Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038214100.1 PREDICTED: Patiria miniata ankyrin repeat domain-containing protein 11-like (LOC119739243), mRNA GAGCAAGGCGGCGGCGGGGAAAGGGTACTTGCTAAATTTTCGCATGTTATATTGATTGTGAGTTTTCGTG GTCGTCAACGTTTCTCCTTAGGAATCAAGGAAAAAGATAATACACCTGCGAGAAAAACGGAAAGGATTAC CACCGGCAAGTCACTGAAAAGTCACACACATCTAAATTGGAAATACAGAGTTACTTACAGTTACGTCTTG CCCAGGTGGAATTGAAAATGACTTGGATCGTCACTTGCTACTAGCCGGCCGCAGGATGGAGGAGCTGAGG TAGTGTCCACGATGCGACAGAAATCTCCTCGGACGCGGAACGCAACCCCCTGATGACCACTTCTTGCCAG TGTACAAGTGAGCGCGTCTTACTTCCCAACGAGCAAGATCTATGGTCCAGTATTCAGGAATGGCTGAGAA GACCTCTCCACATAGGAAGGAGAAGCAAGGAGGGGTGAAGTCTCCCATGGCAACCAAGGGGGAGGGGGGT AAAACCCTCAAACGCAAACTCTTCACTGGTGTCAATGGGGAAGGGGCTGAAGACAAGAAGCCGCCCAAGC CGACGCCGAAGCGCAAGAAGCCCACGTCCCAGCCGGGCAGCCCGACTCTCCTGGGAACGCCGGGGCGCTC CATCCCACTGTCGGAGAGGCAACAGTTGGCTCTGCTCATGCAGATGACGGCTAACGAAGAGAACAACAGC CCAGTCGTCAATCACCCTCCAGCCAAGCCCCTCACGACCCCGGGATCGGTGGGCGGCGTCAAGAACAAGG CCAACAAGCGCAACGAGCGAGGGGAGGCCCCACTCCACCTAGCCTCCATCCGGGGCGACGTCCAGGCCAC CAAGAACTTGATCAAGCAGGGGGCGGAGGTCAACGTGCAAGACTTTGCAGGTTGGACGCCTCTCCACGAG GCCTGTAACCATGGCTACTATGAGGTTGCCAAGCTGCTTCTCAAGGCCGGAGCATTCGTTAACACCCAGG GACTAGAAGATGACACCCCGTTGCACGATGCCGCCGTGAATGGCCACGTCAAGGTGGTGGAGCTACTCCT GAAGCACGGAGCCAACCCTCTCCAGGTCAACAAGCGAGGCAAGGCCCCCATCGACCTGGCCTGCAACGCC GAGATCCGCAGCCTCATGAAGAATGAGATCATCGAGACCAGCAGCGACACCTCCCTGGCCGAGGCCCGGC CGCCGACGTCACCGGAGAGCGTGGACTCGGTGGACGGTCATGAACTCAGAAATGGCCAGGCTAGACCCGA TCCGTACGAGTTTGACCATCAGGATCGCAGTCCCAACGAGCAGAAGATAACGATTCACTGGGCGTCGCCG GACAAATCTGGCAAGGGGGCAATCATGGAAATCACCAGAACTATCCCCAAATTGAACGACCGAGCCACCC CAAACTCCATGACCTCGACAACCACGTCGGACAGCGATCTGTTTGATCCCCACTTAAACACAAAACCTTT GAATAATGCTGCGCCTAATGTAGCTGTTCTTAAACAGCAGCAACAACCGCAGCAGCAGCATCATCTGCAG CAACAGCAGCAGCAGCAACAGCAGCAACAACCTGTGCGCGTAGTCGTTCCCGAGGTTCGGAACTCGCATC AGGACTTGAAGTCCCAAGGAGAGGTGTGCAACAACGCCTCGCGTTCCTCCCCAAAGGAATCCAACACTGT CCCCATGTGTGATACGGGGGTGCCCAGGGTAGCGGGCGCCAAAGAGGACTCGGACAGCAGTCTGAGCGAT TTGAACTTGATCATGTCGGACGACTCCAATGCAGCAACCGAGACCAAAGGGACCTCAGGTAAAGCGGACA GCACCACGGCAGAATCCACGCTCTCCTCATTCATGTGGAACACCGCCAATGGAAGAACTTTACCGCAATC GAGTTATGTCAGCAACGCCATGGTTCCCACGATAGACTCCAGCGCCCAGCAGCCACAGCAGCCGCGTGTG AATGCCGCTAGTATATCATCAGGCTCTGTTTTCCCGGAGAACTCTTCCAGCAAGCAGGACACGTCCCTAG CCAGTTTGAATGTGAACAGTAAAGCCTCCTCGTCCTCAATGAGCCCCCTGGCTCCATTCAGTACTTCGTC TCTGTCGTCGTTGCCTGGACTGCCTCTCCAACAGGCGCAGAGCCGCATTGCGCCAGACACGCCCTCAGAG TCTGTTGACTCGCAACAACGCCCATCCAGTAACGTTGTCGTCGGGCAGGATTTGCCGGTGCAGCCGTCGC AGTCCACTCACCCTAACCGCTTAGTATCAGCTACCTCGGCGAGTCTGACCAGTACCAATTACCAAACGGA ACAGAAGCCAGTCGATAGACCGGTGCCTGGCTGTGCTGACACTCAGGCTACAAACAGTGTGTCAGAGTGG AGGACAGACACCAAACCAGTCATGCCTATGGCTGATAGCCGCTTAGGAAGTGAGTCGGATTCAAGTATGG ATAGACTTATACAACCTCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGAGGCGGGATCGCCCAAA GAGACACAAAGATCGCTCGCATCAAAAATCACATCGGAGACACCACAGACATCAAAGTCAATCTAGTCAG GGGTCACGCTCCTCTAAGGATGAACGCTCCTCTAAGGATGAACGCTCCTCTAAGGATGAACGCCACTTCA GTGAGGAAGCCAGTACCTCGTCCAAGTCCCCATCACCGGAGGTGAAAGCTGTCGAGAATGGACAGGTTGA GCTCGCGGAGAACTCCCCGGATGGCCATAAATCAGACCCCCAACAAAGAGCATCACCTTTCCCAGTTGCG AGGGAATACTACATCGTCTCGCAACCATCCTCGGCCGATAACGCCGGAGAAATCAAAGCTTTGCTGCTCA GACCGCGGGATCCCAGTACCATCCCACAAACTCGGCCCAAAGAGGCCACCTCCTCTCCGACATCTGTCTC TTCCACAAGTGCCTCTCTGCCTCCGGAAAACAACCAAACACCAGCTGAGCAGGACCCCACGACCTCCAAC AGGATCACAGACTCTGTCGCTGCCTCATCTAGCACTGACTCGACCAACCGCAAAAGTCCTGTCTTACGCG ATTTGGAAAGGCGGAGATCGCCAGCAAGGGGAAGCCCGGATGTGACATCATCGTCATCGTCCACCTCGAA CCAGACGGGGAAAGGCTCTCCAAAAGCTCAAGAGCAGCCTCCAGCAGTGCAGGAGAAACCCCAACCTCCC AAGCCCACACGGACACTGCGATCTAACTCAGGAATGGTGAACTCTAACAGCAACAGTGCCGCCAACGAGA CCAACGGTAACGAGAAAGAAATCGCGATGACCACGCCCATGACCAGGAGTCGCCGCATCCAAGCTGCCGA GTCCTCCTCCTCAACCTCCACGCCGGAGCCCAACTTGGAATCCTCTCATCCCAGGAAGCGAAAAATGGCA CGGCACCGCCAGCAGCAACAGAATAACGGGGAGTGCTCAACCAACGTTGAACGGCAGTCACCGCCGGCTC CCTTGGAGAGAATCAACACCATGGAGATGTTTCTGAACATCAGGCAGAGGATTGCGGCCCGGCAACGGAC GATGATAGCCAACGTCCAACCTAAGCAACCCAGCGGTTACAGCGAGTACCTGATGCATAGGAAGACCTAC CTACTAGCCAGTGATCCAGACACCAAGATCAGCGTGGCTATCCCTAATATGGAAGCACCTCCTGAGCTAC ACAACATCTGTCTGCAACAGTTCCGAGAACAGGAAAAGAAGCGACATGATCTAAGATGTCGACATTGTAT TGAGAGAGAGAAACTGATGTTAGCAGCTGAGCAGGACATCATCCGAGTGTACGGTCGAGCAGCGAGGGCC TTAGCCAATCAGAGCATTCCATTCAGCGTCTGTACGGTTCTCAAGAACCAGGAAGTCTACAACATGCCCG AGCCCATGCCACATGAAGATAGCAAAGGAAGCATCCGTCAACGCTACAACGGTCGACAGCTACTGTCGTG GCTGCAGGACGTGGACGACAAGTATGAGAAAATCAAGGAGGACCTTCTTCAACGGCATCAACACGAGGCG GCGTCGCTGTACGCCATACAGAAGCTGGAATGGGAGCTCAAGTTGCAGGAGTTGAAGCTGTGGGACCCCA AGAACCGCCCCCAGATCCCGTCCTGCCACGTGCCCATGGTGGAGGTCGACAGAGACCTGGATCTGCTACC GGCCTAGAGGTCTTAAACCATCGAGGAAAAAACAACGGATGAGGTCGGAAAATCGGATTGATTACGGAGA GGATTGAAACCCATGTAACTGATTTACACTTGGGGTAACCGGCGAAGGATTTGAAAAGGGATGGGCGGAG TTATTGAATGGGAGGTGATCCCGTAAAGGGGGTGGATGTTCGGGTTGGGTCATTCGGGGGATGTTGGCAT GGTCGATTCGTCGGTCAAAATTTTGCCCGCACGATTTCGTGTTCAGAGGTGGTTTGTTAATGGGAAGTTT TATGAGCGAAAATTTTGGTAGCTTGTTGGCACTAGAAACAAAAAAAACAGTAAGGTGGCGGTGGAATATG GAACAGGTTTGAACGTGTACCGAGTGGTGATTTTGAAAAGATTGATTTTATGACTGACTAGTTGGCAAAC CTGTGAGGTTTTTATTGAGGTGGTTTTTCTTTTTTTTTTTTGGAGATTTTATTTGGTCAAATTGAAGGAT TGGGTGATTGGGATGTGGGGACGAAAAGAGCTTTAGGGGAACGTAACTACCATTTCCAGAAGAACGACCG TTTTGCGGAGAGGAAAATCTCGCTGTCATTTTGGTGGAATTTATTGTTATTTGTTGGGGTTTTTTTTTAT CCCAAGGGATAACCAGAAGAACCAATTATTTGAGGAAAATATTGAGAAAAAAATGTTGTCTTTATCACAG GTACATTGTAAATAAAGTATACATATAAAACAAATGTATATATATATAAAAACAACTTGTGTTTGTAAAT TACACATTGACAAAATTCACACATGTACAGAGAGTTACTCTTTAACACGAATTGATTGTTGTTGTTTTTC TAACAAATCAAGAATCTGTTTCTGATGGAGATTTGTTCTTAACAAAATTTGGAAAAAAGTTTAACAACTG AGGGAGGTTTCCCAAGTTGTTGTTGTTTTGTTTTTTTAAGTGATTGAGCTTTGTGGATTTTTTTTTGTTT TTAGTGATGTTGACCAAAAATTCTGTTTTTAATAGTGGAATTATCTGTTATATCGTTGGGACTCGTGTTC ATCGATAACTGAAGAGTTCTATTCAGTTTTTAGGGTCCTTTATTTTTTTTCCCTGCAGAGATTTGTTTTA AATTTTGCCATTTTTTTTTTGGTTTGATGTTTGAAGACAGTTTGATGTTGGAAAACTGCTTTTGAAGAAA CAGCCTGCGCCAGTTAGTTTATGTAAATTAAAAACAAAAACCATCAAATTGAAAGTTGACCATTGTTTTT AAACTTCGGGTTTAGGTAAACTAGTTAAATGATAAACTAGTGCACAGCGTTTTAACTAGATTAACTAGTT ATATGGTTTTATCAGTCAACATGGTCCACAGCTAATCCTGTTCAACTGTAGATACCTTACTAATAAACCG AAAAATCCATACGTGTTTCGCTTAAACCCCACCCCCCCCCCCCAAAAAAAAACTCTACACCCAATCACAA AGTATGTTAATAACCTAAACTAGGTCAAGCCTTGGCAATCTTAACAAAAATAAATAGTAATTTTCCCGAC CCTAAAAAAGAGATTTTATAGAAGCTATGGAAGGGAAAAACCCTTATTATTGTAGATTTCCATTCATTTT ATACAGAATTTGTGCTGGATTTTGTGAAATCTGACCATTAGTCCGTTCATTTTAAGTATTATCTTTTCAA AGCCACTCTTTGTCAAAAATAAAGGTATCTAGAACATATTCCTGTAACGATGAGAACTATACTTGTGCAT GTACATTTTCTTGGTGCAAAGAAAATCTAACGTATGTCCCTCAAAATTAGCATTTCCCTATATAAGCCCA AAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds