Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XR_004061816.1 PREDICTED: Strongylocentrotus purpuratus collagen triple helix repeat-containing protein 1 (LOC586840), transcript variant X3, misc_RNA AACTTAAGGATGAGGGAGTGCATTGGAACTCATCCACCCTCTTCAAGGATGGGTTATTAGACACTTGTCC GTCCGTCAAACCCATCTCCATTTTAATTTTCATCTTCTGGAAACTAAAACTTGAGTCTTTCATTTAATCT TCATCATCGTAAGCCATTTTTCGGAATATCGTCATCTATATTGGAATATTACATGGAATAAAAGCAATGG CCTTAACAGGAAGGATGTTGATTGCTTTGTCTTTGGTTTCTTTGCTTCTTCTTCTCTCGATGGCAGAAGT TAATGCTTGGGGAGCGTCTTGTTCCGCGGGCAAACCAGGGCCACCGGGACCTCCCGGACCCACTGGGCCC TCAGGTAGTCCAGGAGATGGTGAACTCCTTGAATATAACAACTGGAAACAATGTGCCTGGTACTCGGCTA ACGGCAATGACTATGACACTATCTATACGTGCACATTCACAAAGCGGGTGAGTGACTCCGCTCTTTGGGT CTACTATGGCGGCAATATTCGTCTCTATGGATGCAGTGGATGCTGTAAGAGATGGTATTTTACTTTCAAT GACAATGAATGTTCTCCTACACCTATCGATGGCGTGGTATATCAAGCCAACACTAACAACATGAACCTGC ACAGACACAGGAGTATTTCAGGGTACTGCCACACAATCGGAGCTGGATCAATTAATGTGAAATTCCTGGT CGGGGACTGCTCCGGGTATGGAAACTACGATGCATACACGGGATGGAATAGTGCTTCTCGTATCATCATT AAAGAGGTCCCTAAATCATCGTATGGTTACTAACTTGATCAAGACACTGCTTCCAGAATATTGACAAATT TAAATTATTTACACAGTAATCCAGAAGACCTAACCAAGTTTAAGGACCTTCCATTTGTGGCATGATTTTC CCGGGACTTTGGATAATACTCCACCGCTACCATTCGACTGGTGACTGAGTGGTGTGCATTCGAAGAACGC GATACGGCCATTTTGATTGTAGACAATGGAATAATGCAACACCAGGGAAACTTTCAATGTGAAGCTCAAA ACAGACACAATATTATCTTCTTGCTGTTGTCTTTTCGAACCCCTGAAGAATAAAGACATGACGCTGAATT CTGGAATTCTAAATTTCAAAACTTCTTCATTCTTTTTACGACGGTCTGGACGAATACCATAGAGGAAATA TCCTCTGAAAAGGATCGTTCTCACAAATATGACTATAAATAGCTGGAAAATTAGCACCAGACTTTCTTAT CATGATCATGTGTGTGTATATGTGTGAAGTCCAAAATACATTTCTGCATGGAGTGCATGTGGCTTTCAGC AAGACGGGGTTTATTATCTATCATGTTGATGATTCAAAACCTCACAGTGGACACATCTTTAAATTGTGTT CACCAATCATTGTGTACTTCTTAATTAACCTGTCTAAATAACTTCCAGTTAGTTTCTTCCACAATATAAT CTTATGAGCAGAACTGTGATGTTCTTTACAGGCCAGGGGTGTTTTTTAAAGTTTTTTTCCCCAGATATTA TTTACTTTAAAGTATACAAAATGTCCATATATCGTTATTATCACCATTATAAAAAATATGCACTATCTTT GATTTAGACAATGAAAGCAAAATAATAGAAAATATATAAAATATATAGATCCTGAGTTTATGACCTTTCC TACCCGATTTGAAATAGACCAAACGAAGTACTCTTTTCTGTTTTAATTGAATGTTAAAAATCACCAAGGG AAAAGTTCTGTACAAATTTTCATTTGTAGATATGCATTATTTCATTATATTTATATATGGTAAGTGTACA TTACTGTCTTGTTGCTAGTTGTTATTCTTAGAATCACAAATTAGGGCTTTTTATTTTAAATGGACACCTC TCGAATCTAGTATTTGTCACACCTCCACTGTTTTCGACATATATCACGTCAAAGTCAGCTGGATGACACT GCATTTAATACTCCTTAAATTGGGAATAATGAATTACGGAGAACATTTTGTTGCAGATCTATCATGAATT TTTTCCTCATTATGTGATAGTTGCTCGAATATAAGAAATATAAAAACCCAACCTTGACAAAATTGTTCTG AAAGAAAGCAGGAAAATATAGAGAAGCGCATGAGTGAAAGATTGAACAAAATATGACCCAAAGAAAAGAA AGATATATATTAAGGGAGTTTCAAATTGGCCAAATCTGAAATGTCATTGTGATGTAGTGGCGGATATCTA TCCCATTCGTTTCCACATGCAAAATGAGTGAAATGTCAATTTTTGAAAATGTTTGGCTCAGTATGGTTTC TTTTTTTCCCCCAGGACCTATATTAATATGCTCTTCTTAGTATATTTTGAGTAGTACTCCGAGGGAGAAG TCTTTCAGGAGAAAGACATAAACATAAGTGATATTTTATACGAGACTACGTCGCAATCCACCGTCCAAAT TGAGATTCGAACCAATGTGACATCAATTTTTATTCAGAAGATAAAATGTCTTGGTGAAATTGTAAACAAG TGCAAAATATTCAAATAAATAACCTTTGCGATTACCAATGTTGTAATGGATGGTTTCTGTGTTTAACGTA AGGCCTATACGTCTAACCTAAAGCCTGACAGAATGGCAAGTATTGATTAAGTCGTGCCTATATGCCCAAA TGGTGTGTTCATGTATATTACGCTGTATAACATCCGCCGCGACCAAATCTACGGCTTATTTATTGATTTA GATTGAATTCAAGAAGGAAAGGATACCTTCTGTTTGACGAGTCCACAAGCAGATCCAGCAGCTATCCATA CCTGAAAAATCGACATTTTATGGAATTATTAAAGGAAATACGGAATTTCTGAGTTCAGATAGTTTAGATA TAATTTGAAAGGTTATTTTGTGCAGGAGAAACATCTGTAATACGATATGGGACTTTGGAAATACCCAGAG AATTCTCCAAGATCTACAATGACGTTACTCTTGATGTTGTGGCTTTGTAGCGTCATAAAAGTGAACGCAT GGGGATCGAGCTGTTCTAAAGGTCTTCCAGGCCCGGCTGGACCTCCCGGACCCACTGGGCCGTCAGGTAG TCCAGGAGATGGTGAACTCCTTGAATATAACAACTGGAAACAATGTGCCTGGTACTCGGCTAATAACAAT GACTATGACACTATCTATACGTGCACATTCACAAAGCGGGTGAGTGACTCTGCTCTTTGGGTCTACTATG GCGGCAATATTCGTCTCTATGGATGCAGTGGATGCTGTAAGAGATGGTATTTTACTTTCAATGACAATGA ATGTTCTCCTACACCTATCGATGGTGTGGTATATCAAGCCAACACTAACAACATGAACCTGCACAGACAC AGGAGTATTTCAGGGTACTGCCACACAATCGGAGCTGGATCAATTAATGTGAAATTCATGGTCGGAGACT GCTCCGGGTATGGAAACTACGATGCATGCACGGGATGGAATAGTGCTTCTCGTATCATCATTAAAGAGGT CCCTAAATCATCGTATGGTTACTAGGATGGCAAAACAAATGCTTAACTTTTACTTCGAAAGTTTAGTTCC AGGAAAGGTGAAAAATAACTTTGTCATTCTTTTTATGTTAGTGTGAAAGAAAATCATAATATTCAAAATG TTTCCTTGAAAAGGAGGGATATTCAAATATCCTTATATTTGAAGTATAACAAGAAAAAGCTCAAGTGTTT GGAATAAACTTTCATGCCACATCATATTGTCGTATAAATTAATTTGTATGTGCTGCATAATCAAAACCTT TTCCGACTGCTTCCAGACAGTTACTTTAACAATTCAATCGTGATGACCAGAACTCGACTTTTCTTCTAAA GAGGGATTGTCATAACATCAGATGGGTCTTTTAACGTTAATACTGCACGACTTACCTGTTCCTTCGGCAA TCTTCCATATAAGAATGTTCGACGTATCACCCTTAGATCCGCAACAGGAAACAGCCTACGAGAGCAACAG CCCTCGAGGCCCTCGAGACCGACGAAACCGACGACCCACGAGACCACCAATTGGGATCTCGCAGGCATTC TGAAAACCGTTACCCGAGGGTTCACGCGTCGCGACGGCCCAAGCGACCGACATGTCGGTTTAGCGGGTCT TCTGACGCAATTACTCATAGAAGAAAATGTTCATTTGTTAGTCTAAATTTGTTAATGTTACAACATTATC AGTTATTAATCTGTCAAGCAATTCACATTACCCTCTCAGTTTTTAGGACCGTCTTATCAATTGACATAGC ATTTTGTTCATCATTAATCGGATACATAAAAACTTTTCAAATTACTGTAACCGCAAACAAAGTTATGGTT CAGCATTGTATAAGAAAATAAGACGTTATAAAACTTTACAGTTATGAGACTAGTTTTTAGCAATATTACT TAGTACTTGTGATTACTAATACAAATATATTATTGGTATAGAGTATTATGTCAACAACTGCGATCAGGCA TTTTCTACGTGTTTCACCTAAAATCGAATATGTATAAATGTGTCACAAATGGATGTTGGAAAAATTGTCG CTATAATTGACGAAGAGTTTCATTTCAAGAACTCTGATTATTTTGTTTAGATGATGTTCAAAATTATGTT GTAAATTTCTTTCCAAAAAATTATGAGACATGTATATATATGTGCACCATGTATTCTGTTATATTTACAA ATAGACATAGTTACGCACGGTCAAACAACACACCCAATTGAATTGAATTGAATACCTAACTATTCAATCA CGTGACCTTCTCCGCATCGATTTAAGGATTAACTATTTGACGTCTTTTTACCAGTAGACGTAGGATACTT GTTCTTCCAAGTTTTTAATCGATTGGTAGACAAAAATAAACGATGAGTAGCCTTCCAACTTCAACAATTG TTATTGCGCTTCGGACAGACATGCACTTATCTTGAATGTACGATGATAAAACTTACATTTCACCAAGTTC GTATGTACTGTCCATGTAAAGCAATGGACATGCTATTTTCAATGTACGAACTGCATAGCATTGAACAAAC ATGATTTATTGACGGAATTAACTAGAGAGATATTATTATTGGTGATGTAATCTTGTGGTTGACATTATTA CATCATGAAATACTTTATTCAACTATGGCTTCAATATGCTAAATGAGATACTGAAACATATACATGAAGC GATGTTTATGAATATACATGAGGCGACGTTTAAGGTTAGTCTTTCATCAAAACAGACTTCTGTTTAAGTA ATATGCATATTTCTGTATGGAATATTTTGTGAATAAAAAGATTCGAATTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds