Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>NM_001123510.2 Strongylocentrotus purpuratus sodium/potassium ATPase alpha subunit (LOC404637), mRNA ATGGTTGGTGGTGGTATACTGGGCCGTGGCGAAAGCTACCGTGTTGCAGTTCAGACTGAGGTCCCTGATG ATGGGCGCAATGCTGCTGGCAAACCCAAGAAGGGCAAGAGGAAAGACAAGAAGAGGGACTTGGAGGAGCT CAAGAAAGAAATGGAATTTGATGATCACAAGATCTCACTTGAAGAATTGGTCGTTCGTCTGGATTCCAAC ATCACCACTGGTTTGACTGTCCAGCAAGCAGCTCATGTGCTTGCCCGAGATGGACCCAACTCCTTGACCC CACCCCCTAAGACACCGGAGTGGGTCAAGTTCTGCCAGCAATTGTTTGGTGGATTTGCCACCCTGTTGTG GATTGGATCTATCCTCTGTTTCCTAGCCTATGCTATCGAGGCTGCCACAAAGGATGAACCGAGCAGTGAC AACTTGTACCTGGGTATTGTGCTTGCTAGTGTTGTTATCATCACTGGATGTTTCTCATACTACCAAGAAG CCAAGAGTTCTAAGATCATGGAATCTTTCAAGAACATGGTTCCTCAGGAAGCTCTTGTGCTACGTGGCGG TGAATGGCACTCCATCAATGCTGTGAATGTCGTCCGTGGTGATGTCGTTGAGGTCAAAGGTGGCGACAGG ATCCCGGCTGATGTCAGAGTGGTGGAATCTAAGTCATTCAAGGTGGACAACTCATCTCTGACTGGAGAGT CTGAACCTCAGTCTCGCAGCCCAGAATTCACAAGTGATAACCCTCTGGAGACCAAGAACATCGCTTTCTT CTCTACCAATGCTTCGGAAGGAACTATGCGTGGTATCGTCATCAGCACTGGTGATAACACCGTCATGGGA CGTATTGCTGGTCTGGCCTCTGGATTGGACGTCGGTGACACACCCATCGCTAAGGAGATTGAGCATTTCA TCCACATCATCACAGCTGTGGCTGTCTTCTTGGGTGTATCCTTCTTCTTCCTTTCTTTCCCTCTTGGATA CAACTGGCTTGAAGCTTGTGTCTTCCTCATCGGAATCATTGTGGCTAATGTGCCTGAGGGTCTTCTAGCC ACTGTCACTGTATGTCTGACCTTGACTGCTAAGCGTATGGCCCACAAGAACTGTCTTGTTAAGAACCTGG AAGCCGTCGAGACCCTTGGTAGTACCTCTACCATCTGCTCTGATAAGACTGGTACCCTAACTCAGAACAG GATGACCGTAGCTCACATGTGGTTTGATAACACCATCGTAGAGGCAGACACAACAGAGGATCAGAGTGGT GGTCAATTTGACAAGTCTTCACCGACCTGGATGGCCTTAGCTCGTATTGCTTGTCTCTGCAACCGATCTG AATTCAAGGCTGGACAAGAGAATGTCCCCATTCTAAAGAGAGATACAACCGGAGATGCCTCTGAATCTGC CCTGGTAAAGTGCGTTGAACTTTGCATGTTCAATGTAACCGAGTACCGTAAGAAGAACAAGAAGGTCTGT GAGATCCCATTCAACTCCACCAACAAATACCAGGTTTCCATCCATGAGACCGAAGGAGATGATCGTAACC TGTTGGTCATGAAGGGTGCTCCTGAACGTATCTTGGACCGTTGCACAACCATCCTAATCAAGGGCAAGGA AATCGATATGAATGAAGAGATGCAGACTGCTTTCAACAATGCTTATCTTGAGCTCGGAGGTCTGGGAGAA CGTGTGCTGGGTTTCTGCCAGTGCTACCTGCCAGCTGATCAATTCCCTCTTGGCTTTGCATTTGATGCTG ATGATGTGAACTTTCCTCTGGAGAAACTCTGCTTTGTTGGACTGATGTCCATGATAGATCCTCCTCGTGC TGCTGTACCTGATGCTGTAGGAAAGTGCCGCTCTGCTGGAATCAAGGTAATCATGGTTACTGGTGACCAT CCAATCACAGCCAAGGCTATCGCTAAGGGTGTCGGCATTATCTCTGAAGGTAATGAGACCCGTGATGACA TTGCTCAACGTCTTGGAATCCCTATTGAACAAGTCAACCCCAAGGATGCTAAAGCGATTGTTGTCCACGG TACTGAGCTGAAAGACATATCCCGTGAAGATCTCGACGCCATCTTGGCTGACCATCCTGAGATCGTCTTT GCTCGTACTTCACCTCAGCAGAAGTTGATCATTGTTGAAGGTTGTCAGCGTGCTGGTGCCATCGTAGCTG TGACTGGTGATGGTGTCAATGATTCTCCTGCTCTCAAGAAGGCTGATATTGGTGTTGCTATGGGTATCGC TGGGAGTGATGTCTCCAAACAAGCAGCTGATATGATCTTGCTCGATGATAACTTTGCCTCTATTGTTACC GGTGTTGAAGAAGGTCGTCTGATCTTTGACAACTTGAAGAAATCGATTGCATACACTCTAACCAGTAACA TCCCTGAAATCAGTCCTTTCCTCATCTTCATCTTGGCTTCTATTCCTCTACCGTTGGGTGTCGTTACCAT CCTCTGTATTGATCTGGGTACTGATCTGGTACCTGCCATCTCCCTTGCCTATGAAGAGGCTGAGTCTGAT ATCATGAAACGTCGACCTCGTGATCCTCAGAATGACAAGCTTGTCAACGAACGTCTCATCAGTGTTTCCT ACGGACAAATTGGTATGATCCAAGCTTCCGCTGGTTTCTTTGCCTACTTTGTGATCATGGGTGAGAATGG ATTCCTACCCAATGATCTCATCATGTTGCGTAGCAAGTGGGACGACAAGGCAGTTCTGAATGTGGAGGAT TCCTATGGACAACAATGGGGCTTCTACCAGCGTAAGCAGCTTGAATACACCTGTCACACTGCTTTCTTTG CCTCTATCGTGGTTGTACAATGGGCTGATGTCATCATCTGTAAGACACGACGTAACTCACTCATCCATCA AGGAATGAACAACTGGGTGTTGAACTTTGGTCTGTTCTTTGAGACTGCTCTTGCTGCGTTCCTGTCCTAC TGCCCTGGCCTAGAGAATGGTCTTCGTATGTACCCACTCAGGATCGGATGGTGGTTTGTTGCTTTCCCAT TCTCTCTTCTCATCTTTGTCTATGATGAGTGTCGTCGCTTCATCCTCCGTCATAACCCTGGTGGATGGGT TGAGCTGGAGACATACTACTGACTCCTTCAATCCCAATGCTTCTACCCCGTACCAGAGACCACCACACCC TCTCCGACCCCTCCTCCTCCTCCCTCCTCATCTGAACCAATCAGGATGACTCAATCATCCAGCCATTCAC CCAACTTCCACCCTTACACGGCTAGTCAACGGTCATACCTTCGCGCACACCGCCCTGCCCCATCCCCTAT CACGACAGCTATCCTCAAATCTCTCCCTCCTCCTGAGCTCCTAACCCCTAAACCAGATCTTCCCTCTCGT CCCATCAAGGAAGATCGATTGGAGATGCCAGCAGCCCAAGCTCTCATTCTCAAGTTTGCTGATAACCTGT GCAAGCAAACTAAACATTGCCCAGGAAAAACATTCTCTCGGATTCTTCACGGAACTCTTGCTTTTTTAAG ATACCCATACTTCATCACGATATGAATTTCAAACAAACTCAAATTTTTATTCATAATACATTTGATTTTT ATTCTGTCATGGTACTATTTTAATACTTGAAATTTCTATTGTAAAGCTTTATAAATGACTGAAAATAGAA AACTTATTGAAAAGTATTCTTTAAGAAACTCATTGATTCAAACATCATTCTATTCAAACTCTTATTGATG TTTAAGTATGCAGATATATTGTTAGTATTGAATTTACAGGTGACAACTTTGTGTGAATGAAATATTGTTG ATGTTAATGCAAGGTTATCAATGAGCTTGAGAGAGAAGAAGGCTTCTACGGGGTAGTAGCATTGGTGTCG TCATGATTGTAATCAAACTATTAATTGGTGAATTATATTGTGAATTTGGTGATATAGAAGCATTTCATAT AAGAAAATGCAAGTTTAGTAAGCATTGATGTTATCACAAATTATTCAGAGTTCATTAACAAAAATGAGGT ACAGGATACCATTTTCGGCTAGTTAAGATTATCTTTTTGGTGAATTGTTTGGAAATAAGAAATTTATTTA GAGAGTTATGTCAGTTGATGTGTAGACTAAGGTTGAAGGCATAGCTCATCAATGCACATTAGTATGCACT GTACTTTGTTTGGTGTAGAGATAAACATCAACTAACATATATCTTGTACCTCTCTTCTCTGTCCCCAAGC AAAATATCAGAATTTTTTTAAATGACCAACTGTTCTAGGGCAGTTGATTTTAATAAACATTAAACATTTT AGAATTTGTGATTAAAAAGTAATAAATGTGTTCTGGTTGTCCTTGAATAATAAATTGTTTTTAACGTTCC CCTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds