Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_784576.5 PREDICTED: Strongylocentrotus purpuratus short transient receptor potential channel 3 (LOC584724), transcript variant X1, mRNA CTTCATTGTATGAAATGTGCAGCTGTAATTAGAGCTGAACAATTTTGGGTCAACTCAATTTATGGACACC GAGAGATGTAGGCCTACATTGGTTATCGTCATACTTATTTCATACTGTACGTCGCCTGCCAAGGAAAAAG TGACAAATTATGGTTCTTTGGAATTGCAGTTTGATATTGTTTGATATTGTGAGCTAACATGCAGTATACT TGTGCCTTCACAACTCGGAGATACTCACTGATTATCGTATCAGACGTTTATCATCAAAACTAACGCCATA CCAGATCCCATCTACAAGTAAAAAAAAGTGATTGGAATTGCAATGAAATACTTTTTTCCATTCCACAAGT TGATTTGAAGTTACCATATAGTAAGTTTGTGCTACCTGATGCCGCTTCTTCAACGTAACGCTGTGTTCTA CACCGCTCTTGCCAGTGCAGGATTGACATATTTTTGGGAAACCACAATAGACGTTTTGCAGTTGCACAAG TTTATTTTGTAAGTTACTCTGTGTATTTCTTCAACTTGATGGTTACTCAAAAATTATCACTTCAAGATGA GCGTTTATCCTAATATAAAAAAAGATTGTCGATGCATTAACTCTCGCGTGGGACACATTTCCTTCGTTTG AAAGTAGACAGATGGACGGATTGTTAAATTTGGATCAGAATTGTGTTCCTCTATACCTCATCATTCTTCT CTCAAAGTGACTCGGTAACATTGTTGAAGAAAATCAAAGAAAGATGCCATCGAAAAAGCGTAACCTGTCC AATTCAGGCCTACCGCGGACGATGGGCGATGCGGAGGCCAGGTTCATGACTGCCGTCTGCAATGGTAACC TGGCCTATGTGAAGACGACACTGAGTGGCGGTGCTGACATTGCGACCATCAATACAATGCTTCATCTGAC GGATAGCAAAGACCGTACCGCCCTCGAGATCGCAACGGAGAACGAACACTTTGAGATCGTGCTTTTCATC ATCGAAGAGCATGATCATCACCTAAGTCTCAATGAGATACATGAAAGCCTCATGGTGGCCATCACCAAGG GATATGTTAACATTACGCAGGTTTTACTGGGGCATCCTTGCTACGATGAGAAGAAAAACCGTGCGATGCA AACATTAGGTCCTCACGAAACCTTCTACGATCGTAGCTACCGATCTAAGTTCGACCGTGACGTCACCCCG ATCATGATGGCAGCCATGTATAATGAAGTCGACATCCTCCGAATACTCATGGATCGAGGTGACGATGTTG TCAAACCCCATCACCCTCTCTGTGGATGTACAACCTGTTTGAACCGGAAGGAGTATGATCCTCTCATGCA CTCTCTATCCATCATTAATGCATATCGCGCATTGTGTAGTGAAGCCTACATCTCATTGACGAGTGAAGAT CCTATCTTGACTGCTTTCCTCTTGAGCAAAGAGCTAGACGGCCTCTGTCGGACAGAGAAAGAGTTCAAGA CTGAGTACAAGGAACTGAAACAGAAATGCAAAATGTATGCATCCAACCTTCTCGATATGTGTCAAAATAC GGAGGAGGTGAAAACGATCTTGAAACAGGCGGCGATCTCAGAAACTGAAGTCAAAGAGCAGGCCTGCCAC AATCCTCTTGAGAATGACAAGGAAGATCAGAACGCCCTCCCACGACTGGAGATGGCCATCGAATACCAAC AAAAACAGTTTGTAGCTCATCCTCATTGCCAGCACCATCTTTCTACGCTGTGGTACCAGGGTCTTCCGAA AATCAGACTGATGAACACATGGAGGAGAATGGTCATGTTATCTCTCTTCCTACCCCTTGTACCATTCGCA GTCATTATTTATCTCATCTATCCCAAAGGAAATTTTGGAAACTTCATGCGAAGTCCCATCATCAAGTTCA TCAATCAGTCGGTGATGTACTTGGTCTTCTTACTTCTCATGTTCATGGAGTCGGTCATGGAGTCGTCTGG AATCTTCAGACGTAATGATATCACCATTGAGAGTATTTTCCAGTCATCAAACTCATGTCGACCTTACATA GATCAAATTGGTAGCTACCATAACATCAAGGCCAATATCAGAGAAGCTAGCAGCATCATCGAGTTCATTC TTTTTATTTTCGTCATGGGGATGATTTGGCAGGAGGTTAAGCAGATATGGCGAGAAGGCGTGCATACCTA TGTTAGATCTATCTGGAACTGGATTGATTTAGCTATGTTAAACCTTCTCCTGAGTTCACTTGTGATTGTG TTCATGACTACTGAATTGACCAACAAGGCCGAACAATTCTTCCAAACCGAGGGGAACTGCAAGGCTCTCA TTAACAATGAAGCCAAGGCCCAGCGGCAATTTTATTTCCTATCCGGTGATCGGAGGGCCTGGGAAAACAA CGACCCGAACCTGATAGGGGAAGGCCTGTTCGCTATGGCCAATGTTCTGAGCTTCTCTCGTCTCTCATTC ATCCTCCCTGTCAGTGAATTCCTTGGACCGCTCCAGATCTCCCTTGGAAGGATGATGGGTGATATCATGC GATTCGCCGCCATGTTCACCGTGGTCTTCATAGCCTTCTTGTGCGCCATGTGTAATCTGTATTGGTACTA TCCCAATGAAAGCGCCTTTGGATCGCTGTTGAACGCTATCCGGACACTAATGTGGGCTTTGTTCGGTCTT GGCGACCCTTCTGACCTATCGTGCCCTGATACTGATTCAGACTGCGGCCATACCTCTACCGAAGCCTTTG GAATTCTGCTCTACAGTTCCTACATGGGTATCATGGTCATTGTTATGCTGAACATGCTCATCGCCATGAT GTCTTCGTCCTTCGATGCGATCAATAATGACGAAGATGTGGAGTGGAAGTTTTCTCGTTCCAAACTCTGG CTGTCATATTTCGAGAAAGGGGCCACATTACCTGTTCCGTTCAATCTCATACCTTCACCCAAGTCTATCT TCAACAATATCATTGTGGCCGGCTATCAACTGATCAAAAAGAACTCACGTCAACGGAACATCGCAACTCA CAGAATAACTTCTCAGAGTAACCTGCGGAGGGCTTTGCGACGGAATGTAACGAGTCATGACGATCTTATG AAGAATGTCGTCAAGAGGTTTCTCTTCAAGTTACAACGATCAAAGGACACCGATGAGGTCGATGAAGGAG AACTTGAAGAAATCAAGAATGACATATCTAGCTTCCGATTTGATGTGCTGGGAATGCTCGGCAATCTATC TTCAAAGGTCGACGCCCAGAAGCCTGGAAACTCCAACATGAGCAACGGATATCAGGAGCAGGGACAGGGC GGGCTCGGTAAGACAAACAATTTAGATGACTTGGAAAAAGTCGCTGATGGGATCAACGAAAAGCTTAATG TCCTGTCAGACATGATGACAATAATGCAAGACCGGTTCTCTGAGATGTTCCAGAAAAGCCAGTCAGAATC GAAGGCATAATAACACAGATCATCGGAGTCCTTCGGTCATGAGACGTTTTAACAATTCAAACCTCGGCGA CTCACTGTATAACGGAATAATATCGTTATCGACACGCAATTTAGCTAGTCGATCGTCAGGGAAAGAATGA GCTGATGATGACATCCGAGGAAAGAAGAGAGAACATTTTGACAAATATGAATCATAAATGTCTTATTATT TTGTTGTTTCGCTCAATTCAAAGTTAACAGGGTTTCGCCACATGAAGAGCTGACATGCAAAAGGCGCTAA ATCCATTTTCACCCGCTTACAATGTTTCTATACACCGTTTATAACACATCATAGATGAGCATCCAAATCA CGCAATTTCACCTCAAAATGTTGCAGGAAATGTTTTTAAAAATCATCAATATGTTTTCTTTCAAAAGGCA CTAAATCCAAAATATTTACCATGAAAAACCCGCTATTTCCATGTTATCTTTATTATTTGTTCTTGTTGGG CCAAGCATCCCAGCTTGGAGTGCCTTGACCAATTAGAAAGCAGAACAGAGACAGAAAGCTTACTTCACAA TGGGTAAATTTGTAAGCCTACATAAAAATTTGGTTTTAAATTTGTATTGTTATAATATATTTTAGGTACA TGAACGTTACTATACTGTTCGAATTTGTATCTACATGTAACGGTTTTAACATGGCGCGGTACGGAAGCTT TAGAGTTGATTCCTTTATGTGATTATATTTCTCGTCATTATGCTTGTACAGCGCATAGAGAAACTTAGGT TTATTATGCGCTTTATAAATATTGTATTATTATTATTAGACAGGCTTTGCAATTATGTGATATTAACTGC CAGTTTTAATTAGTGATTGGGTGGAGAGGGGGTTAGAGGACTGTTGCTGCACACATTTATATTCTCGTTT CTAGTTACAAAACAATGATAGTATTTGAGTATCAATATAAAGTATCTCATTTGAACGTTGCCGTGGACCC TCATGATCTTTCTTACAAAAGGCACTAAACCATTGTTTTCCTCTCAAAGGGCGCTAAATCCAAAACAAAA TATATGTAGGATTTTGTTCATTACTGTATTTGTGATCTGAAGTGATAGTTCTATCATATACTATCTAGGA AATTGACAACTAAAAAAAAGGAACATGTGTAAACTAAAAAGTCTTTATTTACTCTAAATTTGCTGGAAGG GATGTAGCGCCTTTGCTCGGAAGCTCATCACATTAAGACATTGGGAGCTAGGTATAGAACTGGTAGACGA AACTGCCTGTTAGTTGAATTGAGACTTGTACGTATATATTATTCGATATATTTTTGATAAAATGTCATTT TATTATACATCTATCTTGACTTGTACATTATATTATAAGAAAATGTTGCCTGAAATCCTATCAGGTTAAT TGAATGATGTAGTGATGGTCATTGGCGTAGGCTATGCAGGATTTTGTCAAGGAGGGTGTTCGAAAATTGG AAAATCGCGCCGACCGAGATTTCGCTCATTAAAAAAAAAATGAAAGGGGTAACCCCCAAAACACTACCCC CCCCCCCTCCTCCCCCTGCTTACGTGCCTGGTGATGGTCACCATTTTTGCTTTGAATTTAGACCCTCCCC CTAAAAATAAAAAGCAAAACGGCAAGTATACATGGATATCTGATATGTGCATTTATTGCTTGCTATCGGG CTATGGAATAACTTATTTAATTTAATCTAATCTAATATAATATAATTTAGGAACTTAACATTAATCTTGA TCTAAGGAGACACGAACGAACGAACTTGCTATATATTTACTTGGACTGTGAAATGCACAGACAGAAGATG ACAATTAGATTAATATGTTTTATTGTATGATACAAAGTGTCAAAGAAATTTTCAGAATGAAAAACAAAAA CATAATACAATTTCTTGAGGTAAAAGTGCATGATTCATCAAACATTGTATACCTTTGATGACATGTAAAT ATTCCCTCTGTATCTACATAAGTATATGTAGCAGGATATAGTACTACCTTAAAGGGCCCATGACATCGAA ATACAAGTGTATTCCTGTTGGTGTGCAGTCCTGCATACATCTCATATTTTGATATGTAAACTTCTGAATT TGTTTCATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds