Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_782659.5 PREDICTED: Strongylocentrotus purpuratus INO80 complex subunit D (LOC582717), transcript variant X1, mRNA GGGACTGTCGTTGTATTGTTAGCAGCTGCTGCGCCCTATATTATGCACTGACGAGCACGCAAACACCGCC GCCATTTTGAAAATTACGTCTTCGCCTAAAATCGTTCAATTTCTAGCCATAAGTTTGCGGTATTTTACCA CTTTTGCTTCGCCAATGTTGGCACTCACGTGATGTACGAAGGCAAGCATATTCACTTCTCAGAAGTTGAC AACAAGCCACTATGTTCGTACAGTGCCAAGTTGTGCAAGCAGCGGCGCCTCAACGGCTATGCTTTTTGCA TTCGCCATGTGTTGGAAGATACATCTGCTCCCTTCAAGCAGTGCGAGTTTGAAGCAAAGTACAATAAACT GCGCTGCACCAATCCCATCCCTGGAGAAGAAAATAGAAAATTTTGTAACAGCCACATGCAGGTCTTGGGA CTGGTACCAAAGAGAGGAAAAAAGAGAAAAGGGGACCAATCTCCAGACAGTCGAAATGATTGCAGAAATG ACTCATCAAATGCAGGCAGCAAGGGAGGCAGTCAAGAGAGAGAAAAGCACAAAAAGAAATCAAAGGACAA AAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAGAAAAGCATAAGAAAAGGGGGAATAGATCAATTTTAGAT GATGTGATGTTTAACTCTAAAGGCAATTTTGAATTGAATGACCTTAGTTTAATGTGCAGAAGTAGGCCAC CAGATTTTGCCAGTGCTGTGATTGGTGCTGACAATCTTACAATTCACTCAAACTCAATAGAAAGAGCAAT CAAGACGAAATCAAAGAGAAGGAGGGATGGCAGCACGCTACATGAAAGACTTCAGGAGAAGTTGGAGAGG AACAAGCAAAGATTGCGTCAACAGCGAGAAAAAGAAATTCTTGCCAAATCTATGCAGCACACACAATTCA CCAATGCTGCTTCCCTGGAACACACTAACAATCTACTTGATAGTGGAGTAGCACAGTACAAAAATTCTTC ATACCTCGATTCCCAGAAATTCCTTCCCCTCATACCTCCATTGGTTGAGGGTAAAGGACGAGTCCCAAAC CTTCCATGGCCCCAGATGCCCCAGCATATTTCCTCGCCAAGGGAGGCATTTGTGAAGCTTCAACGGAAGC ACCCAAGAGATCTCTTTGCTCGCAAGTTAGACTCAAAAGCAGTTGACCTGCTAAGAGAACGTCTTCAGCT TGATGAAGATGAGAGGACTGATATATTTCCCTTAGGTTTAGACTTTTCAGACACAGATGATGAAGAGAGT GAGGAGGTTACAGACAGAAGGTGTAGAAATACATGTAAAGAACAATATAGTGTAAGTCACATATCCAGTA CTGATGAAACCAATAGCTCATTGAGCCGGCACAGCAGATTGAAGCAGCTGAAAAATCACCTCCAGCGAGA TAGAAGGAAGCTAGAACTTGGTATACAATGTGATGAGCATGAGCAGAGAGACATGAGATGTTCTAGTAAA CTCCTAGCTGATGCTGCCAGAGACCATCCCTTTGGAACAGCTGTATCTATACTCAGGGTTCAAGAAGAGA CATTACAAAGGCCCAAGCCTCAGGCCCCTCCAGAGAGGATCTGCTGCAGTAAAGAGGAAAATGATGATCC TTGCCAAGAGGAGGCTATGCCATACAGCAAGCACTGCTTCAGACACGTACTTGAAGATGAAGATCAAGTA TTGTTCTACCAGTGTGGTGCTGAATTCCCAGGAGGATTCCGCTGTATTGAGCCAAGTTTTGACATGCTTA ATGAGCAGCCTCTATGCCAGGAACATGCCAAGAGAGTGCGAATGGAACCAAAGTCAAAGAGACCAAGAAA GAAGACCAAGCCTTCAGCTCTAACCAGGCCTTTCAAGAAGAAAAAGAAGAACCAGCGCAGGAAGTACCGA CCACAGAAACCAATACCTCCACTTGAACCTCTGCAAAACTACCAGCTACCCATCAGCAGCACCCCTGTGA TCCCTGTGGCTACTCCTCATCCCCCACCTCACACCCCTGCATTCAGGAGCATTGGTGCCCATGATCTCCC TGTCCATCTGATGGACATGTCTGCTCTGGAAGAAGTCATGAATGCAGAGGCAGTGGAGTCACCTCCTGAA GACCTCAACTCAGACGCAGAGGAGGAAGCTCTTTCAAGCGTTCTACAAAACCTGAATGACATCTTTGAAG GAAGGAATGGTGATTTCCTGCCTACAAGGGAGGAGGCAGAAGCCTTGGAGCGTGCATTCTTTCAAGCATC AGAGGATGTCAATGATGCTAAGCTTTCTCTGGAGCAGCTCTTTAACGACGGAGAAGAAAATAGCAACTCG CTGCCAGGAGATGTGACTGAGGCTGCCATCAGCCAGGATAGTTCAGATGGACTCCCCAGCGATCTTCAAT CTGCAGCAAATAGACTTATAGCTGATACCATGAGACAGAACTCGAATGATGGTTCTAATCATAATGCAAT CAAGCCACCGTCCTCTAATCTCACCAATGCAGTGCCTTTGAGTAATATGTCTGCCACAGCACAATCTGGC CAGGCCTTCACCCTACCTAGCACTCTGGCAGGCCATGGGGTGTTTACGAACAGTGTTGCTCAATTCAATG GTCCTGTAATCCCTCAGACACAATCTCTGCTGACACAGAACACCCTCAGCACCACAGCTGCAACGACAGA AAACCATCATGATTCCTTGCGTCACACTGTCCTCAATGGAGTCATAAGTGGCAATCGTGCAATGGTGCCC TCGTTCCCTATCTCTCAACCTATGTTGTCTCCGCATGGAGGACAGCAGGTGCCTCACCCTATGATGTCAC CTCAGAGTCCACAAATCATCACAACCACCTTGCCACAAGCTAGCCCTAATGCTTCATCTGGAATGAGCCC AAGTGCATCAGCGCCAACCCCTTCTCAGGCTGCTCATCAGGCAGCCCTACCCAGTTTCCGGCAAACATGG AGTAGTGTTTCCAACATTCAGAATGCCTTGCGCCGTACCAATTCAAACAGTGTACCAGCTGTGAACGGCA TCAACTCTAATGGCGGACTCCCTTACAACGTGCATACGAGTCAGTCAATGGGTTCCCAGAAGTTGCCAAG TTTTAACTCTGTGGTAGCAGGAATTACCCAGAACCATATTCCACAGCAGCAAAGTGGATTCGCACCTGGT CTGCCTTCACCTCAACCTACTAGTGGGATTCCTACCCCTCCCTACACTGCACCCAATATCAAAAACATAC CTCCTATCATCAAACAACAAGGAACGTGACATATCAAGCCGCTCGTGGCTCATAAAATATTACCAATTTA TGTCGAGAGTATTCAATTTTTTTAGTTTGACAATGTTTTGTATATTTGTTTATGTTGAGATTCATATGTA CATTTGGAATATTTACACCCTAAATTCTTTCTCAGAAGCCATTTTGAATAGATTAGCCATGCTTTAATAT TTCTTATTTTTGTCAAGAATGACAGGTTCAGATGTGGCGTTACTGTGCCTCATTAAGTAAATTACTTTTG ATAGTGGGGAGTTACTTTTAGAGCTGTTATACAGAAAGGAGCCCAGAGAATCAAACAATAACTGAAACCA TGATTTTTAAAAAGGTGAATAATTTGGAGACAGTTATACTTTATGCAGATTGAAATACAAAGGTGCCATT TTGATGATTCAAGCATTGAGAGCCAGCTGAGCATTCATTCTCATCAAAGTATAGTTTGTTGAGCACTTAT ATAAATATATCAGGCAGTGATTCTATCGGTGCTCCATAGAGAGCCATATTTTAATTAGCACCATTGTATA TTTTTTCAATCTGTGAGATCACTATGGTACATATGATTTATCTTCATATTAACTTATTCATGGTTGCTGT ATAACAGCTCTCAAAGTTAGCAACAATCAGTTGGCCTTCAACAAGGAATTAAGGATGAACTACATGTAGT TTTAGGAACATGATACAACCCTTACTCTGCACTCTGTAAGTCTCTGTGTCACCTTGTTTACCTGTTTTTA TGTCGTGTATTTCTGTGCATGTATTCTTTTACAAACATTTGCACATAGCTTGATCTGCTTCTCTGTGTAC CTGGTACTTTCTTTACATGTTTGAAAAGGATGCATTTTTCATGGTGTTGAAAGTTATTTCAACAAGGAAA TGTGTTTTGTCTGTCTGTGGGACCAAATGAGAAGACATGCCAGTTTTTTGAATTATTTCAAACATTATTT CTAAGGGAATTGCTTGAACTGCAATTTGTGTCAAATTTATCTACAAGTTTCATACCTGTTGAATTTATTA CTTTTATTTTTTGCACTTGATGTACAGTGTAGGGATGAGTTAATCTTTTCTGTCTTTCTTTCTTCTTTCT CTTCTGCCCCAATGGAATTACACCCTGGAAAGGTATTTCAGACTAGGTTTTCTCTTATGAAATGGCTATC AAGAATTAACTGATTTGCCCCCATCAAAAGTGGTCTGTATTAGCTTTATTCCTCAATATTTCAGTTTCTC CAAATTCAACCTTCACTGTTTCTTCTACCTTGCAGTTTTTCAATTTTGAGCCACAAGAGTGTTAACTCAC ATGCTTTTAACACAGAGATAATGCACTTCTGGATCTGAACTGATGATTTTTTAAATAGAAGAACCTAAGG CATGTTTAGAATTGTACTCATTTATTTTTCACACACTGTCACACAGAATTTTTAGTCCCAATAAATAAGG TATATGAACCAGGACACTTTTTTCCCCACCATTGCTTGCTGCATTGGAGTACTTAACGTATCCGGCTTGC GCTTGTACTTGTAGATACCTTGTGGCTTCCAGCCAGTCTAAACAGCTACGAATGATCCACATTGATCGCA AAGCCTCCAATCAATCGCAAACTTACAAAGTCGTATCTCTTTAGTATAGGGTTGCGATTGATTTGAAGCG ATGGCAACTGTTTGTTGTAGGTTGTTGGAAGATGATCCCTTCCATTGGCTGATGATGTCATTACACTCTC TGTCAAGGGTACAACAACTGGAAGGTGTTCTTCTGTTTCTACATAATCTGGAAGCAGTGTAAAAGTAATG CATATGTTGTTAGAAATAATGTATGTGGAGTTTATTGTAATCTTTGTATAATTTTGTCTTAGAGTAGCAT AGTTTTCTTGATAAATGTGTAATCGAGGTTTTACCTTTCCAGGATCCACTGAAGTTGTATTTATGACAGA TGAACATATTCTGGTACCATACCATTTGCATAATATGAAAGCCACACACCTTCACAGAAATAGTCAATTT TTGTTTCATGTGTAACAGAACTCTATTTAGATAATTGCATGTGAGCGTACAGTGTATTTCACGATTGATA CTGCTGTCATATTTCAACAATATGCTGGACCAAATTTATGTAAATTATTTTTATACAAATCTATTTTTAT GTAGCAGCAATATAGTGTGGTTGCTGCATGTTGCATTCAACTTGTGTTTACTGTGTGCATCTGAGCAAAG GGTTGGCTTTAGAGTATAGATATGAAATAGGGCTAGCTTGGTTTCATCTCAAAGTTTATATATTGTAATT TGGCACCTGTCTTGGTTAAAATGTAATGACACCAATTTTCTTACATATCTGTTAATTTGTTTATTATTAG TAAATTGTATGCACTATTTGGCTGCCAAAGGATGGATGTAGACAAGAAATGGAATTTGTCGCTCAGTTTC CTACAAAGAAAGGACAAAAAAGACATTAATATTAACAAGACAAAATTACCATTTGATAGAAGAAATACTG TAATTCTGTTCTTAATCATCATTCATGATTTTCTGAAGTGTTTTTGTAATATACGGAATGCAATTACACC TATTCATCTCCTAAATCTAGGCAAGCTGGCTGTTCAAATTATTTAGTTCATGAATATGATTTATTTCCTA GATTTTCAAGGTATTCAAATTTTGTTACTGTAGAAGCATCTTTACAATACAGAAAATAATGCAGTACAGA TGGTCCTAATGTGGTATATTTTTGTCTTTTTTGGGGGGGGGGGGATGATCTTTATAAATCTCTTTTTCTG TTGATTTTAGCACTTTAGTGTGTGTGTGTAATCTAGTAGATTCTAGGCTGCATATTTAATTTGTTCTGCT TGTACTCACCTTCCAAAGCCATCTCAATCATTCATCAAGTTCACATTGTGTAAACATTTTCTCAGGTAAA ATGGCTTTCCGCCATACTTTTGATGAATTTGATTAAATTTCTAAGATCTTATCACAATTTGGCACATGTG ATCAACTACTATTGCAGTCTCATTCTAATCATATGCTTTATGTTTGTATGAAAAAGGTATTGTTACATGT TTACAAAGCTATATGGGAAGGGGGTGTAAACTTCAGACGTGGGTTTACAGCATACTTATATCTTTGAAGT TAATGTTTTATATTGATAACTTTGTCAGAATCAATTTCCATTATTGAATGAAGCAATTATATCTCAAAGT GCTGGCATATTTAGGGGCATACTTTGGTCTGAAGAAAAAAAATATATATTACTGAATACTTTGATTATAT TCTCAAAGTCTAACCTTTAGTGAGACTTAGTGAGACAAACGATTTTTAAAGAAAGGATAGCGAGGAGAAA TGTTTTTGATGTGCATTGTTTACTATTCCTTCTGTTCTAATTTTTGTTTTGATGTCTTCAAAAGAATGTC ATACCATTGCTCTCTTACCAGCCTGCATACCTTTGATATTAAGCCAATAAAAATTAAAAACAAATGTATT TTTCTCTTGTTTCTATAGAGTAATAAAGCAAATTGTATTTTTCCACAAAAAGACTTAACAAATAGAGTTA CGCCCCCACACTCTTTTTGCTGTTGTTGATTACTTTACAATCTTATCTGATACATTAAGACCTGTCAAAA GAAATTTATGACATTGTGTGAAATGTAGATCAACCATTGTACTTGCCCATTTTATATTAGTGAAAAAGGC TGTAGAAGAATATGCTGAAAGTGTTGTTTCTCTCACTTAGAATTAGGTACAGCAAGTGGCCAACACACAA TTCAGATTTCTTTGTTTGGAGGGGGGATGTGATTGAACATTCTTAAGAACATTTGCATAAAATATCAACT GTTGCAATTATTGTTTCTACTGTTAAATACCTTATGCCATATCATATACACACAGAGATTTCTTGAAAAA ATGTCGCCTTTAACAATTGCTTATTGAATTTTTTATCACAACTTCATTCATATAACTATTTTTTGTTACG TCACATTTTTAATTTGCCAATATTAATATTTTCTCATATTTTGACAGTTCAAAATATATTTGAAAGTGCA AGAAACTTGGGCATATCAATGCATGTATGCTTTTAAATCATATATTTTGATATTAAAAAAACGTCGACAA ATTCTAGCTCGCAGTCACATATTTTTTCTTCACAAGTTTTGTTCTAAACAAAATTATGTGCTGGTGACTG GTGTATCATATTACTACATGTATGTTTGAATGGTACTGCACTGCAAAGTCTGCCACATTGGTGTAGTGTG TTTTATTGAGCTTTACAGTTCCACTGTAGTTACGAAGATGACTTTTGAAATCTATCTGTTAAAGAAGAGT ATGCTTTGCACCTTGTTAGGTTTCATTCAGTGTTTGTCTCCTACAATACACACTCATTATAACTGATAGC ATGGAATGAAGATTAGAAAAATGTTCACATCGTGGTATTGGCCAGAAATTTTGTTTACAATAATTTCCAC TGTATAACCCTAAACCTTCTGCAAAATTAAATAAATAACTCGTGGAATATCCTTCATTGAGATCTGCGAA CAAACATTCTATAAAATATGCCTAACGGAAAAGCCAGCTGTATTTCCAAACTTTTTTCCAATAACTTATT AATAGGTTTCAACATTTTGAACATGAAATTATTATTATTTTTGAGGCTTTGGAATTTTTGGAATGTCCAT GAAAACAGACATACTTTATTCCACTACTCACTTAATAGGTATATCATCAAGAGTTGTATAATTTACTAGT CTGAATTTAGCACGACATACACCAGTGCTATTATTAGTAGTACATGTACCTCTCAACCAAATTTCTAGAC TTTTTTCCTTCTTCAAAGTTTGTTGCACTATATTGTGCATTGTAAATGTATCATGCAATCTGGGTAGAGA GAATATAGAACTAAGATTGAACAGTTGTGGAGTAAATGTATAAAGATGCTGTGGAGACAATCAAAATGAT TAGTTATTATTCCTTATGTAAAGGAGTAAAACATAGTACTATGCAACCATGTTAATGTGTAAATGTATAC ATTTTCCACAGTTTCATCTATATATTTTTGCTTTCAAAATATGGTAAATATTTCAATTCAGTCATCAATC TCAGATGTGTTGTTCATGTTGCTATTTTTGAGAAAATCTCTTTTAACCACAACCACAGGTCTTTTTAGTT TTTATTTGGGTAATAAGCTGACTGTCTTCTGTCTAGAAGTGGCTGATTGTAGGAAAAAGTTAAACATTTT TTGTGTGATAGCACCTAATAAGAAAAGATTGTTGGGTAGATTTGAACTCGAGGCATCATGCTCTGCATGC ATGGAGTGAACTTTAGACGTCTTTGTATGACATGTACTGGCCAAGTAAAAACCGTCGGCCAATGAAACCA ACTGAGAGCCAGAAGGATATTTAAGCTTTTACTTAGAGTTAATAATGCCTTTCTGACTCTTAATAAAAAG AAATATTCATTAATGCACTCATTTTAGTTCAATTCTTTTCACCACAATGTATTCAATGAATTGACAGAAA TCATGTTAATGGCCAGATAAACAAAATAACAGGGATCATCAATTTTGATTCCTGTTCCACTTCTGGACAA TCAAGAGCTATAGATTGTAACAGTGGTGTATCACATGAATACTATAGAATACATGCGTGTAGGCCTATAT GCAGTATAAAGAACCATTTTCTATTGTAAAATGAGAGATTTTCAAAAGGGTAGAAATGTTTCAGGTAGCC TTTTGGTCAAAGGAAACTCATGAACGCCAAGTCTATTGCAGTCTGCATGTGTTCATGAATCTTTATTCGC TGTGTAAGGAATGTACTTGTTTATTGAAATGGATATATATGTGTGTAATTGATGTCTTGTTTACTTTTTG TAATATATGTAATTGAGAATTAGGAATTGCAGCACTGTCTGCATCCTGTGTATTGTGGTATATTTTCTAC AAGAGAGAGAGAAACACTATTTTGCCACAAAGAGGATGGAAAATATTGTCAACATTAAATCTGTTTATGG CAGGTGTAAGAAATCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds