Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041617138.1 PREDICTED: Lytechinus variegatus TATA-binding protein-associated factor 172-like (LOC121422229), mRNA CGGGACTTACGTTCGCTCGATTGAGTGAAGATAATCCCAGCAAACTTTTCAAGTTTTATCATTTTACTTC ACCGTAGCATAGGATCCCAAGATTCAAGCTTCCTATGTTGATTTGATGTCTCCTAGATCAATATGGCTAC AAGGCTTGACAGGCTGTTCCTACTGCTAGATACAGGGTCAACACCAGTCACTAGGAGGGCCGCTGCACAA CAGCTGGGAGAAGTTCAGAAGCTGCATCCTCATGATCTTCATATCCTACTCTCTAAGGTTCATATATATT TGAAGAGTGGATCTTGGGAGACGAGGATTGCTGCTGGGCAAGCCGTGGAAGCCATCGCGAAGAATGTACC ACAAACTTGTCATCCAGTTGATCCTATGAAACCAGAACCAGGCGTAGACGGTCCACCCAGTATCAGTATT CCTTCAGTGCAGTCACAGCGTGATGCCACTCGTCTAGAGTTCTCAAAGTTTGATGTTGCTCGAGTCTTGG ACCAGGGCGCTTCCCTCCTTGGATCGGCAGGATCAGAGTACGAGCTTGAAGTAGATGTTGGTGGTGACCC TAAGGAAAGGCTGGCCAAACAGAAGAGGCTACTCCAGAAGAAGCTTGGTCTAGATGTTGGTCTTATCGGC GTGGAAACGGATGACCTCTTCAATGATGATGACCTGAGTACATTTCCTCAGACTCCAACAACCTCCAACC TCTTGAAACCACCAGCAAGTGCAGCTGACATTGTAGCCCAGGAGATGGCTAGTCTTGGTCCAGGGCTGAG TTCTAGAGAGAAGAACAGGGCTAAGAGAAAGGCTAAGCTGCTGGCCAAACAGAGGTCCAAAGATGGTCTA GAAGGAACAAGCATGGACAAGGAGGAGCCGTCCAAGAAACGACTGAGAGCCGGGAGCACCTTTGGTAGTC AAGCCAGTACGTCCTTTGATAAGGCATCGGTAGACAGCGTGGATAGTACCATTTTCTTGGAAGAGCCTGG AGACTGGTCCTTCACATCATTCTGTGAGCAGCTGACTAATGACCTCTTCCACCAATCTTGGGAGATCAGG CATGGGGCAGCTACAGGCCTAAGAGAGGTGCTCAAGGCCCATGGACCGAGTGCTGGAAAGTCAGCTGACT CATCTGTAGACCAGGTTGTTCTCAACCAGATGTTCCTTGAAGATATGTCACTTCGTCTGCTGTGCGTGCT TGCTCTGGATCGATTTGGAGACTTTGTATCAGATGAGGTGGTAGCACCAGTCAGAGAAACCTGTGCCCAA GCTCTGGGTGTGGTCCTACATCACATGACCCCTGAGGCCGTGCACGGAGTGTGTACGATCCTACTCCAGC TCCTAGCCCAGAATCAGTGGGAGGTCCGTCACGGTGGACTGCTGGGACTCAAGTATCTGCTAGCAGTTAG GAAGGAAATGACAGAAGTCCTCCTTCCTGCTGTACTGCCCTCTATCATACAAGGACTCCAGGATGTGGAT GATGACGTGAGGGCAGTCTCCGCTGCAGCCTTGCTACCTGTCACTCAAGTGCTCATTAAGACTAGCCCTC AACAGGTGATGCAGATCTTGCACACACTGTGGGAAACCCTAGTCGAACTTGACGACCTGACGGCGTCCAC CAACAGTATCATGAATCTCCTGGCATCCCTCCTCTCCAACCCTTCAGTCTGCATCCAGTCTAGTCTCAGT CAACCCCTGGGGGTCATGGTACAGAGACTCTGGCCTTTCATGAGGCACAACATAGGATCTGTCCGGAGGG CCGTACTGGACACCCTTCACACCCTACTCTGCACAGAGAACCCACAGATGCCTGTAGCTGCTTGGATTGC TCCTATCTTAACTGATATGTTAAGACATGTCTATCAAAGGTGCATCTTGGAGACCAATAAAGATATCCTA GAGCTTGTCAAGAAGGTCTGGGATGCCCTTCTCCAGAGAACGCCGTTTGAATTCATCGTCCAGGCAGCCT TTCCGTGGGTGAGCACCTGGCTATGTCTAGCTATGCAACCTGCAAGAGTACCCATAGATCCCCAGATGCT CATAGAAGCAAAGCATAAACCGAAGGAAACCAGCAAGTCACCTGGGAAGTCTTCATGGAAAAGCCAGCAG ACGATACGAGAGGACGACGTCGAGTACATCGGAGGGGACGTCTCCATGACTGCCTCTCAGACCGACCAGG AAGAAGCAGTCTTGCTTGCAAGGGCAACAGCAGCTAGACTCCTTGGTCGTTTAGCCCCCTACCTAACCCT GACCATCGCTCCCAGTCAAGATGGCGGACTGGACCCATTCTGTCAGCTCCTTCATTTCCATCTCAACACC AAGAATTCCTTACAGCGGATGCAGGTTGCCATGGTAATTGAGGAGTGGGCTAAAGCAGGACTACAGGACT GCAAATGCCCCGATGGCCTGAGGTCAACCCTGATGGAGGTCTTATCAAGTACTGTCTATTTTGATGAGGT TACAAATCCTTTCATGAAACTACAGCTGGAATGTAAGAGCCTTGTTGTGGCCTGGAGAGCAATGAGACCT GACATATTGCAAACCAGTTTCCCGAGTGCCTTTACTGTTGACCAAGCGAAGTCATTGTACGACTCCGTTC AGCAGCATCTATCTCAGACGATTGGTGGAAGCGATGCCCACCAAGATCTCCAGAATAAAGCAAGACAGGT GCTGGCATCTGTCCATGAAATCAATGAACAGCAACAAAAACTCAGTATCAGAACTCAGTCATGTGTGACA GGAGCATTAGTCTCTCTTCAAGCCTTACCTGATAAATTGAATCCACTCATCAGACCTCTGATGGATGCAG TCAAAAAGGAAGAGAGTCCAATTATGCAGAAAAGAGCTGCAGGGAACTTGGCCCGTCTCCTGGAGCTTTG TTCATCCCGCCAACCTTGCCCCAACCCTAAGATCATCAAGAACCTCTGCACCAGTCTCTGTTCTGACCCA TCCATCACCCCACCGGCTTCCCAACCTCTACGCTCCTCCACCAACGATCCCCCATCAAACACCCTTGCCG TGCCCATGCCTGGCCCGGGGGGGTCCAGGTCGTCATCGCCCCTGACAGTCGGGGGCGGGGAGGGCAGCAG TTCACAGACGATCGTCCCCTGCGATAAGCTTCATGGTGTCCTTACATTGTCCAAGCAGCAACAGCAAGCA GTATTGACAGCTGCGAGCAGACGAGCAGCCTTCACCAAGTCTCGCAGCCGTGACAGCAGCATGCCCGACA TAGCACTAAGCCTGGGCGTCGACCCTGGTGGGGAATCATCAGAGACCATGAAGCAGACTAAGATCCAGAG GAGGGGGTCGGAGATGGCCCTGACTACCATCACTTCACACTTTGGCAGCAGGCTGCTGGAGTCCTTAGGC AAGGTCTGGGAGTCCATGACAGGTCAGCTCATGGAGCAAATCAAACCGGGGAATTTTGATCGACTGTTTC ACTTGGATAAGGACCATCATGCCCAAGATCTTGTCACCTCAATGCAAGTCTTTGAAACTCTTGCTCCTGT TTTACATTCCTGTTATCATCCCAAGTTAGAGGCGCTGCTGCCCCATTTCATCACGTGCCTGGAGCACCCT TACACGTCCGTTCGTCACATGTCATCCCGTTGCTTGGGAATGATGTGTAAGGTCATTACCATGGCAACCA TGAACCGTCTCCTGATGGAGGTCGTTCCCATGCTAGGAGCCCAGGAGGATGAGGTCAAGCGAGAAGGAGC GGTCGAAGCATTAGCTTGTGTCATTGATCAGCTTGGGATGGACATTGTCCCCTACATCGTCCTCCTGGTC GTACCTCTACTAGGCAGGATGAGTGACCAGGTGGACAGTATCAGGCTGACCGCTACTCAATGCTTCGCCA CTCTGATCAGGCTAATGCCGCTTGAGGCTGGTATCCCTGACCCACCCGCCATGACAGACGCCCTCGTTGA GCAGAAAAACAGGGAGAGATGTTTCCTGGAACAACTCCTAGACGGCTCCAAGCTAGACAACTACAAGGTC CCCGTTCCTATCAAGGCTGAACTCAGGAAGTACCAACAAGATGGTGTGAACTGGTTAGCATTCCTCAACA AGTACAAGCTCCATGGCATCCTGTGCGACGACATGGGTCTGGGAAAGACCCTACAGTCTATCTGCATCAT GGCTGGCGACCACCACCACCGGAACGCCGCCTACAAGAAGGCCAAGAGCGCCGACTGTGTGCCCATGCCG TCCATAGTAGTGTGTCCCCCGACCCTGACTGGTCACTGGGTCTACGAGGTTCAGAAGTTCTGCTCCACCC AGTATCTGAACCCCCTGCACTACACTGGTCCTCCAACTGAACGTACTAGGTTAAGGAGCAAAGTCAAGAA GCACAATCTTGTGGTTGTCTCTTATGATATCGTCAGGAATGATATTGATTTCTTTAGGACAATAGATTGG AATTATTGCATCCTTGATGAGGGTCATATAATCAAGAATGGACGGACCAAGCTAGCAAAGGCCATCAAGC AGCTCAATGCATGTCACAGACTCATCCTATCTGGGACACCTATACAGAATAATGTATTGGAGCTGTGGTC TCTGTTTGACTTCCTGCTGCCTGGATTCCTAGGAACAGAGAAACAGTTCATAGCAAGGTTTGCCAAACCC ATCCTCCAAAGCCGGGATGCCAAGAGTTCTTCCAAGGAACAAGAGGCTGGAGCTCTGGCAATGGAGGCCC TTCATCGTCAGGTCCTACCATTTCTCTTGAGAAGACTCAAAGAAGATGTCCTTGATGACCTTCCACCCAA GATCATCCAGGATTACTACTGCGAGCTCAGTCCACTACAGGTTCAACTGTATGAGGACTTTGCTAGGTCT AGGGCCAAGATGGGAGTGGTGGAAACCATCTCTTCCGAGGCTGAGGAGAAGAAACCCAAAGCCCCGGCTG CTGCTACTGGACATATATTCCAGGCATTGCAGTATCTACGTAAGGTATGCAACCATCCTCTACTCGTTCT CAACAACAAACATCCACAGTATGAAGCGGTAACCAAGCAACTGAAAGAACAGAACTCGTCCCTGCACGAC ATCAACCATGCTCCAAAACTAACTGCCCTAAAGCAACTGTTGTTAGATTGCGGCATTGGTGTGGATGCTC TAGGATCTAACCCAGGCTCCGAGTTGACCCAGTCTGTGGTTGGCCAGCATCGGGTGCTTCTCTTCTGTCA ACTCAAAGGAATGCTGGACATCGTAGAGAAAGACCTTCTCAGATCTCAGATGCCATCAGTAGCATACCTG AGGTTAGATGGGAGTGTACCTGCTAGCCAAAGACATGATCTTGTTCACAGATTTAACAATGATCCATCTA TTGATATTCTTCTGTTGACCACTCATGTCGGTGGTCTGGGGCTGAACTTGACCGGAGCAGACACGGTCAT CTTTGTAGAACATGACTGGAATCCCACCAAAGACTTGCAGGCTATGGACAGGGCTCATAGGATAGGACAG AAGAAGGTGGTCAACGTCTACCGTCTCATCACTAGAGGGACTCTGGAGGAGAAGATCATGGGTCTTCAGA AGTTTAAGCTGAACATTGCAAATACCGTAATTACTCAGGATAACTCAAGTCTACAATCTATGGGTACCGA TCAGCTTCTGGATCTATTCAATTTAGATATGAGTGGCCCTGTTGGACCTGGTGAGGCGACCATCGAGGGG AATGGAAGCAAGGCCAAACAAGGTCCTAACACAATGAACTCGGTCCTAGCAAACCTTGGCGATCTGTGGG ATGAGAGCCAGTATGAGACAGAATACAACCTTGAAGACTTCATGCAAAGTTTAACATCAAGATGAATAGG TGGGACTAGGCTGATGTATCGAGGGCAATGCATGGAAGTAAATGAGTGGGACTGCCTAGGTGTTTTCACT GAAGTTATTTTGATAGGTTGTGAGAAAAGGGAATGCGTGGTGACGGATGCTGTTACGTGGAGCTAAGACA GTGCAGAAAAAACAATAGATTTATTTTGAAAAGAGGATCAAAGCAAAGTATATCATCAAGATGGATAGGT CAGACTCGGCTGATATATTGAGGACAATGCCTGAAAGTGAAGGAGTGGGACGTCCGAGGTGTTTTCATCA AGTTATGTGTTTATATGTCCATGGAAAAAATTTGAATGCATGGTGATGAGTACTGTTGCTTGGAAAGATC ACATCAATTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds