Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974643.1 PREDICTED: Strongylocentrotus purpuratus probable serine carboxypeptidase CPVL (LOC580043), mRNA CACATGAAGCTAGCTGGCTGTGCAGTGCAGTGCTCTTCCCTTTTTCGTGAAAACAAAGACAAAAAGAAGC AAATAGCCTGCTAATACTACTAAACTATAATGGCTACTTCTTATCCGAAGACCATCTTTCTTGGGACCAT GGCAATGTTGGCAATTGTGTCACTACCCTTGGTTTCCAGCAGGGGTGCTTTTAGGGCGATGTTCCACCCC AACCCACCGGCTTATGCCAGACAGTCAAAGGTCGATCCCGGGCAGCCTCTTNTTTTAACACCATACATCG AGTCTGGGCAAATAGCTGAAGGTCAGAAACTAAGTCGAGTTGGACCCCTTGATGGCACTACAGTAGAAAG TTATTCAGGATTTCTGACTGTCAACAGCACCTACAATAGTTCAATGTTCTTCTGGTTCTTCCCGGCCCAG AACAATGACCCATCAGCTCCTGTGTTGCTATGGTTACAAGGAGGTCCAGGAGGCTCCTCCCTCTTTGGAC TATTTGCTGAGAATGGTCCCTTTCTTGTCACAAAAGATCTAAAATTGCAACCCAGGAAATGGGCATGGAC TCAGAAGTATTCTATGCTGTATATAGATAACCCAGTTGGGACTGGTTTTAGTTTCACTCAGAATGATGCT GGGTACGCAAACAACGAGGAGGATGTAGCAGTCAACCTGTACAGTGCTTTGACACAGTTCTTCCAGCTGT TTCCTAAACATCAGAAGAATGAATTCTATGCGACAGGAGAGTCGTATGCGGGAAAGTACGTACCAGCTAT CTGTTATAAGATCCATACCGAGAACCCGACGGCTAAGGTCCACATCAATCTGCAAGGAATGGCCATCGGG GATGGTCTTGTTGACCCCTACTCGATGTTTCAAGGGTATGGCGACCTGATGTATCAGACGAGTCAGGTGG ACCTGAAGCAGAAGAAAGTTGTGGATCAATACACCGCCAAGGGAACCGACTTCATTAATCAGGGAAAATG GCTGGAATGTTTTGAGCAATTTGACATAGTGCTGAATGGAGACCTGTTTCCATATCCTACTTTCTACTTC AATGCAACAGGATCCAATAACTACTACAACTTCATGATGACAACTCTTCCAGCAGACACAAACTACTACA ACAACTACCTGGCTTTTCCCGAGGTGAGACGAGCCATCCATGTTGGCAACCTCACCTACAACGACGGCAG CAAGGTGGAGGACCACCTTAGGGAAGATATCTGCAAGAGCGTCAAAGACTGGACTGTGGTGCTGGCTGAT AACTACAGGTGCATGTTCTACAGCGGTCAGCTTGACATCATAGTCGGAGCAGCCCTCACCGAGAACTTCC TTCAAGGCTTAGCATGGGCTGGGCAAGACGGCTACCTCAACTCCAATAAAACAATCTGGAAAGTCGACCC AAGTGACACAGAAGTTGCAGGCTTTGTCAGGCAATACAAAGAGTTCTACCAGGTGACTGTACGAGGAGGC GGGCACCTTTTGCCTCATGACCAACCAGAGAGGAGCTTTGATATGATTGACAGGTTCATCACTAAACAAT CGTTTGACAAGTAAAGTCTCCCTCAGATATGATGTGGTAGACCTCTGTGTTTTTTTTTAGGATGATGTAA CTGTAATACTCTTCACATTTCTTTATCTTATAACAGAGAGCTCAATTTCCATTGCTATACATCATGCACA AATATATGCACAAAAGAAATGGTGAATAGATCACAATAGAAAAATATGAAATTGCCAATTTTGTGTAAAA CTGTTATAAACATTTAGAAATGTCTTATCCCTTAAAAACTATTCTTTTAACCCTTTCTGACCAATTTCTC TTATTTTTCTGCTTTGGGGACTTTTCCTTTGATGTTTGAATCCTGTTTGCTGTTGCTTTCATTCTATAAC TGGACCCCTCATGAAACTTCTTATTCATCAAATGTTTCAATATTTTCTACTTGACTGTATAAGTTACTTG TGTCATTGCATGTGATTATCTATGAGCATATTTGTTATAGTAATATGACACTTGTTATTGATAATTTGTT TAATGGAACAGGACCATGATTTTCCACAATACAACATCGGGACATTTTGAAATATGAAAGTTGTTGCTAT GTCAGGCATGTCCTATCATTTGCTTCCTGTATTTTTTAAAATAGGGCTTTTAAACAGTAGTATCCACCTT TATGTAACCTCTTCCTCAAGTGCCTTACACTGGTCCTCAGAATAAGGGGGGGGGGGGGGGGGGTTCAGGG GGCTCAAGCCCCCCTGACATTTTAACCAAAATTATACTGCATTGTGGGGACTTTACTCATCTTTGACCGA CCTTACTTTTAATATTTATGCATCGATTCTCTGCATAAAAACATGGATGTAGAAATGACACAATCATTTT TTTTCTTCACGTAGTGTTTGTTGTGTTTGAAAATACATTTGTATAACAAAAATTATGATCAAAGGAAAAT ATGAAGTGAGTCTGGGAATTGAGACTACATCTGAACATGTGCAAAACTATTTATGTGCAGAGAGAGGATG TGCCTCGAGATTCTTGATGAGGCTGAGCATGTCATTAACTGAAATCACATTTCCTGAAAATATTTTTGTT GTACTTTATGCCATATGGGATTTCCAGCAGTTAAAAGAAATGGCTCTTTTTTTTGACAATCAGTCACACA TTGCCATGGAATATTCCTCCAGAATTTAATCACTTGGAAGGTCTTAAACCTTAAAATGTTTTTGAAAATT TGTATTAAATACATTTATACAAAGAAGAAAAAATATTCTGCCTATGAATTTAGAAATCCTGTATAATTGG TGCCAAAGGAAATGGGATAATAATGGTAGTACAGCTTAAATTCAAGTTCCCCATTGCTGTCCTCCGTTTT TGAAATTTTTTCAAAGGTTAAAAAAAAATGTAACTCATGAATTGAACCTGGGCTCCTAGCTTAGAACGCC AGTGCCTTAAACCACTAGGCCATGGAGATTAGGTTAGTTCTAGTGGCAAGTTTCCACTGAACCATTATTC TTTTATTTCATTTTGCACTGTATGTATTTCTACAAGTTGCCAATTGCATGTGTTGTATACAAGTTATAGT ACACTCATTTACATGTTTGTATACCGGTACTCATATATATTTTGGTTTATTTACAATGTATACAAAAGTG TTCAAGTCATACTCTAAAAGATTGTATTTGTGATGTACCATGCTAGTCCTTATTTTAAGCCCACAACACG CTGTAAGATCCGACTGCGATCCAATTTTTGAAGAATTTTCAATAGCATTTGATATGAACATTCAAACATC TTAAATCTTTAATGACCAAGGATCTGAATAGTCTTCTGATTAAGAAAATCTAAATGTCAAGGGATTTTAA TGCTTCCATTGAAGAGGAAAAGCGAACTCAGCTCAGAATCGTAGTTAGGTAAGACCAGCAGTGGGATTGT CTACAATGCAGCTTTTGTTCTGACTAGAAGAGTACAATTCACAAAAATTCTGTTTTCAGTATCCTTAACA TTATTTAGAAGCTAAATCAGGAAGTTGATGTTTTTTTAGATTTCCACACCTAATATGATTGGAATTTCCC TGAAAATAGGATCACAGGAGGATCGTAAAGTGTGCTGTTTTTTTTAGAAATGCAATTACCCTCATTTCAG TGCAGAGGCTGAGACACATACATCTGGATGGATGTGTGTACAGGCATATGTTTGAAAATGAAGCGGATAT AGGTAGGCCAACGTAATTGAGATTGTCAAGTACTATATACTTCAACCAAGGACAACACATAGAAGAGATG ACCTTAGATACCAGTATTTGTTTGATTTTTATTTGATATTCGGTTACACATCGCCTATAAAGAATATTGC TTTCGATATAATCACTTGGAATGCACCAACTTTCAAATCTTTATTTCAAATTTGTATTCAGTGCATTTAT CAGAGAAAAATGTTGATGTGAATGATCAGAAAATCCTGTATAATTAGAATCATGCACAAAAATATTTATA TATGTAGTTACGTATACACGATGTATTTTTATGTGCAAGATTGCTTTTTGGACACACAGGGCAAGTTCCA TATTTACTGTATATGCTCATCCTAATTTTGAAGACATATTATGTACCTGTCTTTCTGCTCAAGGCTCAGG TATACATACAGGTATGTACAGGAATATAATGGAGATGACACTGGGTACAATAGAACTTTGGGATTCCAGC CTTTCAAGTACTCACTTTGATTTTAGATATATACATAGGTCTTTCATGTTTATACAAACAAGTACATTGC ACATGCTACTTATTATTTCCTTCTTGGGGGAAGGCTTGGAGAAGGGACATTAAAGGGAAAGCCCTCCCTG ACGTTTTAGTTGGTTTCAATAAAAGCAGACAAAATGGGAGAAACAGATTAGTGAAAGTTTGAGCCAATTC CCATCTAAACGAAATAAAAAAGTTCAGAATGTAGGAAATCTTTGATGTATCTTTTGAAGTCCTCAGCCAA TTTGCCCTCTATGTATTAAATTTCCTTTTTAGGACAACTTATTGATAAAGGAATAGATTTGTTTCAATAA AAGGTTGTGTAAGAACATATTTGAGTGAATATATTAACAATACATGTATGATTGATGACTTTCATTAGAG AAAATTAAATATTGTGTCGTTGTTTTTTAGTACAGAGTAAATGGAGAAGACTTTGCAAGATACGCAAAGA ATTGCCGATTTGCATTTGATGGATTGCAACTTCAAAATTAATATATTTGGTTTTTTTTTTTCAAATTAGA TTTAGTGCAAACTTTCACTCAACTGCTTCTCTATTTTGTTTCTGCTTCTATTAAAACCAACTTAATATCG GGGTGGACTTCCCCTTTTAGAAAATAAATGCATCATGGCATGAAAACATGGATATTAAATGATGATGGTG ATGATGATGATAAAGATATTATCATTAATGGTACAGGATAATTTCTGATTCATGCAATTAAATATATGTT TATATTTCAAGAATGTAAGAAATTTGAAAAAGAAATATGTACAGTGGATCTGTATCTCGATTTTAACTGT TACTCTGGTATTTTGAATAAATAAATCTGACCATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds