Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011668914.2 PREDICTED: Strongylocentrotus purpuratus INO80 complex subunit D (LOC582717), transcript variant X2, mRNA CCCCTTCGTCGTGTGAAGGCGGAATTTATGGGATTTCCCCCATTATTCGATGTAATTTTAATGACGAAAA CAAGACAGGAATTTTAGTGATCTTATCATGAATTTCAATCCTTAATTTTCCAATGTTGGCACTCACGTGA TGTACGAAGGCAAGCATATTCACTTCTCAGAAGTTGACAACAAGCCACTATGTTCGTACAGTGCCAAGTT GTGCAAGCAGCGGCGCCTCAACGGCTATGCTTTTTGCATTCGCCATGTGTTGGAAGATACATCTGCTCCC TTCAAGCAGTGCGAGTTTGAAGCAAAGTACAATAAACTGCGCTGCACCAATCCCATCCCTGGAGAAGAAA ATAGAAAATTTTGTAACAGCCACATGCAGGTCTTGGGACTGGTACCAAAGAGAGGAAAAAAGAGAAAAGG GGACCAATCTCCAGACAGTCGAAATGATTGCAGAAATGACTCATCAAATGCAGGCAGCAAGGGAGGCAGT CAAGAGAGAGAAAAGCACAAAAAGAAATCAAAGGACAAAAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAG AAAAGCATAAGAAAAGGGGGAATAGATCAATTTTAGATGATGTGATGTTTAACTCTAAAGGCAATTTTGA ATTGAATGACCTTAGTTTAATGTGCAGAAGTAGGCCACCAGATTTTGCCAGTGCTGTGATTGGTGCTGAC AATCTTACAATTCACTCAAACTCAATAGAAAGAGCAATCAAGACGAAATCAAAGAGAAGGAGGGATGGCA GCACGCTACATGAAAGACTTCAGGAGAAGTTGGAGAGGAACAAGCAAAGATTGCGTCAACAGCGAGAAAA AGAAATTCTTGCCAAATCTATGCAGCACACACAATTCACCAATGCTGCTTCCCTGGAACACACTAACAAT CTACTTGATAGTGGAGTAGCACAGTACAAAAATTCTTCATACCTCGATTCCCAGAAATTCCTTCCCCTCA TACCTCCATTGGTTGAGGGTAAAGGACGAGTCCCAAACCTTCCATGGCCCCAGATGCCCCAGCATATTTC CTCGCCAAGGGAGGCATTTGTGAAGCTTCAACGGAAGCACCCAAGAGATCTCTTTGCTCGCAAGTTAGAC TCAAAAGCAGTTGACCTGCTAAGAGAACGTCTTCAGCTTGATGAAGATGAGAGGACTGATATATTTCCCT TAGGTTTAGACTTTTCAGACACAGATGATGAAGAGAGTGAGGAGGTTACAGACAGAAGGTGTAGAAATAC ATGTAAAGAACAATATAGTGTAAGTCACATATCCAGTACTGATGAAACCAATAGCTCATTGAGCCGGCAC AGCAGATTGAAGCAGCTGAAAAATCACCTCCAGCGAGATAGAAGGAAGCTAGAACTTGGTATACAATGTG ATGAGCATGAGCAGAGAGACATGAGATGTTCTAGTAAACTCCTAGCTGATGCTGCCAGAGACCATCCCTT TGGAACAGCTGTATCTATACTCAGGGTTCAAGAAGAGACATTACAAAGGCCCAAGCCTCAGGCCCCTCCA GAGAGGATCTGCTGCAGTAAAGAGGAAAATGATGATCCTTGCCAAGAGGAGGCTATGCCATACAGCAAGC ACTGCTTCAGACACGTACTTGAAGATGAAGATCAAGTATTGTTCTACCAGTGTGGTGCTGAATTCCCAGG AGGATTCCGCTGTATTGAGCCAAGTTTTGACATGCTTAATGAGCAGCCTCTATGCCAGGAACATGCCAAG AGAGTGCGAATGGAACCAAAGTCAAAGAGACCAAGAAAGAAGACCAAGCCTTCAGCTCTAACCAGGCCTT TCAAGAAGAAAAAGAAGAACCAGCGCAGGAAGTACCGACCACAGAAACCAATACCTCCACTTGAACCTCT GCAAAACTACCAGCTACCCATCAGCAGCACCCCTGTGATCCCTGTGGCTACTCCTCATCCCCCACCTCAC ACCCCTGCATTCAGGAGCATTGGTGCCCATGATCTCCCTGTCCATCTGATGGACATGTCTGCTCTGGAAG AAGTCATGAATGCAGAGGCAGTGGAGTCACCTCCTGAAGACCTCAACTCAGACGCAGAGGAGGAAGCTCT TTCAAGCGTTCTACAAAACCTGAATGACATCTTTGAAGGAAGGAATGGTGATTTCCTGCCTACAAGGGAG GAGGCAGAAGCCTTGGAGCGTGCATTCTTTCAAGCATCAGAGGATGTCAATGATGCTAAGCTTTCTCTGG AGCAGCTCTTTAACGACGGAGAAGAAAATAGCAACTCGCTGCCAGGAGATGTGACTGAGGCTGCCATCAG CCAGGATAGTTCAGATGGACTCCCCAGCGATCTTCAATCTGCAGCAAATAGACTTATAGCTGATACCATG AGACAGAACTCGAATGATGGTTCTAATCATAATGCAATCAAGCCACCGTCCTCTAATCTCACCAATGCAG TGCCTTTGAGTAATATGTCTGCCACAGCACAATCTGGCCAGGCCTTCACCCTACCTAGCACTCTGGCAGG CCATGGGGTGTTTACGAACAGTGTTGCTCAATTCAATGGTCCTGTAATCCCTCAGACACAATCTCTGCTG ACACAGAACACCCTCAGCACCACAGCTGCAACGACAGAAAACCATCATGATTCCTTGCGTCACACTGTCC TCAATGGAGTCATAAGTGGCAATCGTGCAATGGTGCCCTCGTTCCCTATCTCTCAACCTATGTTGTCTCC GCATGGAGGACAGCAGGTGCCTCACCCTATGATGTCACCTCAGAGTCCACAAATCATCACAACCACCTTG CCACAAGCTAGCCCTAATGCTTCATCTGGAATGAGCCCAAGTGCATCAGCGCCAACCCCTTCTCAGGCTG CTCATCAGGCAGCCCTACCCAGTTTCCGGCAAACATGGAGTAGTGTTTCCAACATTCAGAATGCCTTGCG CCGTACCAATTCAAACAGTGTACCAGCTGTGAACGGCATCAACTCTAATGGCGGACTCCCTTACAACGTG CATACGAGTCAGTCAATGGGTTCCCAGAAGTTGCCAAGTTTTAACTCTGTGGTAGCAGGAATTACCCAGA ACCATATTCCACAGCAGCAAAGTGGATTCGCACCTGGTCTGCCTTCACCTCAACCTACTAGTGGGATTCC TACCCCTCCCTACACTGCACCCAATATCAAAAACATACCTCCTATCATCAAACAACAAGGAACGTGACAT ATCAAGCCGCTCGTGGCTCATAAAATATTACCAATTTATGTCGAGAGTATTCAATTTTTTTAGTTTGACA ATGTTTTGTATATTTGTTTATGTTGAGATTCATATGTACATTTGGAATATTTACACCCTAAATTCTTTCT CAGAAGCCATTTTGAATAGATTAGCCATGCTTTAATATTTCTTATTTTTGTCAAGAATGACAGGTTCAGA TGTGGCGTTACTGTGCCTCATTAAGTAAATTACTTTTGATAGTGGGGAGTTACTTTTAGAGCTGTTATAC AGAAAGGAGCCCAGAGAATCAAACAATAACTGAAACCATGATTTTTAAAAAGGTGAATAATTTGGAGACA GTTATACTTTATGCAGATTGAAATACAAAGGTGCCATTTTGATGATTCAAGCATTGAGAGCCAGCTGAGC ATTCATTCTCATCAAAGTATAGTTTGTTGAGCACTTATATAAATATATCAGGCAGTGATTCTATCGGTGC TCCATAGAGAGCCATATTTTAATTAGCACCATTGTATATTTTTTCAATCTGTGAGATCACTATGGTACAT ATGATTTATCTTCATATTAACTTATTCATGGTTGCTGTATAACAGCTCTCAAAGTTAGCAACAATCAGTT GGCCTTCAACAAGGAATTAAGGATGAACTACATGTAGTTTTAGGAACATGATACAACCCTTACTCTGCAC TCTGTAAGTCTCTGTGTCACCTTGTTTACCTGTTTTTATGTCGTGTATTTCTGTGCATGTATTCTTTTAC AAACATTTGCACATAGCTTGATCTGCTTCTCTGTGTACCTGGTACTTTCTTTACATGTTTGAAAAGGATG CATTTTTCATGGTGTTGAAAGTTATTTCAACAAGGAAATGTGTTTTGTCTGTCTGTGGGACCAAATGAGA AGACATGCCAGTTTTTTGAATTATTTCAAACATTATTTCTAAGGGAATTGCTTGAACTGCAATTTGTGTC AAATTTATCTACAAGTTTCATACCTGTTGAATTTATTACTTTTATTTTTTGCACTTGATGTACAGTGTAG GGATGAGTTAATCTTTTCTGTCTTTCTTTCTTCTTTCTCTTCTGCCCCAATGGAATTACACCCTGGAAAG GTATTTCAGACTAGGTTTTCTCTTATGAAATGGCTATCAAGAATTAACTGATTTGCCCCCATCAAAAGTG GTCTGTATTAGCTTTATTCCTCAATATTTCAGTTTCTCCAAATTCAACCTTCACTGTTTCTTCTACCTTG CAGTTTTTCAATTTTGAGCCACAAGAGTGTTAACTCACATGCTTTTAACACAGAGATAATGCACTTCTGG ATCTGAACTGATGATTTTTTAAATAGAAGAACCTAAGGCATGTTTAGAATTGTACTCATTTATTTTTCAC ACACTGTCACACAGAATTTTTAGTCCCAATAAATAAGGTATATGAACCAGGACACTTTTTTCCCCACCAT TGCTTGCTGCATTGGAGTACTTAACGTATCCGGCTTGCGCTTGTACTTGTAGATACCTTGTGGCTTCCAG CCAGTCTAAACAGCTACGAATGATCCACATTGATCGCAAAGCCTCCAATCAATCGCAAACTTACAAAGTC GTATCTCTTTAGTATAGGGTTGCGATTGATTTGAAGCGATGGCAACTGTTTGTTGTAGGTTGTTGGAAGA TGATCCCTTCCATTGGCTGATGATGTCATTACACTCTCTGTCAAGGGTACAACAACTGGAAGGTGTTCTT CTGTTTCTACATAATCTGGAAGCAGTGTAAAAGTAATGCATATGTTGTTAGAAATAATGTATGTGGAGTT TATTGTAATCTTTGTATAATTTTGTCTTAGAGTAGCATAGTTTTCTTGATAAATGTGTAATCGAGGTTTT ACCTTTCCAGGATCCACTGAAGTTGTATTTATGACAGATGAACATATTCTGGTACCATACCATTTGCATA ATATGAAAGCCACACACCTTCACAGAAATAGTCAATTTTTGTTTCATGTGTAACAGAACTCTATTTAGAT AATTGCATGTGAGCGTACAGTGTATTTCACGATTGATACTGCTGTCATATTTCAACAATATGCTGGACCA AATTTATGTAAATTATTTTTATACAAATCTATTTTTATGTAGCAGCAATATAGTGTGGTTGCTGCATGTT GCATTCAACTTGTGTTTACTGTGTGCATCTGAGCAAAGGGTTGGCTTTAGAGTATAGATATGAAATAGGG CTAGCTTGGTTTCATCTCAAAGTTTATATATTGTAATTTGGCACCTGTCTTGGTTAAAATGTAATGACAC CAATTTTCTTACATATCTGTTAATTTGTTTATTATTAGTAAATTGTATGCACTATTTGGCTGCCAAAGGA TGGATGTAGACAAGAAATGGAATTTGTCGCTCAGTTTCCTACAAAGAAAGGACAAAAAAGACATTAATAT TAACAAGACAAAATTACCATTTGATAGAAGAAATACTGTAATTCTGTTCTTAATCATCATTCATGATTTT CTGAAGTGTTTTTGTAATATACGGAATGCAATTACACCTATTCATCTCCTAAATCTAGGCAAGCTGGCTG TTCAAATTATTTAGTTCATGAATATGATTTATTTCCTAGATTTTCAAGGTATTCAAATTTTGTTACTGTA GAAGCATCTTTACAATACAGAAAATAATGCAGTACAGATGGTCCTAATGTGGTATATTTTTGTCTTTTTT GGGGGGGGGGGGATGATCTTTATAAATCTCTTTTTCTGTTGATTTTAGCACTTTAGTGTGTGTGTGTAAT CTAGTAGATTCTAGGCTGCATATTTAATTTGTTCTGCTTGTACTCACCTTCCAAAGCCATCTCAATCATT CATCAAGTTCACATTGTGTAAACATTTTCTCAGGTAAAATGGCTTTCCGCCATACTTTTGATGAATTTGA TTAAATTTCTAAGATCTTATCACAATTTGGCACATGTGATCAACTACTATTGCAGTCTCATTCTAATCAT ATGCTTTATGTTTGTATGAAAAAGGTATTGTTACATGTTTACAAAGCTATATGGGAAGGGGGTGTAAACT TCAGACGTGGGTTTACAGCATACTTATATCTTTGAAGTTAATGTTTTATATTGATAACTTTGTCAGAATC AATTTCCATTATTGAATGAAGCAATTATATCTCAAAGTGCTGGCATATTTAGGGGCATACTTTGGTCTGA AGAAAAAAAATATATATTACTGAATACTTTGATTATATTCTCAAAGTCTAACCTTTAGTGAGACTTAGTG AGACAAACGATTTTTAAAGAAAGGATAGCGAGGAGAAATGTTTTTGATGTGCATTGTTTACTATTCCTTC TGTTCTAATTTTTGTTTTGATGTCTTCAAAAGAATGTCATACCATTGCTCTCTTACCAGCCTGCATACCT TTGATATTAAGCCAATAAAAATTAAAAACAAATGTATTTTTCTCTTGTTTCTATAGAGTAATAAAGCAAA TTGTATTTTTCCACAAAAAGACTTAACAAATAGAGTTACGCCCCCACACTCTTTTTGCTGTTGTTGATTA CTTTACAATCTTATCTGATACATTAAGACCTGTCAAAAGAAATTTATGACATTGTGTGAAATGTAGATCA ACCATTGTACTTGCCCATTTTATATTAGTGAAAAAGGCTGTAGAAGAATATGCTGAAAGTGTTGTTTCTC TCACTTAGAATTAGGTACAGCAAGTGGCCAACACACAATTCAGATTTCTTTGTTTGGAGGGGGGATGTGA TTGAACATTCTTAAGAACATTTGCATAAAATATCAACTGTTGCAATTATTGTTTCTACTGTTAAATACCT TATGCCATATCATATACACACAGAGATTTCTTGAAAAAATGTCGCCTTTAACAATTGCTTATTGAATTTT TTATCACAACTTCATTCATATAACTATTTTTTGTTACGTCACATTTTTAATTTGCCAATATTAATATTTT CTCATATTTTGACAGTTCAAAATATATTTGAAAGTGCAAGAAACTTGGGCATATCAATGCATGTATGCTT TTAAATCATATATTTTGATATTAAAAAAACGTCGACAAATTCTAGCTCGCAGTCACATATTTTTTCTTCA CAAGTTTTGTTCTAAACAAAATTATGTGCTGGTGACTGGTGTATCATATTACTACATGTATGTTTGAATG GTACTGCACTGCAAAGTCTGCCACATTGGTGTAGTGTGTTTTATTGAGCTTTACAGTTCCACTGTAGTTA CGAAGATGACTTTTGAAATCTATCTGTTAAAGAAGAGTATGCTTTGCACCTTGTTAGGTTTCATTCAGTG TTTGTCTCCTACAATACACACTCATTATAACTGATAGCATGGAATGAAGATTAGAAAAATGTTCACATCG TGGTATTGGCCAGAAATTTTGTTTACAATAATTTCCACTGTATAACCCTAAACCTTCTGCAAAATTAAAT AAATAACTCGTGGAATATCCTTCATTGAGATCTGCGAACAAACATTCTATAAAATATGCCTAACGGAAAA GCCAGCTGTATTTCCAAACTTTTTTCCAATAACTTATTAATAGGTTTCAACATTTTGAACATGAAATTAT TATTATTTTTGAGGCTTTGGAATTTTTGGAATGTCCATGAAAACAGACATACTTTATTCCACTACTCACT TAATAGGTATATCATCAAGAGTTGTATAATTTACTAGTCTGAATTTAGCACGACATACACCAGTGCTATT ATTAGTAGTACATGTACCTCTCAACCAAATTTCTAGACTTTTTTCCTTCTTCAAAGTTTGTTGCACTATA TTGTGCATTGTAAATGTATCATGCAATCTGGGTAGAGAGAATATAGAACTAAGATTGAACAGTTGTGGAG TAAATGTATAAAGATGCTGTGGAGACAATCAAAATGATTAGTTATTATTCCTTATGTAAAGGAGTAAAAC ATAGTACTATGCAACCATGTTAATGTGTAAATGTATACATTTTCCACAGTTTCATCTATATATTTTTGCT TTCAAAATATGGTAAATATTTCAATTCAGTCATCAATCTCAGATGTGTTGTTCATGTTGCTATTTTTGAG AAAATCTCTTTTAACCACAACCACAGGTCTTTTTAGTTTTTATTTGGGTAATAAGCTGACTGTCTTCTGT CTAGAAGTGGCTGATTGTAGGAAAAAGTTAAACATTTTTTGTGTGATAGCACCTAATAAGAAAAGATTGT TGGGTAGATTTGAACTCGAGGCATCATGCTCTGCATGCATGGAGTGAACTTTAGACGTCTTTGTATGACA TGTACTGGCCAAGTAAAAACCGTCGGCCAATGAAACCAACTGAGAGCCAGAAGGATATTTAAGCTTTTAC TTAGAGTTAATAATGCCTTTCTGACTCTTAATAAAAAGAAATATTCATTAATGCACTCATTTTAGTTCAA TTCTTTTCACCACAATGTATTCAATGAATTGACAGAAATCATGTTAATGGCCAGATAAACAAAATAACAG GGATCATCAATTTTGATTCCTGTTCCACTTCTGGACAATCAAGAGCTATAGATTGTAACAGTGGTGTATC ACATGAATACTATAGAATACATGCGTGTAGGCCTATATGCAGTATAAAGAACCATTTTCTATTGTAAAAT GAGAGATTTTCAAAAGGGTAGAAATGTTTCAGGTAGCCTTTTGGTCAAAGGAAACTCATGAACGCCAAGT CTATTGCAGTCTGCATGTGTTCATGAATCTTTATTCGCTGTGTAAGGAATGTACTTGTTTATTGAAATGG ATATATATGTGTGTAATTGATGTCTTGTTTACTTTTTGTAATATATGTAATTGAGAATTAGGAATTGCAG CACTGTCTGCATCCTGTGTATTGTGGTATATTTTCTACAAGAGAGAGAGAAACACTATTTTGCCACAAAG AGGATGGAAAATATTGTCAACATTAAATCTGTTTATGGCAGGTGTAAGAAATCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds