGGAGAAGCCCTCAAGATTCATACCAGCTCGGAGACCAAGAATCTTCTGGAGCAAATAGGTG GTTTTGATGTAGAGGAACGTGGCCTTATCAGCATGAAAGGCAAGGGCCAGTTGGTCACCTACTGGTTGTT ATCCGCTGACCCTTCGTATCGCCGAAGCTCACCATTCCGAACTGCAGAAGAAAACTTAACCGTCGGCCTA TTTGATTCCCCGCATGGCAACCATTCAAATCGCCATTCTAAGATCAACTCGCAGCCACAGAAGGAAGCAT TTGCTAAGCGACTGGAAGCCGATGGCCGACCTTCTAATCCCAACGTATGCCGTGACGTCATTAAACCTTT CCCAGATCAAACTGGCGTTGACCGCCAGAGACCGCATTCCATGTTTGCACCCGGTACTCACGGCGGTACG CCAAACCACTTTCCCAACTCGACTCTCATTGATTTCAGCCAGCTGAACAACTCGAATGAAAATTCTCCCA AAGTTACAGACCGATTACTTGGACACCTCGATAGACACGATAGCAGCGAGGCAAAGCTGGATTTGTCATC ATGCACGAATTCGCTGTTAGACAAGCGTCAGAGGCTAAATGACAGTGCCTTGGAATACTCTAGCAGAAAC AGTAACAGCCAGATCAAGGAAGGTCTTCTTGACAGCGAAGTTGAGACCGTTGTATGAGGGCGCTGTACCT TTTTTAAAAAATGACTGCAGGAAGAGGGTCTTCACAAGAAACCCCGACAAACTCATGTGACTTTCAAAAG CACAGTACTACGTTATTATGAGTAAACTTTTACGGGATGTTGTTCTCTTGTGTTGATGCACTCATTGTTA TGCTTTGTTGCCGAACTTTTGGCAAGCGGTGAATAACATTCAGATTTATATCCCGATATTACAAACTGAT GGCAGCATTATTAGCCTGTATAATCACTATGGATATGTCTTAGGAGTCCGCATCTATGTAAATAGTTCAT TCTTTGCGATTCACGGTGAAATGTTTGTATAATGGATAAGCACTCTATGAAAATAAATCCACCTTTGTCA CGTTTATCAATGCATTCATTTCGGAAAACTTAATTTATCTGTGAATTTAAAGGATTTGAATTCATCAGTC ATGGATGACAGCCTCGCCGTGGAACACAGTTCTTGTAAAATTGATACCACTTGGACAAGAATTGGGAAGG TTTTCTTTTAAACGTGCAAGGTCCATTTAAGAGAGTGACGTGGCAGCTTTCGCATTGCATGGAAAATTGG ATTTTACCCTTCTTCAAGCTGGATGGAAATAACAATGGTTTTATCTTTATCATGACAATCTTTGTTTACA TTGTTGTTCTGCATTGTTATTGTTATATGTTTTGCAACGATTTCAAAACCACACTATTAGATGATCATTG GTGACTAATACGAATTCTTCACATGCCCGATGTAAGTGTTTCCAACATCAAGGTTGAGTTCTCTCTCACA CCGCATCCCTTTATAAAGCGGCACTTTGATAACATATCGCAAGTATGTCATACAGTTCAGGATGAAGATA ACTGTATATAATGTATACATTCGTTTCGTTGAAGTAGATGCTGAGGACATATTTCTCTGTAGACATGAAT TCAGTCTACCCTATGCGACTGCTACAGTGGAGGAACTCATTTCCTTCTTTCAAATGTGAATGCAATGTTT TTTGCAGTAATTTTGTGAAAAAGAGTCTTTTACATGACGTATAAAATGTGTTATTCGTTATCATTTAGTA AATGTTACTACAGGGATGCCAGACCATTAATCTCCCTTCTAACCCGGTGTTAGCACATTGCCGAATACCA ACTTTATGTTGGCAACGGAAAGATAACGAAATTCCAAATAAAGATTTTTCGGAATTCTGTAGTTGCCATG TTTACACGGGATGTATTTTATGTTTCTTGATAAACTTCTGGTATCCCTGTAACCTTACACTTCACAATTC TAACTTCGAGATATCTATTGAGCTTCTAGTATTACTAAAAACACGCATCGTGTTCGAACAGTTTTGTGTG AATGCTGACGTAACCTATTACGTCACTGCTTCAAAGAGCTGGGTATGGACCAAATTTTCAGAAGTGAAAT CGGAAAAAGTAGTTTGATTGGACTGCAAAAAAAAAGTGGAAGAGTCGGAAAAAAACAGGAGATCGATTTT TGTGAGGTAGCGGGAATAGCATGAATGTAAAATGATGGTAGGAATATTTCCATAATCTCATTTTCCCCGC CGGTTGAGTTTCACTGTGAATTTATCTTGATTTTCATGTTCTCGTGCAATTTGTTTGATGTTTTGTCAAA AGGCATATTCTCCTTATTCACAAAGTTATTGTGTATGTAATACAATAATAATGTACGGGTTGGGGCGGCT ACACATCTTTCGATACGGGAAAGACGATCGAAAGGTGATGTTATTTTTCTCAATGGAATAAAAGGGGTAA TAAACTTACACAACCAAGGCCTTTATTCCTTTGCCTTCTTTCTTCGAGTTTCGTCCTTCTTTGTTTTTTT TTTCCTTTTTCCTTTTTTTTCAAACACTTAAAAATCATATAAGGTGGTCGCTCCTCGTCCCTTCCCAGAA GCGCCATCCCAGGTCGTATGTCCGGAATCATATGTGTACAGATGATGACTTAAATAGGTGATATGTTTGA TGATTATTTCATGTAGATATTTAAGTCTCATTGCCTCCGGAAAAGTGCAATATCAGATTACATGTCACAA GAATTTAAAGTTATTGAATATACATTTTATTTTTTATTTGGATTTGAAAATCAAATGCGCAATAAGAATT TTTAGACGCTCAGCAGGTGTCATTTTCATCTAGGTTAGAAATAAGGATATTGGACTGCTGTGCTCAAAGA CGATTTGATCCCAGTTATTCCCAGTTAATCATTTATATTGTAATTCTAATTACATGCTATAACATAGAAT ATATCTATTATAGAAATATAAGACGATATTTGTTTGAAGGTTGATGAACGCCCCCCCCCTCCATGGAATA AACGATTTGTATTTTTCATCTTTTTCCCGATTTATCTAAAAGAAATTGTACGACTATTGAAAGCATATAT AACTAGCCCGATTCCCAATGCAAATCAGAAATCTCAAATCTTGTAATTACCTTATTTTGAACTTCCTTCT TCCTGAAATAAATTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds